RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DAPK1P53355 1430 aa26.92■■□□□ 1.9
CCDC88C-203ENST00000389856 TTC37Q6PGP7 1564 aa26.91■■□□□ 1.9
CCDC88C-203ENST00000389856 CLSPNQ9HAW4 1339 aa26.9■■□□□ 1.9
CCDC88C-203ENST00000389856 ACIN1Q9UKV3 1341 aaKnown RBP26.89■■□□□ 1.9
CCDC88C-203ENST00000389856 PTPRKQ15262 1439 aa26.89■■□□□ 1.89
CCDC88C-203ENST00000389856 CDC42BPBQ9Y5S2 1711 aa26.89■■□□□ 1.89
CCDC88C-203ENST00000389856 GCC2Q8IWJ2 1684 aa26.88■■□□□ 1.89
CCDC88C-203ENST00000389856 ROCK1Q13464 1354 aa26.88■■□□□ 1.89
CCDC88C-203ENST00000389856 ZNF777Q9ULD5 760 aaPredicted RBP26.87■■□□□ 1.89
CCDC88C-203ENST00000389856 RIMBP3CA6NJZ7 1639 aa26.87■■□□□ 1.89
CCDC88C-203ENST00000389856 RIMBP3BA6NNM3 1639 aa26.87■■□□□ 1.89
CCDC88C-203ENST00000389856 RIMBP3Q9UFD9 1639 aa26.87■■□□□ 1.89
CCDC88C-203ENST00000389856 KCNH8Q96L42 1107 aa26.87■■□□□ 1.89
CCDC88C-203ENST00000389856 ARHGAP5Q13017 1502 aa26.86■■□□□ 1.89
CCDC88C-203ENST00000389856 PLEKHH2Q8IVE3 1493 aa26.86■■□□□ 1.89
CCDC88C-203ENST00000389856 ABCC5O15440 1437 aa26.85■■□□□ 1.89
CCDC88C-203ENST00000389856 CROCC2H7BZ55 1655 aa26.85■■□□□ 1.89
CCDC88C-203ENST00000389856 ARAP3Q8WWN8 1544 aa26.84■■□□□ 1.89
CCDC88C-203ENST00000389856 ADGBQ8N7X0 1667 aa26.84■■□□□ 1.89
CCDC88C-203ENST00000389856 ASXL2Q76L83 1435 aa26.84■■□□□ 1.89
CCDC88C-203ENST00000389856 ARHGEF5Q12774 1597 aa26.84■■□□□ 1.89
CCDC88C-203ENST00000389856 ZNF644Q9H582 1327 aaPredicted RBP26.83■■□□□ 1.89
CCDC88C-203ENST00000389856 RSPH4AQ5TD94 716 aa26.83■■□□□ 1.88
CCDC88C-203ENST00000389856 DHX57Q6P158 1386 aaKnown RBP26.82■■□□□ 1.88
CCDC88C-203ENST00000389856 NAIPQ13075 1403 aa26.82■■□□□ 1.88
CCDC88C-203ENST00000389856 SHANK2Q9UPX8 1470 aa26.82■■□□□ 1.88
CCDC88C-203ENST00000389856 PLCH2O75038 1416 aa26.81■■□□□ 1.88
CCDC88C-203ENST00000389856 ABCA9Q8IUA7 1624 aa26.8■■□□□ 1.88
CCDC88C-203ENST00000389856 SAMD9LQ8IVG5 1584 aa26.79■■□□□ 1.88
CCDC88C-203ENST00000389856 EFCAB2Q5VUJ9 269 aa26.76■■□□□ 1.87
CCDC88C-203ENST00000389856 CHIC2Q9UKJ5 165 aa26.76■■□□□ 1.87
CCDC88C-203ENST00000389856 ADGRL2O95490 1459 aa26.76■■□□□ 1.87
CCDC88C-203ENST00000389856 KIAA1107Q9UPP5 1409 aa26.75■■□□□ 1.87
CCDC88C-203ENST00000389856 CCDC141Q6ZP82 1450 aa26.74■■□□□ 1.87
CCDC88C-203ENST00000389856 TSPY4P0CV99 314 aa26.73■■□□□ 1.87
CCDC88C-203ENST00000389856 TSPY10P0CW01 314 aa26.73■■□□□ 1.87
CCDC88C-203ENST00000389856 ANKRD30AQ9BXX3 1397 aa26.73■■□□□ 1.87
CCDC88C-203ENST00000389856 RRP7BPQ9NSQ0 103 aa26.72■■□□□ 1.87
CCDC88C-203ENST00000389856 MAPKBP1O60336 1514 aa26.71■■□□□ 1.87
CCDC88C-203ENST00000389856 MBD5Q9P267 1494 aa26.7■■□□□ 1.86
CCDC88C-203ENST00000389856 CYB5RLQ6IPT4 315 aa26.69■■□□□ 1.86
CCDC88C-203ENST00000389856 C9orf84Q5VXU9 1444 aa26.69■■□□□ 1.86
CCDC88C-203ENST00000389856 SYCP2Q9BX26 1530 aa26.68■■□□□ 1.86
CCDC88C-203ENST00000389856 NCOA1Q15788 1441 aa26.66■■□□□ 1.86
CCDC88C-203ENST00000389856 MAST1Q9Y2H9 1570 aa26.65■■□□□ 1.86
CCDC88C-203ENST00000389856 ABCC1P33527 1531 aa26.65■■□□□ 1.86
CCDC88C-203ENST00000389856 CFAP74Q9C0B2 1584 aa26.64■■□□□ 1.85
CCDC88C-203ENST00000389856 HNRNPMP52272 730 aaKnown RBP eCLIP26.64■■□□□ 1.85
CCDC88C-203ENST00000389856 FANCAO15360 1455 aa26.61■■□□□ 1.85
CCDC88C-203ENST00000389856 CD109Q6YHK3 1445 aa26.55■■□□□ 1.84
CCDC88C-203ENST00000389856 PLXNC1O60486 1568 aa26.55■■□□□ 1.84
CCDC88C-203ENST00000389856 KDM6BO15054 1643 aa26.53■■□□□ 1.84
CCDC88C-203ENST00000389856 ANKRD50Q9ULJ7 1429 aa26.53■■□□□ 1.84
CCDC88C-203ENST00000389856 TRIM52Q96A61 297 aa26.53■■□□□ 1.84
CCDC88C-203ENST00000389856 GLI2P10070 1586 aa26.52■■□□□ 1.84
CCDC88C-203ENST00000389856 KIF15Q9NS87 1388 aa26.52■■□□□ 1.84
CCDC88C-203ENST00000389856 ADGRL1O94910 1474 aa26.51■■□□□ 1.83
CCDC88C-203ENST00000389856 ARHGEF12Q9NZN5 1544 aa26.51■■□□□ 1.83
CCDC88C-203ENST00000389856 RTEL1-TNFRSF6BF6WH68 1400 aa26.47■■□□□ 1.83
CCDC88C-203ENST00000389856 NEO1Q92859 1461 aa26.45■■□□□ 1.82
CCDC88C-203ENST00000389856 MAP3K4Q9Y6R4 1608 aa26.45■■□□□ 1.82
CCDC88C-203ENST00000389856 DUOX2Q9NRD8 1548 aa26.44■■□□□ 1.82
CCDC88C-203ENST00000389856 TRAPPC8Q9Y2L5 1435 aa26.44■■□□□ 1.82
CCDC88C-203ENST00000389856 SPAG9O60271 1321 aaKnown RBP26.43■■□□□ 1.82
CCDC88C-203ENST00000389856 SCAPERQ9BY12 1400 aa26.43■■□□□ 1.82
CCDC88C-203ENST00000389856 TIMELESSQ9UNS1 1208 aa26.43■■□□□ 1.82
CCDC88C-203ENST00000389856 DIP2BQ9P265 1576 aa26.4■■□□□ 1.82
CCDC88C-203ENST00000389856 ZNF518AQ6AHZ1 1483 aa26.4■■□□□ 1.82
CCDC88C-203ENST00000389856 MPHOSPH9Q99550 1183 aa26.39■■□□□ 1.82
CCDC88C-203ENST00000389856 ERBINQ96RT1 1412 aa26.39■■□□□ 1.82
CCDC88C-203ENST00000389856 ZFYVE16Q7Z3T8 1539 aa26.38■■□□□ 1.81
CCDC88C-203ENST00000389856 INO80Q9ULG1 1556 aaPredicted RBP26.37■■□□□ 1.81
CCDC88C-203ENST00000389856 KDM5DQ9BY66 1539 aa26.37■■□□□ 1.81
CCDC88C-203ENST00000389856 ATP7AQ04656 1500 aa26.36■■□□□ 1.81
CCDC88C-203ENST00000389856 SLC4A1APQ9BWU0 796 aaKnown RBP26.34■■□□□ 1.81
CCDC88C-203ENST00000389856 AFAP1Q8N556 730 aa26.32■■□□□ 1.8
CCDC88C-203ENST00000389856 UNC13BO14795 1591 aa26.32■■□□□ 1.8
CCDC88C-203ENST00000389856 POGZQ7Z3K3 1410 aa26.32■■□□□ 1.8
CCDC88C-203ENST00000389856 PZPP20742 1482 aa26.31■■□□□ 1.8
CCDC88C-203ENST00000389856 FAM69CQ0P6D2 419 aa26.31■■□□□ 1.8
CCDC88C-203ENST00000389856 TEX14Q8IWB6 1497 aa26.3■■□□□ 1.8
CCDC88C-203ENST00000389856 NUP155O75694 1391 aa26.3■■□□□ 1.8
CCDC88C-203ENST00000389856 KDM5CP41229 1560 aa26.29■■□□□ 1.8
CCDC88C-203ENST00000389856 MYT1LQ9UL68 1186 aa26.28■■□□□ 1.8
CCDC88C-203ENST00000389856 DENND4BO75064 1496 aaPredicted RBP26.27■■□□□ 1.8
CCDC88C-203ENST00000389856 ZNF316A6NFI3 1004 aaPredicted RBP26.27■■□□□ 1.8
CCDC88C-203ENST00000389856 NEUROD1Q13562 356 aa26.27■■□□□ 1.8
CCDC88C-203ENST00000389856 TONSLQ96HA7 1378 aa26.25■■□□□ 1.79
CCDC88C-203ENST00000389856 SIN3AQ96ST3 1273 aa26.25■■□□□ 1.79
CCDC88C-203ENST00000389856 HECW2Q9P2P5 1572 aa26.25■■□□□ 1.79
CCDC88C-203ENST00000389856 MLH3Q9UHC1 1453 aa26.24■■□□□ 1.79
CCDC88C-203ENST00000389856 EIF2AK4Q9P2K8 1649 aaKnown RBP26.24■■□□□ 1.79
CCDC88C-203ENST00000389856 KIDINS220Q9ULH0 1771 aa26.22■■□□□ 1.79
CCDC88C-203ENST00000389856 MAGI2Q86UL8 1455 aa26.21■■□□□ 1.79
CCDC88C-203ENST00000389856 IQGAP3Q86VI3 1631 aa26.21■■□□□ 1.79
CCDC88C-203ENST00000389856 DIEXFQ68CQ4 756 aaKnown RBP26.21■■□□□ 1.79
CCDC88C-203ENST00000389856 FAM135AQ9P2D6 1515 aa26.2■■□□□ 1.78
CCDC88C-203ENST00000389856 ANKRD30BQ9BXX2 1392 aa26.2■■□□□ 1.78
CCDC88C-203ENST00000389856 DHX29Q7Z478 1369 aaKnown RBP26.18■■□□□ 1.78
CCDC88C-203ENST00000389856 KIF13AQ9H1H9 1805 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms