RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 KDM4FA0A1W2PPD8 638 aa36.14■■■■□ 3.38
SMARCB1-205ENST00000417137 ARHGAP5Q13017 1502 aa36.13■■■■□ 3.37
SMARCB1-205ENST00000417137 KANK4Q5T7N3 995 aaPredicted RBP36.12■■■■□ 3.37
SMARCB1-205ENST00000417137 GPATCH8Q9UKJ3 1502 aaKnown RBP36.08■■■■□ 3.37
SMARCB1-205ENST00000417137 CFDP1Q9UEE9 299 aaPredicted RBP36.07■■■■□ 3.36
SMARCB1-205ENST00000417137 RAPGEF3O95398 923 aa36.06■■■■□ 3.36
SMARCB1-205ENST00000417137 DENND4BO75064 1496 aaPredicted RBP36.05■■■■□ 3.36
SMARCB1-205ENST00000417137 ADGRL1O94910 1474 aa36.05■■■■□ 3.36
SMARCB1-205ENST00000417137 SUPT6HQ7KZ85 1726 aaKnown RBP36.04■■■■□ 3.36
SMARCB1-205ENST00000417137 PREX2Q70Z35 1606 aa36.04■■■■□ 3.36
SMARCB1-205ENST00000417137 NCOA2Q15596 1464 aa36.04■■■■□ 3.36
SMARCB1-205ENST00000417137 SCAPERQ9BY12 1400 aa36.03■■■■□ 3.36
SMARCB1-205ENST00000417137 ZNF777Q9ULD5 760 aaPredicted RBP36.02■■■■□ 3.36
SMARCB1-205ENST00000417137 CDC42BPBQ9Y5S2 1711 aa36■■■■□ 3.35
SMARCB1-205ENST00000417137 CDC42BPAQ5VT25 1732 aa35.99■■■■□ 3.35
SMARCB1-205ENST00000417137 POGZQ7Z3K3 1410 aa35.9■■■■□ 3.34
SMARCB1-205ENST00000417137 ITSN2Q9NZM3 1697 aa35.88■■■■□ 3.33
SMARCB1-205ENST00000417137 PLEKHH2Q8IVE3 1493 aa35.88■■■■□ 3.33
SMARCB1-205ENST00000417137 ZNF518AQ6AHZ1 1483 aa35.85■■■■□ 3.33
SMARCB1-205ENST00000417137 KIAA1107Q9UPP5 1409 aa35.84■■■■□ 3.33
SMARCB1-205ENST00000417137 AFAP1Q8N556 730 aa35.84■■■■□ 3.33
SMARCB1-205ENST00000417137 FRMPD1Q5SYB0 1578 aa35.84■■■■□ 3.33
SMARCB1-205ENST00000417137 ABCC1P33527 1531 aa35.83■■■■□ 3.33
SMARCB1-205ENST00000417137 RICTORQ6R327 1708 aa35.83■■■■□ 3.33
SMARCB1-205ENST00000417137 HNRNPMP52272 730 aaKnown RBP eCLIP35.82■■■■□ 3.32
SMARCB1-205ENST00000417137 SAMD9LQ8IVG5 1584 aa35.81■■■■□ 3.32
SMARCB1-205ENST00000417137 ZNF644Q9H582 1327 aaPredicted RBP35.8■■■■□ 3.32
SMARCB1-205ENST00000417137 MAGI2Q86UL8 1455 aa35.8■■■■□ 3.32
SMARCB1-205ENST00000417137 ARHGEF12Q9NZN5 1544 aa35.79■■■■□ 3.32
SMARCB1-205ENST00000417137 MYOM3Q5VTT5 1437 aa35.79■■■■□ 3.32
SMARCB1-205ENST00000417137 MYT1LQ9UL68 1186 aa35.78■■■■□ 3.32
SMARCB1-205ENST00000417137 TRAPPC8Q9Y2L5 1435 aa35.77■■■■□ 3.32
SMARCB1-205ENST00000417137 ZMYM4Q5VZL5 1548 aa35.77■■■■□ 3.32
SMARCB1-205ENST00000417137 MIA2Q96PC5 1412 aa35.76■■■■□ 3.32
SMARCB1-205ENST00000417137 SYCP2Q9BX26 1530 aa35.73■■■■□ 3.31
SMARCB1-205ENST00000417137 RSPH4AQ5TD94 716 aa35.73■■■■□ 3.31
SMARCB1-205ENST00000417137 KDM5CP41229 1560 aa35.69■■■■□ 3.3
SMARCB1-205ENST00000417137 ZFYVE16Q7Z3T8 1539 aa35.68■■■■□ 3.3
SMARCB1-205ENST00000417137 CAMSAP2Q08AD1 1489 aa35.68■■■■□ 3.3
SMARCB1-205ENST00000417137 SPAG9O60271 1321 aaKnown RBP35.67■■■■□ 3.3
SMARCB1-205ENST00000417137 MLH3Q9UHC1 1453 aa35.67■■■■□ 3.3
SMARCB1-205ENST00000417137 MBD5Q9P267 1494 aa35.65■■■■□ 3.3
SMARCB1-205ENST00000417137 YEATS2Q9ULM3 1422 aa35.65■■■■□ 3.3
SMARCB1-205ENST00000417137 PPARGC1BQ86YN6 1023 aaKnown RBP35.64■■■■□ 3.3
SMARCB1-205ENST00000417137 ARHGEF40Q8TER5 1519 aa35.62■■■■□ 3.29
SMARCB1-205ENST00000417137 HECW2Q9P2P5 1572 aa35.6■■■■□ 3.29
SMARCB1-205ENST00000417137 FGD6Q6ZV73 1430 aa35.6■■■■□ 3.29
SMARCB1-205ENST00000417137 ARID4BQ4LE39 1312 aaPredicted RBP35.59■■■■□ 3.29
SMARCB1-205ENST00000417137 ATP10AO60312 1499 aa35.59■■■■□ 3.29
SMARCB1-205ENST00000417137 TSPY4P0CV99 314 aa35.58■■■■□ 3.29
SMARCB1-205ENST00000417137 TSPY10P0CW01 314 aa35.58■■■■□ 3.29
SMARCB1-205ENST00000417137 CCDC141Q6ZP82 1450 aa35.55■■■■□ 3.28
SMARCB1-205ENST00000417137 C9orf84Q5VXU9 1444 aa35.52■■■■□ 3.28
SMARCB1-205ENST00000417137 ARHGEF5Q12774 1597 aa35.51■■■■□ 3.28
SMARCB1-205ENST00000417137 PTPN23Q9H3S7 1636 aa35.5■■■■□ 3.27
SMARCB1-205ENST00000417137 RTEL1-TNFRSF6BF6WH68 1400 aa35.5■■■■□ 3.27
SMARCB1-205ENST00000417137 TCOF1Q13428 1488 aaKnown RBP35.48■■■■□ 3.27
SMARCB1-205ENST00000417137 ATP7AQ04656 1500 aa35.47■■■■□ 3.27
SMARCB1-205ENST00000417137 FAM50AQ14320 339 aaKnown RBP35.46■■■■□ 3.27
SMARCB1-205ENST00000417137 KIDINS220Q9ULH0 1771 aa35.46■■■■□ 3.27
SMARCB1-205ENST00000417137 DIP2CQ9Y2E4 1556 aa35.45■■■■□ 3.27
SMARCB1-205ENST00000417137 ILDR1Q86SU0 546 aaPredicted RBP35.43■■■■□ 3.26
SMARCB1-205ENST00000417137 INO80Q9ULG1 1556 aaPredicted RBP35.42■■■■□ 3.26
SMARCB1-205ENST00000417137 ABCA6Q8N139 1617 aa35.41■■■■□ 3.26
SMARCB1-205ENST00000417137 REREQ9P2R6 1566 aa35.38■■■■□ 3.25
SMARCB1-205ENST00000417137 ABCC5O15440 1437 aa35.36■■■■□ 3.25
SMARCB1-205ENST00000417137 MLECQ14165 292 aa35.34■■■■□ 3.25
SMARCB1-205ENST00000417137 A2MP01023 1474 aa35.34■■■■□ 3.25
SMARCB1-205ENST00000417137 DAPK1P53355 1430 aa35.33■■■■□ 3.25
SMARCB1-205ENST00000417137 AGLP35573 1532 aa35.31■■■■□ 3.24
SMARCB1-205ENST00000417137 MAST1Q9Y2H9 1570 aa35.3■■■■□ 3.24
SMARCB1-205ENST00000417137 DHX29Q7Z478 1369 aaKnown RBP35.29■■■■□ 3.24
SMARCB1-205ENST00000417137 SHANK2Q9UPX8 1470 aa35.29■■■■□ 3.24
SMARCB1-205ENST00000417137 DNMT1P26358 1616 aaKnown RBP35.28■■■■□ 3.24
SMARCB1-205ENST00000417137 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.28■■■■□ 3.247e-16■■■■■ 28.1
SMARCB1-205ENST00000417137 BCORL1Q5H9F3 1711 aa35.27■■■■□ 3.24
SMARCB1-205ENST00000417137 ADGBQ8N7X0 1667 aa35.26■■■■□ 3.23
SMARCB1-205ENST00000417137 SIGLEC1Q9BZZ2 1709 aa35.25■■■■□ 3.23
SMARCB1-205ENST00000417137 CHIC2Q9UKJ5 165 aa35.23■■■■□ 3.23
SMARCB1-205ENST00000417137 ADAMTSL3P82987 1691 aa35.21■■■■□ 3.23
SMARCB1-205ENST00000417137 ANKRD30AQ9BXX3 1397 aa35.21■■■■□ 3.23
SMARCB1-205ENST00000417137 RRBP1Q9P2E9 1410 aaKnown RBP35.21■■■■□ 3.23
SMARCB1-205ENST00000417137 PLXNC1O60486 1568 aa35.19■■■■□ 3.22
SMARCB1-205ENST00000417137 ESF1Q9H501 851 aaKnown RBP35.19■■■■□ 3.22
SMARCB1-205ENST00000417137 RRP7BPQ9NSQ0 103 aa35.19■■■■□ 3.22
SMARCB1-205ENST00000417137 CROCC2H7BZ55 1655 aa35.17■■■■□ 3.22
SMARCB1-205ENST00000417137 KIF3BO15066 747 aa35.16■■■■□ 3.22
SMARCB1-205ENST00000417137 GGT6Q6P531 493 aa35.15■■■■□ 3.22
SMARCB1-205ENST00000417137 KIF15Q9NS87 1388 aa35.14■■■■□ 3.22
SMARCB1-205ENST00000417137 ITGAEP38570 1179 aa35.13■■■■□ 3.21
SMARCB1-205ENST00000417137 PPP6R1Q9UPN7 881 aa35.13■■■■□ 3.21
SMARCB1-205ENST00000417137 NCOA1Q15788 1441 aa35.11■■■■□ 3.21
SMARCB1-205ENST00000417137 DUOX2Q9NRD8 1548 aa35.11■■■■□ 3.21
SMARCB1-205ENST00000417137 MADDQ8WXG6 1647 aa35.1■■■■□ 3.21
SMARCB1-205ENST00000417137 ADGRL2O95490 1459 aa35.08■■■■□ 3.21
SMARCB1-205ENST00000417137 PTPRMP28827 1452 aa35.08■■■■□ 3.21
SMARCB1-205ENST00000417137 PTPRKQ15262 1439 aa35.06■■■■□ 3.2
SMARCB1-205ENST00000417137 ROCK1Q13464 1354 aa35.03■■■■□ 3.2
SMARCB1-205ENST00000417137 CNTLNQ9NXG0 1405 aa35.03■■■■□ 3.2
SMARCB1-205ENST00000417137 ERBINQ96RT1 1412 aa35.02■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms