RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 FOXD1Q16676 465 aa21.88■■□□□ 1.09
HOXA3-202ENST00000396352 ABCC5O15440 1437 aa21.88■■□□□ 1.09
HOXA3-202ENST00000396352 NCOA1Q15788 1441 aa21.88■■□□□ 1.09
HOXA3-202ENST00000396352 ANKRD30BQ9BXX2 1392 aa21.87■■□□□ 1.09
HOXA3-202ENST00000396352 HNRNPUQ00839 825 aaKnown RBP eCLIP21.87■■□□□ 1.093e-10■■■□□ 17.9
HOXA3-202ENST00000396352 NUP153P49790 1475 aaKnown RBP21.87■■□□□ 1.09
HOXA3-202ENST00000396352 POLR1AO95602 1720 aaPredicted RBP21.86■■□□□ 1.09
HOXA3-202ENST00000396352 RAPGEF6Q8TEU7 1601 aa21.86■■□□□ 1.09
HOXA3-202ENST00000396352 ZNF608Q9ULD9 1512 aaPredicted RBP21.85■■□□□ 1.09
HOXA3-202ENST00000396352 ANP32EQ9BTT0 268 aa21.85■■□□□ 1.09
HOXA3-202ENST00000396352 KIAA0586Q9BVV6 1533 aa21.84■■□□□ 1.09
HOXA3-202ENST00000396352 C11orf95C9JLR9 678 aaPredicted RBP21.83■■□□□ 1.08
HOXA3-202ENST00000396352 CCDC7Q96M83 1385 aa21.83■■□□□ 1.08
HOXA3-202ENST00000396352 IFT140Q96RY7 1462 aa21.82■■□□□ 1.08
HOXA3-202ENST00000396352 RBM19Q9Y4C8 960 aaKnown RBP21.81■■□□□ 1.08
HOXA3-202ENST00000396352 ZNF644Q9H582 1327 aaPredicted RBP21.8■■□□□ 1.08
HOXA3-202ENST00000396352 NBPF8Q3BBV2 869 aa21.79■■□□□ 1.08
HOXA3-202ENST00000396352 SPATA31E1Q6ZUB1 1445 aa21.79■■□□□ 1.08
HOXA3-202ENST00000396352 CCDC184Q52MB2 194 aa21.79■■□□□ 1.08
HOXA3-202ENST00000396352 ADGBQ8N7X0 1667 aa21.76■■□□□ 1.07
HOXA3-202ENST00000396352 GRIN2AQ12879 1464 aa21.76■■□□□ 1.07
HOXA3-202ENST00000396352 PRKRIP1Q9H875 184 aaPredicted RBP21.75■■□□□ 1.07
HOXA3-202ENST00000396352 PZPP20742 1482 aa21.75■■□□□ 1.07
HOXA3-202ENST00000396352 ITSN2Q9NZM3 1697 aa21.74■■□□□ 1.07
HOXA3-202ENST00000396352 EIF4G3O43432 1585 aaKnown RBP21.74■■□□□ 1.07
HOXA3-202ENST00000396352 CAMSAP2Q08AD1 1489 aa21.73■■□□□ 1.07
HOXA3-202ENST00000396352 CROCC2H7BZ55 1655 aa21.73■■□□□ 1.07
HOXA3-202ENST00000396352 ADCY10Q96PN6 1610 aa21.72■■□□□ 1.07
HOXA3-202ENST00000396352 SLC4A1APQ9BWU0 796 aaKnown RBP21.71■■□□□ 1.07
HOXA3-202ENST00000396352 MBD5Q9P267 1494 aa21.7■■□□□ 1.06
HOXA3-202ENST00000396352 TROQ12816 1431 aaPredicted RBP21.7■■□□□ 1.06
HOXA3-202ENST00000396352 KIF7Q2M1P5 1343 aa21.7■■□□□ 1.06
HOXA3-202ENST00000396352 PRG4Q92954 1404 aaPredicted RBP21.7■■□□□ 1.06
HOXA3-202ENST00000396352 IRX6P78412 446 aaPredicted RBP21.69■■□□□ 1.06
HOXA3-202ENST00000396352 KIF14Q15058 1648 aa21.68■■□□□ 1.06
HOXA3-202ENST00000396352 CDK11AQ9UQ88 783 aaPredicted RBP21.68■■□□□ 1.06
HOXA3-202ENST00000396352 ADGRL2O95490 1459 aa21.67■■□□□ 1.06
HOXA3-202ENST00000396352 GPATCH8Q9UKJ3 1502 aaKnown RBP21.66■■□□□ 1.06
HOXA3-202ENST00000396352 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
HOXA3-202ENST00000396352 PLB1Q6P1J6 1458 aa21.64■■□□□ 1.06
HOXA3-202ENST00000396352 MRS2Q9HD23 443 aa21.64■■□□□ 1.05
HOXA3-202ENST00000396352 ZBED9Q6R2W3 1325 aa21.63■■□□□ 1.05
HOXA3-202ENST00000396352 BCORL1Q5H9F3 1711 aa21.63■■□□□ 1.05
HOXA3-202ENST00000396352 ERICH6BQ5W0A0 696 aa21.63■■□□□ 1.05
HOXA3-202ENST00000396352 FAM9BQ8IZU0 186 aa21.62■■□□□ 1.05
HOXA3-202ENST00000396352 KIAA1107Q9UPP5 1409 aa21.62■■□□□ 1.05
HOXA3-202ENST00000396352 CFDP1Q9UEE9 299 aaPredicted RBP21.61■■□□□ 1.05
HOXA3-202ENST00000396352 MAGI1Q96QZ7 1491 aaPredicted RBP21.6■■□□□ 1.05
HOXA3-202ENST00000396352 KDM5CP41229 1560 aa21.59■■□□□ 1.05
HOXA3-202ENST00000396352 DHX29Q7Z478 1369 aaKnown RBP21.58■■□□□ 1.05
HOXA3-202ENST00000396352 CDC42BPAQ5VT25 1732 aa21.57■■□□□ 1.04
HOXA3-202ENST00000396352 PPP4R2Q9NY27 417 aa21.56■■□□□ 1.04
HOXA3-202ENST00000396352 SYNJ2O15056 1496 aa21.55■■□□□ 1.04
HOXA3-202ENST00000396352 USP47Q96K76 1375 aa21.54■■□□□ 1.04
HOXA3-202ENST00000396352 MSH5O43196 834 aa21.53■■□□□ 1.04
HOXA3-202ENST00000396352 ANKRD30AQ9BXX3 1397 aa21.53■■□□□ 1.04
HOXA3-202ENST00000396352 PKD2Q13563 968 aa21.51■■□□□ 1.03
HOXA3-202ENST00000396352 ANKRD50Q9ULJ7 1429 aa21.51■■□□□ 1.03
HOXA3-202ENST00000396352 FANCIQ9NVI1 1328 aa21.51■■□□□ 1.03
HOXA3-202ENST00000396352 ZNF777Q9ULD5 760 aaPredicted RBP21.51■■□□□ 1.03
HOXA3-202ENST00000396352 SHANK2Q9UPX8 1470 aa21.5■■□□□ 1.03
HOXA3-202ENST00000396352 UHRF1BP1Q6BDS2 1440 aa21.5■■□□□ 1.03
HOXA3-202ENST00000396352 ABCC10Q5T3U5 1492 aa21.49■■□□□ 1.03
HOXA3-202ENST00000396352 NUP160Q12769 1436 aa21.49■■□□□ 1.03
HOXA3-202ENST00000396352 ABCA8O94911 1581 aa21.49■■□□□ 1.03
HOXA3-202ENST00000396352 RALGAPBQ86X10 1494 aa21.48■■□□□ 1.03
HOXA3-202ENST00000396352 KDM5DQ9BY66 1539 aa21.48■■□□□ 1.03
HOXA3-202ENST00000396352 CARMIL2Q6F5E8 1435 aa21.48■■□□□ 1.03
HOXA3-202ENST00000396352 CHMP7Q8WUX9 453 aaPredicted RBP21.47■■□□□ 1.03
HOXA3-202ENST00000396352 ARHGEF12Q9NZN5 1544 aa21.46■■□□□ 1.03
HOXA3-202ENST00000396352 ARID4BQ4LE39 1312 aaPredicted RBP21.46■■□□□ 1.03
HOXA3-202ENST00000396352 SMG6Q86US8 1419 aaKnown RBP21.45■■□□□ 1.02
HOXA3-202ENST00000396352 C9orf84Q5VXU9 1444 aa21.45■■□□□ 1.02
HOXA3-202ENST00000396352 ZNF326Q5BKZ1 582 aaKnown RBP21.44■■□□□ 1.02
HOXA3-202ENST00000396352 JPH4Q96JJ6 628 aa21.42■■□□□ 1.02
HOXA3-202ENST00000396352 ATP10BO94823 1461 aa21.42■■□□□ 1.02
HOXA3-202ENST00000396352 B4GALNT3Q6L9W6 998 aa21.41■■□□□ 1.02
HOXA3-202ENST00000396352 NUP155O75694 1391 aa21.41■■□□□ 1.02
HOXA3-202ENST00000396352 PTPRGP23470 1445 aa21.39■■□□□ 1.01
HOXA3-202ENST00000396352 ERCC6Q03468 1493 aa21.39■■□□□ 1.01
HOXA3-202ENST00000396352 ROCK2O75116 1388 aaKnown RBP21.39■■□□□ 1.01
HOXA3-202ENST00000396352 ARHGEF5Q12774 1597 aa21.38■■□□□ 1.01
HOXA3-202ENST00000396352 E9PCH4 1651 aa21.38■■□□□ 1.01
HOXA3-202ENST00000396352 FBLN2P98095 1184 aa21.37■■□□□ 1.01
HOXA3-202ENST00000396352 POLR3GLQ9BT43 218 aa21.37■■□□□ 1.01
HOXA3-202ENST00000396352 PLEKHD1A6NEE1 506 aa21.37■■□□□ 1.01
HOXA3-202ENST00000396352 RNF123Q5XPI4 1314 aa21.36■■□□□ 1.01
HOXA3-202ENST00000396352 NUDCQ9Y266 331 aa21.35■■□□□ 1.01
HOXA3-202ENST00000396352 CNGB1Q14028 1251 aaPredicted RBP21.34■■□□□ 1.01
HOXA3-202ENST00000396352 CARD11Q9BXL7 1154 aa21.33■■□□□ 1.01
HOXA3-202ENST00000396352 KIF15Q9NS87 1388 aa21.33■■□□□ 1.01
HOXA3-202ENST00000396352 PNISRQ8TF01 805 aaKnown RBP21.33■■□□□ 1.01
HOXA3-202ENST00000396352 CDC42BPBQ9Y5S2 1711 aa21.31■■□□□ 1
HOXA3-202ENST00000396352 SAMD9LQ8IVG5 1584 aa21.31■■□□□ 1
HOXA3-202ENST00000396352 PREX2Q70Z35 1606 aa21.3■■□□□ 1
HOXA3-202ENST00000396352 TSPY4P0CV99 314 aa21.29■■□□□ 1
HOXA3-202ENST00000396352 TSPY10P0CW01 314 aa21.29■■□□□ 1
HOXA3-202ENST00000396352 LRPPRCP42704 1394 aaKnown RBP21.29■■□□□ 1
HOXA3-202ENST00000396352 FAM135AQ9P2D6 1515 aa21.29■■□□□ 1
HOXA3-202ENST00000396352 TRPM1Q7Z4N2 1603 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms