RNA–Protein interactions for RNA: ENST00000379446.9

NEDD9-202, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NEDD9, Length 4,536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-202ENST00000379446 RAD54L2Q9Y4B4 1467 aa8.83□□□□□ -1
NEDD9-202ENST00000379446 CEBPAP49715 358 aaPredicted RBP8.82□□□□□ -1
NEDD9-202ENST00000379446 NCAPD3P42695 1498 aa8.81□□□□□ -1
NEDD9-202ENST00000379446 GAPVD1Q14C86 1478 aa8.81□□□□□ -1
NEDD9-202ENST00000379446 PSME1Q06323 249 aa8.81□□□□□ -1
NEDD9-202ENST00000379446 LTV1Q96GA3 475 aaPredicted RBP8.81□□□□□ -1
NEDD9-202ENST00000379446 SYNJ1O43426 1573 aa8.81□□□□□ -1
NEDD9-202ENST00000379446 GTF2E1P29083 439 aaPredicted RBP8.81□□□□□ -1
NEDD9-202ENST00000379446 NGLY1Q96IV0 654 aa8.81□□□□□ -1
NEDD9-202ENST00000379446 TSHZ2Q9NRE2 1034 aa8.81□□□□□ -1
NEDD9-202ENST00000379446 TNNT2P45379 298 aaPredicted RBP8.81□□□□□ -1
NEDD9-202ENST00000379446 TONSLQ96HA7 1378 aa8.8□□□□□ -1
NEDD9-202ENST00000379446 ADAMTS2O95450 1211 aa8.8□□□□□ -1
NEDD9-202ENST00000379446 G3V3G9 751 aa8.8□□□□□ -1
NEDD9-202ENST00000379446 DCAF8Q5TAQ9 597 aa8.8□□□□□ -1
NEDD9-202ENST00000379446 SIN3AQ96ST3 1273 aa8.79□□□□□ -1
NEDD9-202ENST00000379446 AFAP1Q8N556 730 aa8.78□□□□□ -1
NEDD9-202ENST00000379446 DISP3Q9P2K9 1392 aa8.78□□□□□ -1
NEDD9-202ENST00000379446 DHX57Q6P158 1386 aaKnown RBP8.77□□□□□ -1.01
NEDD9-202ENST00000379446 PPP6R1Q9UPN7 881 aa8.77□□□□□ -1.01
NEDD9-202ENST00000379446 STRN4Q9NRL3 753 aa8.76□□□□□ -1.01
NEDD9-202ENST00000379446 NBR1Q14596 966 aa8.76□□□□□ -1.01
NEDD9-202ENST00000379446 IFT140Q96RY7 1462 aa8.76□□□□□ -1.01
NEDD9-202ENST00000379446 PRKCSHP14314 528 aaPredicted RBP8.76□□□□□ -1.01
NEDD9-202ENST00000379446 KIF21BO75037 1637 aa8.75□□□□□ -1.01
NEDD9-202ENST00000379446 SLC26A8Q96RN1 970 aa8.75□□□□□ -1.01
NEDD9-202ENST00000379446 SALL2Q9Y467 1007 aaPredicted RBP8.75□□□□□ -1.01
NEDD9-202ENST00000379446 GRIN2BQ13224 1484 aa8.75□□□□□ -1.01
NEDD9-202ENST00000379446 ANP32CO43423 234 aa8.74□□□□□ -1.01
NEDD9-202ENST00000379446 PDE3BQ13370 1112 aa8.74□□□□□ -1.01
NEDD9-202ENST00000379446 EIF4G2P78344 907 aaKnown RBP eCLIP8.74□□□□□ -1.01
NEDD9-202ENST00000379446 GOLGA2Q08379 1002 aa8.74□□□□□ -1.01
NEDD9-202ENST00000379446 CFAP44Q96MT7 982 aa8.74□□□□□ -1.01
NEDD9-202ENST00000379446 ESCO1Q5FWF5 840 aa8.73□□□□□ -1.01
NEDD9-202ENST00000379446 IRX6P78412 446 aaPredicted RBP8.73□□□□□ -1.01
NEDD9-202ENST00000379446 DCAF11Q8TEB1 546 aa8.73□□□□□ -1.01
NEDD9-202ENST00000379446 RTN4Q9NQC3 1192 aaKnown RBP8.73□□□□□ -1.01
NEDD9-202ENST00000379446 RSPH4AQ5TD94 716 aa8.72□□□□□ -1.01
NEDD9-202ENST00000379446 AMPHP49418 695 aa8.71□□□□□ -1.01
NEDD9-202ENST00000379446 HDGFL2Q7Z4V5 671 aaPredicted RBP8.71□□□□□ -1.01
NEDD9-202ENST00000379446 RBM33Q96EV2 1170 aaKnown RBP8.71□□□□□ -1.01
NEDD9-202ENST00000379446 FGD5Q6ZNL6 1462 aa8.71□□□□□ -1.02
NEDD9-202ENST00000379446 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.71□□□□□ -1.02
NEDD9-202ENST00000379446 RAB3GAP2Q9H2M9 1393 aa8.71□□□□□ -1.02
NEDD9-202ENST00000379446 EIF5BO60841 1220 aaKnown RBP8.71□□□□□ -1.02
NEDD9-202ENST00000379446 BICRAQ9NZM4 1560 aa8.7□□□□□ -1.02
NEDD9-202ENST00000379446 U2SURPO15042 1029 aaKnown RBP8.7□□□□□ -1.02
NEDD9-202ENST00000379446 LAS1LQ9Y4W2 734 aaKnown RBP8.7□□□□□ -1.02
NEDD9-202ENST00000379446 FHAD1B1AJZ9 1412 aa8.7□□□□□ -1.02
NEDD9-202ENST00000379446 CFAP53Q96M91 514 aa8.7□□□□□ -1.02
NEDD9-202ENST00000379446 SNAPC4Q5SXM2 1469 aa8.7□□□□□ -1.02
NEDD9-202ENST00000379446 UNC13AQ9UPW8 1703 aa8.69□□□□□ -1.02
NEDD9-202ENST00000379446 LMTK3Q96Q04 1460 aa8.69□□□□□ -1.02
NEDD9-202ENST00000379446 CDCA8Q53HL2 280 aa8.69□□□□□ -1.02
NEDD9-202ENST00000379446 WDR43Q15061 677 aaKnown RBP eCLIP8.69□□□□□ -1.02
NEDD9-202ENST00000379446 CARD11Q9BXL7 1154 aa8.69□□□□□ -1.02
NEDD9-202ENST00000379446 ARAP1Q96P48 1450 aa8.69□□□□□ -1.02
NEDD9-202ENST00000379446 PAXIP1Q6ZW49 1069 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-202ENST00000379446 ISY1Q9ULR0 285 aaKnown RBP8.69□□□□□ -1.02
NEDD9-202ENST00000379446 NUP155O75694 1391 aa8.68□□□□□ -1.02
NEDD9-202ENST00000379446 PKD2Q13563 968 aa8.68□□□□□ -1.02
NEDD9-202ENST00000379446 NUTM2GQ5VZR2 741 aa8.68□□□□□ -1.02
NEDD9-202ENST00000379446 CCDC136Q96JN2 1154 aa8.68□□□□□ -1.02
NEDD9-202ENST00000379446 RBM19Q9Y4C8 960 aaKnown RBP8.68□□□□□ -1.02
NEDD9-202ENST00000379446 FHOD3Q2V2M9 1422 aa8.68□□□□□ -1.02
NEDD9-202ENST00000379446 TRAK1Q9UPV9 953 aa8.67□□□□□ -1.02
NEDD9-202ENST00000379446 VGFO15240 615 aaPredicted RBP8.67□□□□□ -1.02
NEDD9-202ENST00000379446 RTL5Q5HYW3 569 aaPredicted RBP8.67□□□□□ -1.02
NEDD9-202ENST00000379446 CD109Q6YHK3 1445 aa8.66□□□□□ -1.02
NEDD9-202ENST00000379446 XPCQ01831 940 aaPredicted RBP8.66□□□□□ -1.02
NEDD9-202ENST00000379446 C8orf37Q96NL8 207 aa8.66□□□□□ -1.02
NEDD9-202ENST00000379446 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.66□□□□□ -1.02
NEDD9-202ENST00000379446 PRDM11Q9NQV5 511 aa8.66□□□□□ -1.02
NEDD9-202ENST00000379446 NLRP2Q9NX02 1062 aa8.66□□□□□ -1.02
NEDD9-202ENST00000379446 KNSTRNQ9Y448 316 aa8.66□□□□□ -1.02
NEDD9-202ENST00000379446 NEUROD2Q15784 382 aa8.66□□□□□ -1.02
NEDD9-202ENST00000379446 FMN1Q68DA7 1419 aa8.65□□□□□ -1.02
NEDD9-202ENST00000379446 DAXXQ9UER7 740 aaPredicted RBP8.65□□□□□ -1.02
NEDD9-202ENST00000379446 SETD5Q9C0A6 1442 aa8.65□□□□□ -1.03
NEDD9-202ENST00000379446 ANKRD30AQ9BXX3 1397 aa8.65□□□□□ -1.03
NEDD9-202ENST00000379446 HNRNPUQ00839 825 aaKnown RBP eCLIP8.64□□□□□ -1.03
NEDD9-202ENST00000379446 BCL11BQ9C0K0 894 aaPredicted RBP8.64□□□□□ -1.03
NEDD9-202ENST00000379446 NUDCQ9Y266 331 aa8.64□□□□□ -1.03
NEDD9-202ENST00000379446 MINK1Q8N4C8 1332 aaPredicted RBP8.64□□□□□ -1.03
NEDD9-202ENST00000379446 RTF1Q92541 710 aaKnown RBP8.64□□□□□ -1.03
NEDD9-202ENST00000379446 PRXQ9BXM0 1461 aa8.64□□□□□ -1.03
NEDD9-202ENST00000379446 TULP1O00294 542 aaPredicted RBP8.64□□□□□ -1.03
NEDD9-202ENST00000379446 SCAPERQ9BY12 1400 aa8.63□□□□□ -1.03
NEDD9-202ENST00000379446 MAPK8IP3Q9UPT6 1336 aa8.63□□□□□ -1.03
NEDD9-202ENST00000379446 TOP2BQ02880 1626 aa8.62□□□□□ -1.03
NEDD9-202ENST00000379446 ANO8Q9HCE9 1232 aaPredicted RBP8.62□□□□□ -1.03
NEDD9-202ENST00000379446 ARHGAP35Q9NRY4 1499 aa8.62□□□□□ -1.03
NEDD9-202ENST00000379446 DEKP35659 375 aaKnown RBP8.62□□□□□ -1.03
NEDD9-202ENST00000379446 IGF1RP08069 1367 aa8.61□□□□□ -1.03
NEDD9-202ENST00000379446 CUX1P39880 1505 aa8.61□□□□□ -1.03
NEDD9-202ENST00000379446 TOM1L2Q6ZVM7 507 aa8.6□□□□□ -1.03
NEDD9-202ENST00000379446 GPRASP1Q5JY77 1395 aa8.6□□□□□ -1.03
NEDD9-202ENST00000379446 PHLDB1Q86UU1 1377 aa8.6□□□□□ -1.03
NEDD9-202ENST00000379446 PMFBP1Q8TBY8 1022 aa8.6□□□□□ -1.03
NEDD9-202ENST00000379446 CCDC18Q5T9S5 1454 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms