RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 KCNH8Q96L42 1107 aa6.9□□□□□ -1.3
HERC4-205ENST00000412272 PPP4R2Q9NY27 417 aa6.9□□□□□ -1.3
HERC4-205ENST00000412272 BAZ1AQ9NRL2 1556 aaPredicted RBP6.9□□□□□ -1.3
HERC4-205ENST00000412272 MYCNP04198 464 aaPredicted RBP6.9□□□□□ -1.3
HERC4-205ENST00000412272 CLCN1P35523 988 aa6.9□□□□□ -1.3
HERC4-205ENST00000412272 CLGNO14967 610 aa6.9□□□□□ -1.31
HERC4-205ENST00000412272 PNNQ9H307 717 aaKnown RBP6.9□□□□□ -1.31
HERC4-205ENST00000412272 HDAC5Q9UQL6 1122 aa6.89□□□□□ -1.31
HERC4-205ENST00000412272 GOLGA3Q08378 1498 aa6.89□□□□□ -1.31
HERC4-205ENST00000412272 CEP164Q9UPV0 1460 aa6.89□□□□□ -1.31
HERC4-205ENST00000412272 BAZ1BQ9UIG0 1483 aaKnown RBP6.89□□□□□ -1.31
HERC4-205ENST00000412272 PPP1R15AO75807 674 aaPredicted RBP6.88□□□□□ -1.31
HERC4-205ENST00000412272 CLSTN1O94985 981 aa6.88□□□□□ -1.31
HERC4-205ENST00000412272 ANP32AP39687 249 aaKnown RBP6.88□□□□□ -1.31
HERC4-205ENST00000412272 DMTNQ08495 405 aa6.88□□□□□ -1.31
HERC4-205ENST00000412272 VPS8Q8N3P4 1428 aa6.88□□□□□ -1.31
HERC4-205ENST00000412272 RRBP1Q9P2E9 1410 aaKnown RBP6.88□□□□□ -1.31
HERC4-205ENST00000412272 MAPKBP1O60336 1514 aa6.88□□□□□ -1.31
HERC4-205ENST00000412272 MAPK8IP2Q13387 824 aaPredicted RBP6.87□□□□□ -1.31
HERC4-205ENST00000412272 LAS1LQ9Y4W2 734 aaKnown RBP6.87□□□□□ -1.31
HERC4-205ENST00000412272 PATL2C9JE40 543 aaKnown RBP6.87□□□□□ -1.31
HERC4-205ENST00000412272 PUS7Q96PZ0 661 aaKnown RBP6.87□□□□□ -1.31
HERC4-205ENST00000412272 SOX12O15370 315 aa6.87□□□□□ -1.31
HERC4-205ENST00000412272 PLCD4Q9BRC7 762 aa6.87□□□□□ -1.31
HERC4-205ENST00000412272 PTMAP06454 111 aaKnown RBP6.86□□□□□ -1.31
HERC4-205ENST00000412272 MCCP23508 829 aa6.86□□□□□ -1.31
HERC4-205ENST00000412272 ZNF622Q969S3 477 aaKnown RBP eCLIP6.86□□□□□ -1.31
HERC4-205ENST00000412272 TPM2P07951 284 aa6.85□□□□□ -1.31
HERC4-205ENST00000412272 NGEFQ8N5V2 710 aa6.85□□□□□ -1.31
HERC4-205ENST00000412272 HMGB1P09429 215 aaKnown RBP6.84□□□□□ -1.32
HERC4-205ENST00000412272 PRDM16Q9HAZ2 1276 aa6.84□□□□□ -1.32
HERC4-205ENST00000412272 ARID3AQ99856 593 aa6.83□□□□□ -1.32
HERC4-205ENST00000412272 ABCC8Q09428 1581 aa6.83□□□□□ -1.32
HERC4-205ENST00000412272 CLIP1P30622 1438 aa6.82□□□□□ -1.32
HERC4-205ENST00000412272 PHF14O94880 888 aa6.82□□□□□ -1.32
HERC4-205ENST00000412272 ZSCAN20P17040 1043 aaPredicted RBP6.82□□□□□ -1.32
HERC4-205ENST00000412272 ANP32BQ92688 251 aaKnown RBP6.82□□□□□ -1.32
HERC4-205ENST00000412272 E9PSI1 815 aa6.82□□□□□ -1.32
HERC4-205ENST00000412272 AXDND1Q5T1B0 1012 aaPredicted RBP6.82□□□□□ -1.32
HERC4-205ENST00000412272 RNF123Q5XPI4 1314 aa6.81□□□□□ -1.32
HERC4-205ENST00000412272 CARD10Q9BWT7 1032 aa6.81□□□□□ -1.32
HERC4-205ENST00000412272 NFKBIBQ15653 356 aa6.81□□□□□ -1.32
HERC4-205ENST00000412272 WDR97A6NE52 1622 aa6.81□□□□□ -1.32
HERC4-205ENST00000412272 KIF20AO95235 890 aa6.81□□□□□ -1.32
HERC4-205ENST00000412272 ZBTB22O15209 634 aa6.8□□□□□ -1.32
HERC4-205ENST00000412272 CERS3Q8IU89 383 aa6.8□□□□□ -1.32
HERC4-205ENST00000412272 SLC20A2Q08357 652 aa6.8□□□□□ -1.32
HERC4-205ENST00000412272 SYNJ1O43426 1573 aa6.8□□□□□ -1.32
HERC4-205ENST00000412272 MAP7D2Q96T17 732 aa6.79□□□□□ -1.32
HERC4-205ENST00000412272 EGFL6Q8IUX8 553 aa6.79□□□□□ -1.32
HERC4-205ENST00000412272 POLR1AO95602 1720 aaPredicted RBP6.79□□□□□ -1.32
HERC4-205ENST00000412272 CCDC88BA6NC98 1476 aa6.79□□□□□ -1.32
HERC4-205ENST00000412272 APPP05067 770 aa6.79□□□□□ -1.32
HERC4-205ENST00000412272 ABCA5Q8WWZ7 1642 aa6.78□□□□□ -1.32
HERC4-205ENST00000412272 PLCB2Q00722 1185 aa6.78□□□□□ -1.32
HERC4-205ENST00000412272 P3H3Q8IVL6 736 aa6.78□□□□□ -1.32
HERC4-205ENST00000412272 PRR29P0C7W0 189 aa6.78□□□□□ -1.32
HERC4-205ENST00000412272 PSMD1Q99460 953 aa6.78□□□□□ -1.32
HERC4-205ENST00000412272 RIPK4P57078 832 aa6.77□□□□□ -1.32
HERC4-205ENST00000412272 DNTTIP2Q5QJE6 756 aaKnown RBP6.77□□□□□ -1.33
HERC4-205ENST00000412272 SH3BP1Q9Y3L3 701 aa6.77□□□□□ -1.33
HERC4-205ENST00000412272 NCOA2Q15596 1464 aa6.77□□□□□ -1.33
HERC4-205ENST00000412272 IRF6O14896 467 aa6.77□□□□□ -1.33
HERC4-205ENST00000412272 CHMP4CQ96CF2 233 aa6.77□□□□□ -1.33
HERC4-205ENST00000412272 WIZO95785 1651 aa6.76□□□□□ -1.33
HERC4-205ENST00000412272 TAF3Q5VWG9 929 aa6.76□□□□□ -1.33
HERC4-205ENST00000412272 MAP3K1Q13233 1512 aa6.75□□□□□ -1.33
HERC4-205ENST00000412272 OS9Q13438 667 aaPredicted RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 ANP32CO43423 234 aa6.75□□□□□ -1.33
HERC4-205ENST00000412272 TRHP20396 242 aaPredicted RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 ZNF692Q9BU19 519 aaPredicted RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 YY1AP1Q9H869 796 aa6.75□□□□□ -1.33
HERC4-205ENST00000412272 GEMIN8Q9NWZ8 242 aaKnown RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 SMG6Q86US8 1419 aaKnown RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 TOP2AP11388 1531 aaKnown RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 LETM1O95202 739 aaPredicted RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 PTMSP20962 102 aa6.75□□□□□ -1.33
HERC4-205ENST00000412272 GTPBP4Q9BZE4 634 aaKnown RBP6.75□□□□□ -1.33
HERC4-205ENST00000412272 NPM1P06748 294 aaKnown RBP eCLIP6.74□□□□□ -1.33
HERC4-205ENST00000412272 IRX5P78411 483 aaPredicted RBP6.74□□□□□ -1.33
HERC4-205ENST00000412272 DNAJC2Q99543 621 aaKnown RBP6.74□□□□□ -1.33
HERC4-205ENST00000412272 MROH2BQ7Z745 1585 aa6.74□□□□□ -1.33
HERC4-205ENST00000412272 CDCA8Q53HL2 280 aa6.74□□□□□ -1.33
HERC4-205ENST00000412272 B4GALNT3Q6L9W6 998 aa6.74□□□□□ -1.33
HERC4-205ENST00000412272 SETQ01105 290 aaPredicted RBP6.74□□□□□ -1.33
HERC4-205ENST00000412272 NBPF20Q3BBV1 942 aa6.74□□□□□ -1.33
HERC4-205ENST00000412272 ZBED9Q6R2W3 1325 aa6.73□□□□□ -1.33
HERC4-205ENST00000412272 SOGA1O94964 1423 aa6.73□□□□□ -1.33
HERC4-205ENST00000412272 RALBP1Q15311 655 aa6.73□□□□□ -1.33
HERC4-205ENST00000412272 CC2D1BQ5T0F9 858 aaKnown RBP6.73□□□□□ -1.33
HERC4-205ENST00000412272 HNRNPUL2Q1KMD3 747 aaKnown RBP6.73□□□□□ -1.33
HERC4-205ENST00000412272 AEBP1Q8IUX7 1158 aa6.73□□□□□ -1.33
HERC4-205ENST00000412272 MS4A1P11836 297 aa6.73□□□□□ -1.33
HERC4-205ENST00000412272 TRIM52Q96A61 297 aa6.73□□□□□ -1.33
HERC4-205ENST00000412272 ERICH3Q5RHP9 1530 aa6.72□□□□□ -1.33
HERC4-205ENST00000412272 CC2D2BQ6DHV5 1058 aa6.72□□□□□ -1.33
HERC4-205ENST00000412272 SEMA3FQ13275 785 aa6.72□□□□□ -1.33
HERC4-205ENST00000412272 ANAPC15P60006 121 aa6.72□□□□□ -1.33
HERC4-205ENST00000412272 CEP120Q8N960 986 aa6.72□□□□□ -1.33
HERC4-205ENST00000412272 ERBB4Q15303 1308 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms