RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 MSNP26038 577 aaKnown RBP15.89■□□□□ 0.13
CHD3-203ENST00000380358 CARD11Q9BXL7 1154 aa15.89■□□□□ 0.13
CHD3-203ENST00000380358 GORABQ5T7V8 394 aa15.87■□□□□ 0.13
CHD3-203ENST00000380358 TAF7LQ5H9L4 462 aa15.87■□□□□ 0.13
CHD3-203ENST00000380358 RTF1Q92541 710 aaKnown RBP15.86■□□□□ 0.13
CHD3-203ENST00000380358 HSCBQ8IWL3 235 aa15.85■□□□□ 0.13
CHD3-203ENST00000380358 TOMM22Q9NS69 142 aa15.85■□□□□ 0.13
CHD3-203ENST00000380358 FRAT2O75474 233 aaPredicted RBP15.85■□□□□ 0.13
CHD3-203ENST00000380358 PES1O00541 588 aaKnown RBP15.84■□□□□ 0.13
CHD3-203ENST00000380358 SAMD1Q6SPF0 538 aaPredicted RBP15.84■□□□□ 0.13
CHD3-203ENST00000380358 MARCH6O60337 910 aa15.83■□□□□ 0.12
CHD3-203ENST00000380358 FOXD4L1Q9NU39 408 aa15.83■□□□□ 0.12
CHD3-203ENST00000380358 PHF23Q9BUL5 403 aaPredicted RBP15.82■□□□□ 0.12
CHD3-203ENST00000380358 MCCP23508 829 aa15.82■□□□□ 0.12
CHD3-203ENST00000380358 L1TD1Q5T7N2 865 aaKnown RBP15.82■□□□□ 0.12
CHD3-203ENST00000380358 FOXD4L5Q5VV16 416 aaPredicted RBP15.82■□□□□ 0.12
CHD3-203ENST00000380358 FOXD4L4Q8WXT5 416 aaPredicted RBP15.82■□□□□ 0.12
CHD3-203ENST00000380358 KIAA1211Q6ZU35 1233 aa15.81■□□□□ 0.12
CHD3-203ENST00000380358 PLEKHD1A6NEE1 506 aa15.79■□□□□ 0.12
CHD3-203ENST00000380358 CEP89Q96ST8 783 aa15.79■□□□□ 0.12
CHD3-203ENST00000380358 NUTM2FA1L443 756 aa15.79■□□□□ 0.12
CHD3-203ENST00000380358 GTF2E1P29083 439 aaPredicted RBP15.79■□□□□ 0.12
CHD3-203ENST00000380358 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.78■□□□□ 0.12
CHD3-203ENST00000380358 FBXW7Q969H0 707 aa15.77■□□□□ 0.12
CHD3-203ENST00000380358 LTV1Q96GA3 475 aaPredicted RBP15.77■□□□□ 0.12
CHD3-203ENST00000380358 TNNT3P45378 269 aaPredicted RBP15.77■□□□□ 0.11
CHD3-203ENST00000380358 TRIM6-TRIM34B2RNG4 842 aa15.75■□□□□ 0.11
CHD3-203ENST00000380358 NUTM2DQ5VT03 806 aaPredicted RBP15.73■□□□□ 0.11
CHD3-203ENST00000380358 FOXD4L6Q3SYB3 417 aaPredicted RBP15.72■□□□□ 0.11
CHD3-203ENST00000380358 CDCA8Q53HL2 280 aa15.72■□□□□ 0.11
CHD3-203ENST00000380358 SLC4A10Q6U841 1118 aa15.72■□□□□ 0.11
CHD3-203ENST00000380358 FOXD4L3Q6VB84 417 aaPredicted RBP15.72■□□□□ 0.11
CHD3-203ENST00000380358 SLKQ9H2G2 1235 aaPredicted RBP15.71■□□□□ 0.11
CHD3-203ENST00000380358 NOP58Q9Y2X3 529 aaKnown RBP15.71■□□□□ 0.11
CHD3-203ENST00000380358 GGT6Q6P531 493 aa15.7■□□□□ 0.1
CHD3-203ENST00000380358 MORC1Q86VD1 984 aa15.7■□□□□ 0.1
CHD3-203ENST00000380358 CWC22Q9HCG8 908 aaKnown RBP15.7■□□□□ 0.1
CHD3-203ENST00000380358 NGEFQ8N5V2 710 aa15.7■□□□□ 0.1
CHD3-203ENST00000380358 CFDP1Q9UEE9 299 aaPredicted RBP15.7■□□□□ 0.1
CHD3-203ENST00000380358 TCEAL9Q9UHQ7 104 aa15.69■□□□□ 0.1
CHD3-203ENST00000380358 ITPRIPQ8IWB1 547 aa15.68■□□□□ 0.1
CHD3-203ENST00000380358 CCAR2Q8N163 923 aaKnown RBP15.68■□□□□ 0.1
CHD3-203ENST00000380358 GOLGA6L1Q8N7Z2 621 aa15.67■□□□□ 0.1
CHD3-203ENST00000380358 BCL11BQ9C0K0 894 aaPredicted RBP15.67■□□□□ 0.1
CHD3-203ENST00000380358 CTDP1Q9Y5B0 961 aaPredicted RBP15.66■□□□□ 0.1
CHD3-203ENST00000380358 DCAF11Q8TEB1 546 aa15.66■□□□□ 0.1
CHD3-203ENST00000380358 AEBP2Q6ZN18 517 aaPredicted RBP15.64■□□□□ 0.09
CHD3-203ENST00000380358 TPD52L1Q16890 204 aaPredicted RBP15.64■□□□□ 0.09
CHD3-203ENST00000380358 SIN3AQ96ST3 1273 aa15.63■□□□□ 0.09
CHD3-203ENST00000380358 TPM4P67936 248 aa15.63■□□□□ 0.09
CHD3-203ENST00000380358 MEX3CQ5U5Q3 659 aaKnown RBP15.63■□□□□ 0.09
CHD3-203ENST00000380358 MFAP1P55081 439 aaKnown RBP15.63■□□□□ 0.09
CHD3-203ENST00000380358 CHMP4BQ9H444 224 aaKnown RBP15.62■□□□□ 0.09
CHD3-203ENST00000380358 TRIM34Q9BYJ4 488 aa15.61■□□□□ 0.09
CHD3-203ENST00000380358 SYTL4Q96C24 671 aaPredicted RBP15.61■□□□□ 0.09
CHD3-203ENST00000380358 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.61■□□□□ 0.093e-7■■■■■ 116.6
CHD3-203ENST00000380358 U2AF1L5P0DN76 240 aaPredicted RBP15.58■□□□□ 0.08
CHD3-203ENST00000380358 MS4A1P11836 297 aa15.58■□□□□ 0.08
CHD3-203ENST00000380358 U2AF1Q01081 240 aaKnown RBP eCLIP15.58■□□□□ 0.08
CHD3-203ENST00000380358 SF3A1Q15459 793 aaKnown RBP15.58■□□□□ 0.08
CHD3-203ENST00000380358 TPM3P06753 285 aa15.58■□□□□ 0.08
CHD3-203ENST00000380358 DHX16O60231 1041 aaKnown RBP15.57■□□□□ 0.08
CHD3-203ENST00000380358 PPP1R1BQ9UD71 204 aaPredicted RBP15.57■□□□□ 0.08
CHD3-203ENST00000380358 PCMTD1Q96MG8 357 aaPredicted RBP15.57■□□□□ 0.08
CHD3-203ENST00000380358 EVA1CP58658 441 aa15.57■□□□□ 0.08
CHD3-203ENST00000380358 VSIG10Q8N0Z9 540 aa15.56■□□□□ 0.08
CHD3-203ENST00000380358 KDM4AO75164 1064 aa15.56■□□□□ 0.08
CHD3-203ENST00000380358 MTMR7Q9Y216 660 aa15.56■□□□□ 0.08
CHD3-203ENST00000380358 CLUAP1Q96AJ1 413 aa15.55■□□□□ 0.08
CHD3-203ENST00000380358 DEKP35659 375 aaKnown RBP15.55■□□□□ 0.08
CHD3-203ENST00000380358 FOSBP53539 338 aa15.55■□□□□ 0.08
CHD3-203ENST00000380358 SLC4A3P48751 1232 aa15.54■□□□□ 0.08
CHD3-203ENST00000380358 TMF1P82094 1093 aa15.54■□□□□ 0.08
CHD3-203ENST00000380358 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.54■□□□□ 0.08
CHD3-203ENST00000380358 HDGFL2Q7Z4V5 671 aaPredicted RBP15.54■□□□□ 0.08
CHD3-203ENST00000380358 GPATCH3Q96I76 525 aa15.54■□□□□ 0.08
CHD3-203ENST00000380358 PPP4R2Q9NY27 417 aa15.54■□□□□ 0.08
CHD3-203ENST00000380358 PTMSP20962 102 aa15.54■□□□□ 0.08
CHD3-203ENST00000380358 CCDC146Q8IYE0 955 aa15.53■□□□□ 0.08
CHD3-203ENST00000380358 HDGFP51858 240 aaKnown RBP15.53■□□□□ 0.08
CHD3-203ENST00000380358 FOXD1Q16676 465 aa15.52■□□□□ 0.08
CHD3-203ENST00000380358 NECTIN2Q92692 538 aa15.52■□□□□ 0.08
CHD3-203ENST00000380358 STK31Q9BXU1 1019 aa15.52■□□□□ 0.07
CHD3-203ENST00000380358 NGDNQ8NEJ9 315 aaKnown RBP15.52■□□□□ 0.07
CHD3-203ENST00000380358 ZCCHC6Q5VYS8 1495 aaKnown RBP15.51■□□□□ 0.07
CHD3-203ENST00000380358 HTATSF1O43719 755 aaKnown RBP15.51■□□□□ 0.07
CHD3-203ENST00000380358 RILPL2Q969X0 211 aa15.51■□□□□ 0.07
CHD3-203ENST00000380358 MCTP1Q6DN14 999 aa15.51■□□□□ 0.07
CHD3-203ENST00000380358 PAF1Q8N7H5 531 aa15.51■□□□□ 0.07
CHD3-203ENST00000380358 SCRIBQ14160 1630 aa15.5■□□□□ 0.07
CHD3-203ENST00000380358 H3BQV1 296 aa15.5■□□□□ 0.07
CHD3-203ENST00000380358 IBSPP21815 317 aaPredicted RBP15.5■□□□□ 0.07
CHD3-203ENST00000380358 IFFO2Q5TF58 517 aa15.5■□□□□ 0.07
CHD3-203ENST00000380358 FYB1O15117 783 aa15.5■□□□□ 0.07
CHD3-203ENST00000380358 ZNF592Q92610 1267 aa15.49■□□□□ 0.07
CHD3-203ENST00000380358 AMPHP49418 695 aa15.49■□□□□ 0.07
CHD3-203ENST00000380358 GBP4Q96PP9 640 aa15.49■□□□□ 0.07
CHD3-203ENST00000380358 SKIDA1Q1XH10 827 aa15.48■□□□□ 0.07
CHD3-203ENST00000380358 AKAP17AQ02040 695 aaKnown RBP15.48■□□□□ 0.07
CHD3-203ENST00000380358 ELL2O00472 640 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms