RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 FGD6Q6ZV73 1430 aa14.91□□□□□ -0.02
PTPRF-204ENST00000412568 POGKQ9P215 609 aa14.9□□□□□ -0.02
PTPRF-204ENST00000412568 C14orf37Q86TY3 774 aa14.9□□□□□ -0.02
PTPRF-204ENST00000412568 ZBTB7CA1YPR0 619 aa14.89□□□□□ -0.03
PTPRF-204ENST00000412568 ERICH3Q5RHP9 1530 aa14.89□□□□□ -0.03
PTPRF-204ENST00000412568 GRIN2BQ13224 1484 aa14.89□□□□□ -0.03
PTPRF-204ENST00000412568 CCER2I3L3R5 266 aa14.88□□□□□ -0.03
PTPRF-204ENST00000412568 ZBTB47Q9UFB7 747 aaPredicted RBP14.88□□□□□ -0.03
PTPRF-204ENST00000412568 TMF1P82094 1093 aa14.87□□□□□ -0.03
PTPRF-204ENST00000412568 KANK1Q14678 1352 aa14.87□□□□□ -0.03
PTPRF-204ENST00000412568 CASKIN1Q8WXD9 1431 aa14.86□□□□□ -0.03
PTPRF-204ENST00000412568 OSCARQ8IYS5 282 aa14.86□□□□□ -0.03
PTPRF-204ENST00000412568 MYOM3Q5VTT5 1437 aa14.86□□□□□ -0.03
PTPRF-204ENST00000412568 ROCK2O75116 1388 aaKnown RBP14.86□□□□□ -0.03
PTPRF-204ENST00000412568 CDCA8Q53HL2 280 aa14.85□□□□□ -0.03
PTPRF-204ENST00000412568 ST20-MTHFSA0A0A6YYL1 179 aa14.85□□□□□ -0.03
PTPRF-204ENST00000412568 NCOA2Q15596 1464 aa14.85□□□□□ -0.03
PTPRF-204ENST00000412568 MRC2Q9UBG0 1479 aa14.84□□□□□ -0.03
PTPRF-204ENST00000412568 ANP32AP39687 249 aaKnown RBP14.83□□□□□ -0.03
PTPRF-204ENST00000412568 PEG3Q9GZU2 1588 aa14.83□□□□□ -0.04
PTPRF-204ENST00000412568 SOX12O15370 315 aa14.83□□□□□ -0.04
PTPRF-204ENST00000412568 AFAP1Q8N556 730 aa14.82□□□□□ -0.04
PTPRF-204ENST00000412568 PRDM2Q13029 1718 aa14.81□□□□□ -0.04
PTPRF-204ENST00000412568 SRPK2P78362 688 aaKnown RBP14.81□□□□□ -0.04
PTPRF-204ENST00000412568 WASHC2CQ9Y4E1 1318 aa14.8□□□□□ -0.04
PTPRF-204ENST00000412568 EIF5BO60841 1220 aaKnown RBP14.8□□□□□ -0.04
PTPRF-204ENST00000412568 RSPH4AQ5TD94 716 aa14.8□□□□□ -0.04
PTPRF-204ENST00000412568 SNAPC4Q5SXM2 1469 aa14.8□□□□□ -0.04
PTPRF-204ENST00000412568 DNMBPQ6XZF7 1577 aa14.8□□□□□ -0.04
PTPRF-204ENST00000412568 B4GALNT3Q6L9W6 998 aa14.8□□□□□ -0.04
PTPRF-204ENST00000412568 PRG4Q92954 1404 aaPredicted RBP14.8□□□□□ -0.04
PTPRF-204ENST00000412568 RRBP1Q9P2E9 1410 aaKnown RBP14.79□□□□□ -0.04
PTPRF-204ENST00000412568 U2SURPO15042 1029 aaKnown RBP14.78□□□□□ -0.04
PTPRF-204ENST00000412568 NBR1Q14596 966 aa14.77□□□□□ -0.04
PTPRF-204ENST00000412568 URB2Q14146 1524 aaKnown RBP14.77□□□□□ -0.05
PTPRF-204ENST00000412568 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
PTPRF-204ENST00000412568 TRAK1Q9UPV9 953 aa14.76□□□□□ -0.05
PTPRF-204ENST00000412568 LMOD2Q6P5Q4 547 aa14.76□□□□□ -0.05
PTPRF-204ENST00000412568 LAS1LQ9Y4W2 734 aaKnown RBP14.75□□□□□ -0.05
PTPRF-204ENST00000412568 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.75□□□□□ -0.05
PTPRF-204ENST00000412568 IFT140Q96RY7 1462 aa14.75□□□□□ -0.05
PTPRF-204ENST00000412568 ZNF608Q9ULD9 1512 aaPredicted RBP14.75□□□□□ -0.05
PTPRF-204ENST00000412568 CFAP53Q96M91 514 aa14.74□□□□□ -0.05
PTPRF-204ENST00000412568 KIF15Q9NS87 1388 aa14.74□□□□□ -0.05
PTPRF-204ENST00000412568 FYCO1Q9BQS8 1478 aa14.74□□□□□ -0.05
PTPRF-204ENST00000412568 FRAT1Q92837 279 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-204ENST00000412568 CCDC144AA2RUR9 1427 aa14.72□□□□□ -0.05
PTPRF-204ENST00000412568 CDK13Q14004 1512 aaKnown RBP14.72□□□□□ -0.05
PTPRF-204ENST00000412568 NUTM2FA1L443 756 aa14.72□□□□□ -0.05
PTPRF-204ENST00000412568 MORC1Q86VD1 984 aa14.71□□□□□ -0.05
PTPRF-204ENST00000412568 PPP4R2Q9NY27 417 aa14.71□□□□□ -0.05
PTPRF-204ENST00000412568 UACAQ9BZF9 1416 aa14.71□□□□□ -0.05
PTPRF-204ENST00000412568 ANP32EQ9BTT0 268 aa14.71□□□□□ -0.06
PTPRF-204ENST00000412568 ANKRD50Q9ULJ7 1429 aa14.7□□□□□ -0.06
PTPRF-204ENST00000412568 TIAM1Q13009 1591 aa14.69□□□□□ -0.06
PTPRF-204ENST00000412568 A0A0G2JS52 829 aa14.67□□□□□ -0.06
PTPRF-204ENST00000412568 LAMC3Q9Y6N6 1575 aa14.67□□□□□ -0.06
PTPRF-204ENST00000412568 USP47Q96K76 1375 aa14.67□□□□□ -0.06
PTPRF-204ENST00000412568 FAM69CQ0P6D2 419 aa14.67□□□□□ -0.06
PTPRF-204ENST00000412568 PANK3Q9H999 370 aa14.67□□□□□ -0.06
PTPRF-204ENST00000412568 KTN1Q86UP2 1357 aaKnown RBP14.67□□□□□ -0.06
PTPRF-204ENST00000412568 PRKRIP1Q9H875 184 aaPredicted RBP14.67□□□□□ -0.06
PTPRF-204ENST00000412568 NBPF8Q3BBV2 869 aa14.66□□□□□ -0.06
PTPRF-204ENST00000412568 PLB1Q6P1J6 1458 aa14.65□□□□□ -0.06
PTPRF-204ENST00000412568 MAPK8IP3Q9UPT6 1336 aa14.65□□□□□ -0.06
PTPRF-204ENST00000412568 CCDC146Q8IYE0 955 aa14.65□□□□□ -0.06
PTPRF-204ENST00000412568 NUDCQ9Y266 331 aa14.64□□□□□ -0.07
PTPRF-204ENST00000412568 EFCAB5A4FU69 1503 aa14.64□□□□□ -0.07
PTPRF-204ENST00000412568 RGS3P49796 1198 aa14.63□□□□□ -0.07
PTPRF-204ENST00000412568 PCF11O94913 1555 aaKnown RBP14.62□□□□□ -0.07
PTPRF-204ENST00000412568 KIAA0586Q9BVV6 1533 aa14.62□□□□□ -0.07
PTPRF-204ENST00000412568 WASHC2AQ641Q2 1341 aa14.62□□□□□ -0.07
PTPRF-204ENST00000412568 NBPF1Q3BBV0 1214 aa14.62□□□□□ -0.07
PTPRF-204ENST00000412568 TSHZ2Q9NRE2 1034 aa14.62□□□□□ -0.07
PTPRF-204ENST00000412568 EPRSP07814 1512 aaKnown RBP14.61□□□□□ -0.07
PTPRF-204ENST00000412568 KIF7Q2M1P5 1343 aa14.61□□□□□ -0.07
PTPRF-204ENST00000412568 U2AF1L5P0DN76 240 aaPredicted RBP14.61□□□□□ -0.07
PTPRF-204ENST00000412568 U2AF1Q01081 240 aaKnown RBP eCLIP14.61□□□□□ -0.07
PTPRF-204ENST00000412568 TROQ12816 1431 aaPredicted RBP14.61□□□□□ -0.07
PTPRF-204ENST00000412568 RBM19Q9Y4C8 960 aaKnown RBP14.6□□□□□ -0.07
PTPRF-204ENST00000412568 SYNJ2O15056 1496 aa14.6□□□□□ -0.07
PTPRF-204ENST00000412568 RALBP1Q15311 655 aa14.59□□□□□ -0.07
PTPRF-204ENST00000412568 TMEM132EQ6IEE7 984 aa14.59□□□□□ -0.07
PTPRF-204ENST00000412568 RAPGEF3O95398 923 aa14.59□□□□□ -0.07
PTPRF-204ENST00000412568 BIVM-ERCC5R4GMW8 1640 aa14.58□□□□□ -0.07
PTPRF-204ENST00000412568 NLRP13Q86W25 1043 aa14.58□□□□□ -0.08
PTPRF-204ENST00000412568 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.58□□□□□ -0.08
PTPRF-204ENST00000412568 ARHGAP5Q13017 1502 aa14.58□□□□□ -0.08
PTPRF-204ENST00000412568 FTSJ3Q8IY81 847 aaKnown RBP14.58□□□□□ -0.08
PTPRF-204ENST00000412568 HFM1A2PYH4 1435 aa14.57□□□□□ -0.08
PTPRF-204ENST00000412568 NAIPQ13075 1403 aa14.57□□□□□ -0.08
PTPRF-204ENST00000412568 IQGAP2Q13576 1575 aa14.56□□□□□ -0.08
PTPRF-204ENST00000412568 MINK1Q8N4C8 1332 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-204ENST00000412568 UPF2Q9HAU5 1272 aaKnown RBP14.56□□□□□ -0.08
PTPRF-204ENST00000412568 RRP7AQ9Y3A4 280 aaKnown RBP14.56□□□□□ -0.08
PTPRF-204ENST00000412568 HDGFP51858 240 aaKnown RBP14.55□□□□□ -0.08
PTPRF-204ENST00000412568 CFAP70Q5T0N1 1121 aa14.55□□□□□ -0.08
PTPRF-204ENST00000412568 PAK3O75914 559 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-204ENST00000412568 GRIN2AQ12879 1464 aa14.55□□□□□ -0.08
PTPRF-204ENST00000412568 HSP90AA1P07900 732 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms