RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 ZMYM4Q5VZL5 1548 aa26.41■■□□□ 1.82
LINC00404-201ENST00000418660 POGZQ7Z3K3 1410 aa26.4■■□□□ 1.82
LINC00404-201ENST00000418660 ARHGEF40Q8TER5 1519 aa26.39■■□□□ 1.81
LINC00404-201ENST00000418660 MAGI2Q86UL8 1455 aa26.38■■□□□ 1.81
LINC00404-201ENST00000418660 PREX2Q70Z35 1606 aa26.36■■□□□ 1.81
LINC00404-201ENST00000418660 CDC42BPBQ9Y5S2 1711 aa26.35■■□□□ 1.81
LINC00404-201ENST00000418660 ZFYVE16Q7Z3T8 1539 aa26.34■■□□□ 1.81
LINC00404-201ENST00000418660 ARID4BQ4LE39 1312 aaPredicted RBP26.33■■□□□ 1.81
LINC00404-201ENST00000418660 YEATS2Q9ULM3 1422 aa26.32■■□□□ 1.8
LINC00404-201ENST00000418660 MTUS2Q5JR59 1369 aa26.31■■□□□ 1.8
LINC00404-201ENST00000418660 ZNF518AQ6AHZ1 1483 aa26.3■■□□□ 1.8
LINC00404-201ENST00000418660 CDC42BPAQ5VT25 1732 aa26.29■■□□□ 1.8
LINC00404-201ENST00000418660 ADAMTSL3P82987 1691 aa26.28■■□□□ 1.8
LINC00404-201ENST00000418660 AFAP1Q8N556 730 aa26.27■■□□□ 1.8
LINC00404-201ENST00000418660 GPATCH8Q9UKJ3 1502 aaKnown RBP26.27■■□□□ 1.8
LINC00404-201ENST00000418660 BCORL1Q5H9F3 1711 aa26.26■■□□□ 1.79
LINC00404-201ENST00000418660 ABCC1P33527 1531 aa26.25■■□□□ 1.79
LINC00404-201ENST00000418660 KDM5CP41229 1560 aa26.24■■□□□ 1.79
LINC00404-201ENST00000418660 EHBP1L1Q8N3D4 1523 aa26.23■■□□□ 1.79
LINC00404-201ENST00000418660 ARHGEF12Q9NZN5 1544 aa26.23■■□□□ 1.79
LINC00404-201ENST00000418660 ATP10AO60312 1499 aa26.23■■□□□ 1.79
LINC00404-201ENST00000418660 VPS8Q8N3P4 1428 aa26.22■■□□□ 1.79
LINC00404-201ENST00000418660 CCNB3Q8WWL7 1395 aa26.22■■□□□ 1.79
LINC00404-201ENST00000418660 ZNF777Q9ULD5 760 aaPredicted RBP26.21■■□□□ 1.79
LINC00404-201ENST00000418660 TRAPPC8Q9Y2L5 1435 aa26.21■■□□□ 1.79
LINC00404-201ENST00000418660 ITSN2Q9NZM3 1697 aa26.19■■□□□ 1.78
LINC00404-201ENST00000418660 CFDP1Q9UEE9 299 aaPredicted RBP26.19■■□□□ 1.78
LINC00404-201ENST00000418660 PTPRMP28827 1452 aa26.18■■□□□ 1.78
LINC00404-201ENST00000418660 MLH3Q9UHC1 1453 aa26.18■■□□□ 1.78
LINC00404-201ENST00000418660 C9orf84Q5VXU9 1444 aa26.18■■□□□ 1.78
LINC00404-201ENST00000418660 SIGLEC1Q9BZZ2 1709 aa26.18■■□□□ 1.78
LINC00404-201ENST00000418660 HECW2Q9P2P5 1572 aa26.18■■□□□ 1.78
LINC00404-201ENST00000418660 MYT1LQ9UL68 1186 aa26.18■■□□□ 1.78
LINC00404-201ENST00000418660 SAMD9LQ8IVG5 1584 aa26.17■■□□□ 1.78
LINC00404-201ENST00000418660 MADDQ8WXG6 1647 aa26.17■■□□□ 1.78
LINC00404-201ENST00000418660 TIAM1Q13009 1591 aa26.14■■□□□ 1.78
LINC00404-201ENST00000418660 PLEKHH2Q8IVE3 1493 aa26.13■■□□□ 1.77
LINC00404-201ENST00000418660 KIAA1107Q9UPP5 1409 aa26.13■■□□□ 1.77
LINC00404-201ENST00000418660 HNRNPMP52272 730 aaKnown RBP eCLIP26.12■■□□□ 1.77
LINC00404-201ENST00000418660 DIP2CQ9Y2E4 1556 aa26.12■■□□□ 1.77
LINC00404-201ENST00000418660 SYCP2Q9BX26 1530 aa26.11■■□□□ 1.77
LINC00404-201ENST00000418660 MLECQ14165 292 aa26.11■■□□□ 1.77
LINC00404-201ENST00000418660 REREQ9P2R6 1566 aa26.08■■□□□ 1.77
LINC00404-201ENST00000418660 ABCA6Q8N139 1617 aa26.08■■□□□ 1.77
LINC00404-201ENST00000418660 NCOA2Q15596 1464 aa26.08■■□□□ 1.77
LINC00404-201ENST00000418660 RIMS1Q86UR5 1692 aaKnown RBP26.08■■□□□ 1.77
LINC00404-201ENST00000418660 SUPT6HQ7KZ85 1726 aaKnown RBP26.08■■□□□ 1.76
LINC00404-201ENST00000418660 LRRC9Q6ZRR7 1453 aa26.05■■□□□ 1.76
LINC00404-201ENST00000418660 KIDINS220Q9ULH0 1771 aa26.05■■□□□ 1.76
LINC00404-201ENST00000418660 MAP3K1Q13233 1512 aa26.05■■□□□ 1.76
LINC00404-201ENST00000418660 SPAG9O60271 1321 aaKnown RBP26.05■■□□□ 1.76
LINC00404-201ENST00000418660 ZNF644Q9H582 1327 aaPredicted RBP26.03■■□□□ 1.76
LINC00404-201ENST00000418660 FER1L4A9Z1Z3 1794 aa26■■□□□ 1.75
LINC00404-201ENST00000418660 AGLP35573 1532 aa26■■□□□ 1.75
LINC00404-201ENST00000418660 MBD5Q9P267 1494 aa25.98■■□□□ 1.75
LINC00404-201ENST00000418660 KANK4Q5T7N3 995 aaPredicted RBP25.98■■□□□ 1.75
LINC00404-201ENST00000418660 ATP7AQ04656 1500 aa25.97■■□□□ 1.75
LINC00404-201ENST00000418660 INO80Q9ULG1 1556 aaPredicted RBP25.95■■□□□ 1.75
LINC00404-201ENST00000418660 PLPPR3Q6T4P5 718 aa25.94■■□□□ 1.74
LINC00404-201ENST00000418660 APLP2Q06481 763 aa25.93■■□□□ 1.74
LINC00404-201ENST00000418660 CAMSAP2Q08AD1 1489 aa25.92■■□□□ 1.74
LINC00404-201ENST00000418660 RSPH4AQ5TD94 716 aa25.91■■□□□ 1.74
LINC00404-201ENST00000418660 RTEL1-TNFRSF6BF6WH68 1400 aa25.89■■□□□ 1.74
LINC00404-201ENST00000418660 A2MP01023 1474 aa25.88■■□□□ 1.73
LINC00404-201ENST00000418660 LMTK3Q96Q04 1460 aa25.88■■□□□ 1.73
LINC00404-201ENST00000418660 CCDC141Q6ZP82 1450 aa25.87■■□□□ 1.73
LINC00404-201ENST00000418660 ESF1Q9H501 851 aaKnown RBP25.87■■□□□ 1.73
LINC00404-201ENST00000418660 CEBPAP49715 358 aaPredicted RBP25.85■■□□□ 1.73
LINC00404-201ENST00000418660 PLXNC1O60486 1568 aa25.85■■□□□ 1.73
LINC00404-201ENST00000418660 MYOM3Q5VTT5 1437 aa25.83■■□□□ 1.73
LINC00404-201ENST00000418660 MIA2Q96PC5 1412 aa25.83■■□□□ 1.73
LINC00404-201ENST00000418660 ADGBQ8N7X0 1667 aa25.83■■□□□ 1.73
LINC00404-201ENST00000418660 ARHGEF5Q12774 1597 aa25.82■■□□□ 1.72
LINC00404-201ENST00000418660 CNTLNQ9NXG0 1405 aa25.81■■□□□ 1.72
LINC00404-201ENST00000418660 TSPY4P0CV99 314 aa25.79■■□□□ 1.72
LINC00404-201ENST00000418660 TSPY10P0CW01 314 aa25.79■■□□□ 1.72
LINC00404-201ENST00000418660 DHX29Q7Z478 1369 aaKnown RBP25.78■■□□□ 1.72
LINC00404-201ENST00000418660 C3P01024 1663 aa25.76■■□□□ 1.71
LINC00404-201ENST00000418660 HSPA2P54652 639 aa25.74■■□□□ 1.71
LINC00404-201ENST00000418660 GGT6Q6P531 493 aa25.74■■□□□ 1.71
LINC00404-201ENST00000418660 PPP6R1Q9UPN7 881 aa25.73■■□□□ 1.71
LINC00404-201ENST00000418660 PREX1Q8TCU6 1659 aa25.73■■□□□ 1.71
LINC00404-201ENST00000418660 MROH2AA6NES4 1674 aa25.71■■□□□ 1.71
LINC00404-201ENST00000418660 ZMYM3Q14202 1370 aa25.7■■□□□ 1.71
LINC00404-201ENST00000418660 MAST1Q9Y2H9 1570 aa25.69■■□□□ 1.7
LINC00404-201ENST00000418660 UHRF1BP1Q6BDS2 1440 aa25.69■■□□□ 1.7
LINC00404-201ENST00000418660 KIF3BO15066 747 aa25.67■■□□□ 1.7
LINC00404-201ENST00000418660 SETD1BQ9UPS6 1966 aaKnown RBP25.67■■□□□ 1.7
LINC00404-201ENST00000418660 CLTCQ00610 1675 aaKnown RBP25.67■■□□□ 1.7
LINC00404-201ENST00000418660 PTPN23Q9H3S7 1636 aa25.65■■□□□ 1.7
LINC00404-201ENST00000418660 NPATQ14207 1427 aa25.64■■□□□ 1.7
LINC00404-201ENST00000418660 FGD6Q6ZV73 1430 aa25.64■■□□□ 1.7
LINC00404-201ENST00000418660 TCOF1Q13428 1488 aaKnown RBP25.61■■□□□ 1.69
LINC00404-201ENST00000418660 ABCC5O15440 1437 aa25.6■■□□□ 1.69
LINC00404-201ENST00000418660 SHANK2Q9UPX8 1470 aa25.58■■□□□ 1.69
LINC00404-201ENST00000418660 FAM135AQ9P2D6 1515 aa25.58■■□□□ 1.68
LINC00404-201ENST00000418660 PTPRKQ15262 1439 aa25.57■■□□□ 1.68
LINC00404-201ENST00000418660 DAPK1P53355 1430 aa25.55■■□□□ 1.68
LINC00404-201ENST00000418660 KDM5DQ9BY66 1539 aa25.54■■□□□ 1.68
LINC00404-201ENST00000418660 DNMT1P26358 1616 aaKnown RBP25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms