RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 MYO5CQ9NQX4 1742 aa30.42■■■□□ 2.46
HDDC3-202ENST00000394272 NPM1P06748 294 aaKnown RBP eCLIP30.4■■■□□ 2.46
HDDC3-202ENST00000394272 SETD5Q9C0A6 1442 aa30.38■■■□□ 2.45
HDDC3-202ENST00000394272 DAPK1P53355 1430 aa30.37■■■□□ 2.45
HDDC3-202ENST00000394272 CYB5RLQ6IPT4 315 aa30.37■■■□□ 2.45
HDDC3-202ENST00000394272 CCER1Q8TC90 406 aaPredicted RBP30.36■■■□□ 2.45
HDDC3-202ENST00000394272 ABCC5O15440 1437 aa30.35■■■□□ 2.45
HDDC3-202ENST00000394272 RAB3GAP2Q9H2M9 1393 aa30.34■■■□□ 2.45
HDDC3-202ENST00000394272 ZNF777Q9ULD5 760 aaPredicted RBP30.34■■■□□ 2.45
HDDC3-202ENST00000394272 HFM1A2PYH4 1435 aa30.33■■■□□ 2.45
HDDC3-202ENST00000394272 SAMD9LQ8IVG5 1584 aa30.33■■■□□ 2.45
HDDC3-202ENST00000394272 ABCA9Q8IUA7 1624 aa30.32■■■□□ 2.44
HDDC3-202ENST00000394272 PLCH2O75038 1416 aa30.32■■■□□ 2.44
HDDC3-202ENST00000394272 ARHGAP5Q13017 1502 aa30.31■■■□□ 2.44
HDDC3-202ENST00000394272 AKNAQ7Z591 1439 aa30.3■■■□□ 2.44
HDDC3-202ENST00000394272 CROCC2H7BZ55 1655 aa30.3■■■□□ 2.44
HDDC3-202ENST00000394272 ARAP3Q8WWN8 1544 aa30.28■■■□□ 2.44
HDDC3-202ENST00000394272 NAIPQ13075 1403 aa30.28■■■□□ 2.44
HDDC3-202ENST00000394272 MAPKBP1O60336 1514 aa30.26■■■□□ 2.43
HDDC3-202ENST00000394272 ARHGEF5Q12774 1597 aa30.25■■■□□ 2.43
HDDC3-202ENST00000394272 GCC2Q8IWJ2 1684 aa30.25■■■□□ 2.43
HDDC3-202ENST00000394272 ROCK1Q13464 1354 aa30.24■■■□□ 2.43
HDDC3-202ENST00000394272 MBD5Q9P267 1494 aa30.24■■■□□ 2.43
HDDC3-202ENST00000394272 ZEB1P37275 1124 aaPredicted RBP30.23■■■□□ 2.43
HDDC3-202ENST00000394272 CHIC2Q9UKJ5 165 aa30.23■■■□□ 2.43
HDDC3-202ENST00000394272 DHX57Q6P158 1386 aaKnown RBP30.21■■■□□ 2.43
HDDC3-202ENST00000394272 ADGBQ8N7X0 1667 aa30.2■■■□□ 2.43
HDDC3-202ENST00000394272 SHANK2Q9UPX8 1470 aa30.2■■■□□ 2.42
HDDC3-202ENST00000394272 PLEKHH2Q8IVE3 1493 aa30.19■■■□□ 2.42
HDDC3-202ENST00000394272 KIAA1107Q9UPP5 1409 aa30.18■■■□□ 2.42
HDDC3-202ENST00000394272 ADGRL2O95490 1459 aa30.17■■■□□ 2.42
HDDC3-202ENST00000394272 EFCAB2Q5VUJ9 269 aa30.17■■■□□ 2.42
HDDC3-202ENST00000394272 SYCP2Q9BX26 1530 aa30.17■■■□□ 2.42
HDDC3-202ENST00000394272 RRP7BPQ9NSQ0 103 aa30.16■■■□□ 2.42
HDDC3-202ENST00000394272 HNRNPMP52272 730 aaKnown RBP eCLIP30.15■■■□□ 2.42
HDDC3-202ENST00000394272 CCDC141Q6ZP82 1450 aa30.15■■■□□ 2.42
HDDC3-202ENST00000394272 ABCC1P33527 1531 aa30.13■■■□□ 2.41
HDDC3-202ENST00000394272 RSPH4AQ5TD94 716 aa30.13■■■□□ 2.41
HDDC3-202ENST00000394272 NCOA1Q15788 1441 aa30.12■■■□□ 2.41
HDDC3-202ENST00000394272 C9orf84Q5VXU9 1444 aa30.11■■■□□ 2.41
HDDC3-202ENST00000394272 ARHGEF12Q9NZN5 1544 aa30.11■■■□□ 2.41
HDDC3-202ENST00000394272 FANCAO15360 1455 aa30.09■■■□□ 2.41
HDDC3-202ENST00000394272 KDM6BO15054 1643 aa30.08■■■□□ 2.41
HDDC3-202ENST00000394272 MAST1Q9Y2H9 1570 aa30.06■■■□□ 2.4
HDDC3-202ENST00000394272 CLSPNQ9HAW4 1339 aa30.06■■■□□ 2.4
HDDC3-202ENST00000394272 ANKRD30AQ9BXX3 1397 aa30.06■■■□□ 2.4
HDDC3-202ENST00000394272 TSPY4P0CV99 314 aa30.06■■■□□ 2.4
HDDC3-202ENST00000394272 TSPY10P0CW01 314 aa30.06■■■□□ 2.4
HDDC3-202ENST00000394272 CD109Q6YHK3 1445 aa30.04■■■□□ 2.4
HDDC3-202ENST00000394272 GLI2P10070 1586 aa30.03■■■□□ 2.4
HDDC3-202ENST00000394272 MAP3K4Q9Y6R4 1608 aa29.99■■■□□ 2.39
HDDC3-202ENST00000394272 TRAPPC8Q9Y2L5 1435 aa29.98■■■□□ 2.39
HDDC3-202ENST00000394272 CFAP74Q9C0B2 1584 aa29.98■■■□□ 2.39
HDDC3-202ENST00000394272 DIP2BQ9P265 1576 aa29.97■■■□□ 2.39
HDDC3-202ENST00000394272 ADGRL1O94910 1474 aa29.95■■■□□ 2.39
HDDC3-202ENST00000394272 PLXNC1O60486 1568 aa29.93■■■□□ 2.38
HDDC3-202ENST00000394272 ACIN1Q9UKV3 1341 aaKnown RBP29.93■■■□□ 2.38
HDDC3-202ENST00000394272 KIF15Q9NS87 1388 aa29.92■■■□□ 2.38
HDDC3-202ENST00000394272 ANKRD50Q9ULJ7 1429 aa29.92■■■□□ 2.38
HDDC3-202ENST00000394272 SCAPERQ9BY12 1400 aa29.9■■■□□ 2.38
HDDC3-202ENST00000394272 NEO1Q92859 1461 aa29.88■■■□□ 2.37
HDDC3-202ENST00000394272 RTEL1-TNFRSF6BF6WH68 1400 aa29.86■■■□□ 2.37
HDDC3-202ENST00000394272 AFAP1Q8N556 730 aa29.85■■■□□ 2.37
HDDC3-202ENST00000394272 ZFYVE16Q7Z3T8 1539 aa29.85■■■□□ 2.37
HDDC3-202ENST00000394272 FAM69CQ0P6D2 419 aa29.83■■■□□ 2.37
HDDC3-202ENST00000394272 INO80Q9ULG1 1556 aaPredicted RBP29.82■■■□□ 2.37
HDDC3-202ENST00000394272 TRIM52Q96A61 297 aa29.82■■■□□ 2.36
HDDC3-202ENST00000394272 DENND4BO75064 1496 aaPredicted RBP29.81■■■□□ 2.36
HDDC3-202ENST00000394272 SPAG9O60271 1321 aaKnown RBP29.81■■■□□ 2.36
HDDC3-202ENST00000394272 KIF13AQ9H1H9 1805 aa29.8■■■□□ 2.36
HDDC3-202ENST00000394272 DUOX2Q9NRD8 1548 aa29.79■■■□□ 2.36
HDDC3-202ENST00000394272 ZNF518AQ6AHZ1 1483 aa29.79■■■□□ 2.36
HDDC3-202ENST00000394272 ATP7AQ04656 1500 aa29.78■■■□□ 2.36
HDDC3-202ENST00000394272 POGZQ7Z3K3 1410 aa29.77■■■□□ 2.36
HDDC3-202ENST00000394272 KDM5CP41229 1560 aa29.76■■■□□ 2.36
HDDC3-202ENST00000394272 PPRC1Q5VV67 1664 aaKnown RBP29.76■■■□□ 2.36
HDDC3-202ENST00000394272 MPHOSPH9Q99550 1183 aa29.75■■■□□ 2.35
HDDC3-202ENST00000394272 PZPP20742 1482 aa29.74■■■□□ 2.35
HDDC3-202ENST00000394272 KDM5DQ9BY66 1539 aa29.73■■■□□ 2.35
HDDC3-202ENST00000394272 ERBINQ96RT1 1412 aa29.73■■■□□ 2.35
HDDC3-202ENST00000394272 TSPOAP1O95153 1857 aa29.72■■■□□ 2.35
HDDC3-202ENST00000394272 KIDINS220Q9ULH0 1771 aa29.72■■■□□ 2.35
HDDC3-202ENST00000394272 DNAJC5Q9H3Z4 198 aa29.7■■■□□ 2.34
HDDC3-202ENST00000394272 UNC13BO14795 1591 aa29.68■■■□□ 2.34
HDDC3-202ENST00000394272 RICTORQ6R327 1708 aa29.67■■■□□ 2.34
HDDC3-202ENST00000394272 TEX14Q8IWB6 1497 aa29.67■■■□□ 2.34
HDDC3-202ENST00000394272 MLH3Q9UHC1 1453 aa29.67■■■□□ 2.34
HDDC3-202ENST00000394272 HECW2Q9P2P5 1572 aa29.65■■■□□ 2.34
HDDC3-202ENST00000394272 SIN3AQ96ST3 1273 aa29.65■■■□□ 2.34
HDDC3-202ENST00000394272 SLC4A1APQ9BWU0 796 aaKnown RBP29.65■■■□□ 2.34
HDDC3-202ENST00000394272 NUP155O75694 1391 aa29.64■■■□□ 2.33
HDDC3-202ENST00000394272 MAGI2Q86UL8 1455 aa29.61■■■□□ 2.33
HDDC3-202ENST00000394272 RAPGEF3O95398 923 aa29.59■■■□□ 2.33
HDDC3-202ENST00000394272 FRMPD1Q5SYB0 1578 aa29.58■■■□□ 2.33
HDDC3-202ENST00000394272 FAM135AQ9P2D6 1515 aa29.57■■■□□ 2.32
HDDC3-202ENST00000394272 EIF2AK4Q9P2K8 1649 aaKnown RBP29.57■■■□□ 2.32
HDDC3-202ENST00000394272 MYT1LQ9UL68 1186 aa29.57■■■□□ 2.32
HDDC3-202ENST00000394272 DHX29Q7Z478 1369 aaKnown RBP29.57■■■□□ 2.32
HDDC3-202ENST00000394272 ANKRD30BQ9BXX2 1392 aa29.56■■■□□ 2.32
HDDC3-202ENST00000394272 IQGAP3Q86VI3 1631 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms