RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 ARID4BQ4LE39 1312 aaPredicted RBP24.02■■□□□ 1.44
CBX3-203ENST00000409747 ZFYVE16Q7Z3T8 1539 aa24.01■■□□□ 1.43
CBX3-203ENST00000409747 EFCAB2Q5VUJ9 269 aa24■■□□□ 1.43
CBX3-203ENST00000409747 POGZQ7Z3K3 1410 aa24■■□□□ 1.43
CBX3-203ENST00000409747 SCAPERQ9BY12 1400 aa23.99■■□□□ 1.43
CBX3-203ENST00000409747 FYCO1Q9BQS8 1478 aa23.98■■□□□ 1.43
CBX3-203ENST00000409747 PTPRMP28827 1452 aa23.97■■□□□ 1.43
CBX3-203ENST00000409747 ARHGAP5Q13017 1502 aa23.96■■□□□ 1.43
CBX3-203ENST00000409747 MADDQ8WXG6 1647 aa23.95■■□□□ 1.42
CBX3-203ENST00000409747 YEATS2Q9ULM3 1422 aa23.93■■□□□ 1.42
CBX3-203ENST00000409747 ZNF518AQ6AHZ1 1483 aa23.91■■□□□ 1.42
CBX3-203ENST00000409747 PREX2Q70Z35 1606 aa23.89■■□□□ 1.42
CBX3-203ENST00000409747 CDC42BPBQ9Y5S2 1711 aa23.88■■□□□ 1.41
CBX3-203ENST00000409747 RIMS1Q86UR5 1692 aaKnown RBP23.87■■□□□ 1.41
CBX3-203ENST00000409747 KDM5CP41229 1560 aa23.86■■□□□ 1.41
CBX3-203ENST00000409747 ATP10AO60312 1499 aa23.85■■□□□ 1.41
CBX3-203ENST00000409747 C9orf84Q5VXU9 1444 aa23.85■■□□□ 1.41
CBX3-203ENST00000409747 SIGLEC1Q9BZZ2 1709 aa23.85■■□□□ 1.41
CBX3-203ENST00000409747 ABCC1P33527 1531 aa23.81■■□□□ 1.4
CBX3-203ENST00000409747 CDC42BPAQ5VT25 1732 aa23.81■■□□□ 1.4
CBX3-203ENST00000409747 FER1L4A9Z1Z3 1794 aa23.79■■□□□ 1.4
CBX3-203ENST00000409747 AFAP1Q8N556 730 aa23.78■■□□□ 1.4
CBX3-203ENST00000409747 ITSN2Q9NZM3 1697 aa23.78■■□□□ 1.4
CBX3-203ENST00000409747 MLH3Q9UHC1 1453 aa23.76■■□□□ 1.39
CBX3-203ENST00000409747 MYT1LQ9UL68 1186 aa23.76■■□□□ 1.39
CBX3-203ENST00000409747 MLECQ14165 292 aa23.75■■□□□ 1.39
CBX3-203ENST00000409747 ARHGEF12Q9NZN5 1544 aa23.75■■□□□ 1.39
CBX3-203ENST00000409747 REREQ9P2R6 1566 aa23.75■■□□□ 1.39
CBX3-203ENST00000409747 DIP2CQ9Y2E4 1556 aa23.74■■□□□ 1.39
CBX3-203ENST00000409747 LMTK3Q96Q04 1460 aa23.73■■□□□ 1.39
CBX3-203ENST00000409747 CEP162Q5TB80 1403 aa23.72■■□□□ 1.39
CBX3-203ENST00000409747 TRAPPC8Q9Y2L5 1435 aa23.72■■□□□ 1.39
CBX3-203ENST00000409747 ABCA6Q8N139 1617 aa23.71■■□□□ 1.39
CBX3-203ENST00000409747 MTUS2Q5JR59 1369 aa23.71■■□□□ 1.39
CBX3-203ENST00000409747 GPATCH8Q9UKJ3 1502 aaKnown RBP23.71■■□□□ 1.39
CBX3-203ENST00000409747 SAMD9LQ8IVG5 1584 aa23.69■■□□□ 1.38
CBX3-203ENST00000409747 CCNB3Q8WWL7 1395 aa23.67■■□□□ 1.38
CBX3-203ENST00000409747 EHBP1L1Q8N3D4 1523 aa23.66■■□□□ 1.38
CBX3-203ENST00000409747 PLPPR3Q6T4P5 718 aa23.66■■□□□ 1.38
CBX3-203ENST00000409747 PLEKHH2Q8IVE3 1493 aa23.66■■□□□ 1.38
CBX3-203ENST00000409747 SYCP2Q9BX26 1530 aa23.66■■□□□ 1.38
CBX3-203ENST00000409747 ZNF777Q9ULD5 760 aaPredicted RBP23.65■■□□□ 1.38
CBX3-203ENST00000409747 AGLP35573 1532 aa23.65■■□□□ 1.38
CBX3-203ENST00000409747 KIDINS220Q9ULH0 1771 aa23.65■■□□□ 1.38
CBX3-203ENST00000409747 ILDR1Q86SU0 546 aaPredicted RBP23.62■■□□□ 1.37
CBX3-203ENST00000409747 CFDP1Q9UEE9 299 aaPredicted RBP23.62■■□□□ 1.37
CBX3-203ENST00000409747 KIAA1107Q9UPP5 1409 aa23.62■■□□□ 1.37
CBX3-203ENST00000409747 PREX1Q8TCU6 1659 aa23.59■■□□□ 1.37
CBX3-203ENST00000409747 TIAM1Q13009 1591 aa23.58■■□□□ 1.37
CBX3-203ENST00000409747 SPAG9O60271 1321 aaKnown RBP23.58■■□□□ 1.36
CBX3-203ENST00000409747 ATP7AQ04656 1500 aa23.56■■□□□ 1.36
CBX3-203ENST00000409747 HNRNPMP52272 730 aaKnown RBP eCLIP23.56■■□□□ 1.369e-8■□□□□ 11.2
CBX3-203ENST00000409747 ESF1Q9H501 851 aaKnown RBP23.55■■□□□ 1.36
CBX3-203ENST00000409747 INO80Q9ULG1 1556 aaPredicted RBP23.54■■□□□ 1.36
CBX3-203ENST00000409747 HSPA2P54652 639 aa23.53■■□□□ 1.36
CBX3-203ENST00000409747 SUPT6HQ7KZ85 1726 aaKnown RBP23.52■■□□□ 1.36
CBX3-203ENST00000409747 CNTLNQ9NXG0 1405 aa23.52■■□□□ 1.36
CBX3-203ENST00000409747 CEBPAP49715 358 aaPredicted RBP23.51■■□□□ 1.35
CBX3-203ENST00000409747 C3P01024 1663 aa23.51■■□□□ 1.35
CBX3-203ENST00000409747 UHRF1BP1Q6BDS2 1440 aa23.49■■□□□ 1.35
CBX3-203ENST00000409747 VPS8Q8N3P4 1428 aa23.48■■□□□ 1.35
CBX3-203ENST00000409747 PLXNC1O60486 1568 aa23.48■■□□□ 1.35
CBX3-203ENST00000409747 SETD1BQ9UPS6 1966 aaKnown RBP23.48■■□□□ 1.35
CBX3-203ENST00000409747 A2MP01023 1474 aa23.47■■□□□ 1.35
CBX3-203ENST00000409747 NCOA2Q15596 1464 aa23.47■■□□□ 1.35
CBX3-203ENST00000409747 ADGBQ8N7X0 1667 aa23.46■■□□□ 1.35
CBX3-203ENST00000409747 MROH2AA6NES4 1674 aa23.46■■□□□ 1.35
CBX3-203ENST00000409747 MBD5Q9P267 1494 aa23.45■■□□□ 1.34
CBX3-203ENST00000409747 ZNF644Q9H582 1327 aaPredicted RBP23.44■■□□□ 1.34
CBX3-203ENST00000409747 LOC105371045A0A1W2PR82 267 aa23.43■■□□□ 1.34
CBX3-203ENST00000409747 RTEL1-TNFRSF6BF6WH68 1400 aa23.42■■□□□ 1.34
CBX3-203ENST00000409747 FBXO41Q8TF61 875 aa23.41■■□□□ 1.34
CBX3-203ENST00000409747 CAMSAP2Q08AD1 1489 aa23.4■■□□□ 1.34
CBX3-203ENST00000409747 CCDC141Q6ZP82 1450 aa23.4■■□□□ 1.34
CBX3-203ENST00000409747 LRRC9Q6ZRR7 1453 aa23.39■■□□□ 1.33
CBX3-203ENST00000409747 MAP3K1Q13233 1512 aa23.38■■□□□ 1.33
CBX3-203ENST00000409747 NPATQ14207 1427 aa23.38■■□□□ 1.33
CBX3-203ENST00000409747 RSPH4AQ5TD94 716 aa23.37■■□□□ 1.33
CBX3-203ENST00000409747 CLTCQ00610 1675 aaKnown RBP23.36■■□□□ 1.33
CBX3-203ENST00000409747 DMRT2Q9Y5R5 561 aa23.35■■□□□ 1.33
CBX3-203ENST00000409747 ZMYM3Q14202 1370 aa23.34■■□□□ 1.33
CBX3-203ENST00000409747 PPP6R1Q9UPN7 881 aa23.34■■□□□ 1.33
CBX3-203ENST00000409747 ARHGEF5Q12774 1597 aa23.34■■□□□ 1.33
CBX3-203ENST00000409747 STRCQ7RTU9 1775 aa23.33■■□□□ 1.33
CBX3-203ENST00000409747 GGT6Q6P531 493 aa23.32■■□□□ 1.32
CBX3-203ENST00000409747 DHX29Q7Z478 1369 aaKnown RBP23.32■■□□□ 1.32
CBX3-203ENST00000409747 FAM135AQ9P2D6 1515 aa23.27■■□□□ 1.32
CBX3-203ENST00000409747 TSPY4P0CV99 314 aa23.26■■□□□ 1.31
CBX3-203ENST00000409747 TSPY10P0CW01 314 aa23.26■■□□□ 1.31
CBX3-203ENST00000409747 MYO3AQ8NEV4 1616 aa23.25■■□□□ 1.31
CBX3-203ENST00000409747 PTPRTO14522 1441 aa23.25■■□□□ 1.31
CBX3-203ENST00000409747 MIA2Q96PC5 1412 aa23.25■■□□□ 1.31
CBX3-203ENST00000409747 ZNF142P52746 1687 aaPredicted RBP23.24■■□□□ 1.31
CBX3-203ENST00000409747 PTPRKQ15262 1439 aa23.24■■□□□ 1.31
CBX3-203ENST00000409747 MYOM3Q5VTT5 1437 aa23.24■■□□□ 1.31
CBX3-203ENST00000409747 CERKQ8TCT0 537 aa23.24■■□□□ 1.31
CBX3-203ENST00000409747 NCOA1Q15788 1441 aa23.23■■□□□ 1.31
CBX3-203ENST00000409747 KANK4Q5T7N3 995 aaPredicted RBP23.23■■□□□ 1.31
CBX3-203ENST00000409747 MAST1Q9Y2H9 1570 aa23.22■■□□□ 1.31
CBX3-203ENST00000409747 KDM5DQ9BY66 1539 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms