RNA–Protein interactions for RNA: ENST00000379446.9

NEDD9-202, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NEDD9, Length 4,536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-202ENST00000379446 DCAF8L2P0C7V8 631 aa12.76□□□□□ -0.37
NEDD9-202ENST00000379446 NISCHQ9Y2I1 1504 aa11.85□□□□□ -0.51
NEDD9-202ENST00000379446 SHROOM4Q9ULL8 1493 aa11.06□□□□□ -0.64
NEDD9-202ENST00000379446 FAM9AQ8IZU1 332 aaPredicted RBP11.03□□□□□ -0.64
NEDD9-202ENST00000379446 SUPT5HO00267 1087 aaKnown RBP11.01□□□□□ -0.65
NEDD9-202ENST00000379446 ABCC9O60706 1549 aa10.98□□□□□ -0.65
NEDD9-202ENST00000379446 PABPN1Q86U42 306 aaKnown RBP eCLIP10.91□□□□□ -0.66
NEDD9-202ENST00000379446 EHMT2Q96KQ7 1210 aa10.9□□□□□ -0.66
NEDD9-202ENST00000379446 TTBK1Q5TCY1 1321 aaPredicted RBP10.79□□□□□ -0.68
NEDD9-202ENST00000379446 RANGAP1P46060 587 aaPredicted RBP10.7□□□□□ -0.7
NEDD9-202ENST00000379446 MYT1LQ9UL68 1186 aa10.7□□□□□ -0.7
NEDD9-202ENST00000379446 ATP1B4Q9UN42 357 aaPredicted RBP10.68□□□□□ -0.7
NEDD9-202ENST00000379446 FBLN2P98095 1184 aa10.61□□□□□ -0.71
NEDD9-202ENST00000379446 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.56□□□□□ -0.72
NEDD9-202ENST00000379446 HNRNPUL2Q1KMD3 747 aaKnown RBP10.56□□□□□ -0.72
NEDD9-202ENST00000379446 APLP2Q06481 763 aa10.5□□□□□ -0.73
NEDD9-202ENST00000379446 CHIC1Q5VXU3 224 aa10.47□□□□□ -0.73
NEDD9-202ENST00000379446 PLPPR3Q6T4P5 718 aa10.37□□□□□ -0.75
NEDD9-202ENST00000379446 TRHP20396 242 aaPredicted RBP10.36□□□□□ -0.75
NEDD9-202ENST00000379446 TRIM41Q8WV44 630 aa10.33□□□□□ -0.76
NEDD9-202ENST00000379446 NPM1P06748 294 aaKnown RBP eCLIP10.25□□□□□ -0.77
NEDD9-202ENST00000379446 UBTFP17480 764 aaKnown RBP10.25□□□□□ -0.77
NEDD9-202ENST00000379446 AEBP2Q6ZN18 517 aaPredicted RBP10.25□□□□□ -0.77
NEDD9-202ENST00000379446 PCGF6Q9BYE7 350 aa10.16□□□□□ -0.78
NEDD9-202ENST00000379446 ESF1Q9H501 851 aaKnown RBP10.15□□□□□ -0.79
NEDD9-202ENST00000379446 PPARGC1BQ86YN6 1023 aaKnown RBP10.13□□□□□ -0.79
NEDD9-202ENST00000379446 BCANQ96GW7 911 aa10.08□□□□□ -0.8
NEDD9-202ENST00000379446 ARID3CA6NKF2 412 aa10.05□□□□□ -0.8
NEDD9-202ENST00000379446 ERCC6Q03468 1493 aa10.04□□□□□ -0.8
NEDD9-202ENST00000379446 HRCP23327 699 aa10.03□□□□□ -0.8
NEDD9-202ENST00000379446 LOC105371045A0A1W2PR82 267 aa9.99□□□□□ -0.81
NEDD9-202ENST00000379446 CHMP7Q8WUX9 453 aaPredicted RBP9.98□□□□□ -0.81
NEDD9-202ENST00000379446 ZCCHC6Q5VYS8 1495 aaKnown RBP9.97□□□□□ -0.81
NEDD9-202ENST00000379446 PELP1Q8IZL8 1130 aaKnown RBP9.97□□□□□ -0.81
NEDD9-202ENST00000379446 ARID4BQ4LE39 1312 aaPredicted RBP9.93□□□□□ -0.82
NEDD9-202ENST00000379446 MYO15BQ96JP2 1530 aa9.92□□□□□ -0.82
NEDD9-202ENST00000379446 SCRIBQ14160 1630 aa9.9□□□□□ -0.83
NEDD9-202ENST00000379446 ITGAEP38570 1179 aa9.89□□□□□ -0.83
NEDD9-202ENST00000379446 SENP3Q9H4L4 574 aaPredicted RBP9.89□□□□□ -0.83
NEDD9-202ENST00000379446 SCAF1Q9H7N4 1312 aaKnown RBP9.88□□□□□ -0.83
NEDD9-202ENST00000379446 SLC4A1APQ9BWU0 796 aaKnown RBP9.88□□□□□ -0.83
NEDD9-202ENST00000379446 STAG3Q9UJ98 1225 aa9.85□□□□□ -0.83
NEDD9-202ENST00000379446 P3H3Q8IVL6 736 aa9.84□□□□□ -0.83
NEDD9-202ENST00000379446 ZNF777Q9ULD5 760 aaPredicted RBP9.8□□□□□ -0.84
NEDD9-202ENST00000379446 KCNH8Q96L42 1107 aa9.79□□□□□ -0.84
NEDD9-202ENST00000379446 RB1CC1Q8TDY2 1594 aa9.79□□□□□ -0.84
NEDD9-202ENST00000379446 CYB5RLQ6IPT4 315 aa9.78□□□□□ -0.84
NEDD9-202ENST00000379446 CCDC180Q9P1Z9 1646 aa9.78□□□□□ -0.84
NEDD9-202ENST00000379446 TRIM26Q12899 539 aaPredicted RBP9.76□□□□□ -0.85
NEDD9-202ENST00000379446 POLR3GLQ9BT43 218 aa9.74□□□□□ -0.85
NEDD9-202ENST00000379446 C14orf37Q86TY3 774 aa9.73□□□□□ -0.85
NEDD9-202ENST00000379446 CHGAP10645 457 aaKnown RBP9.72□□□□□ -0.85
NEDD9-202ENST00000379446 A0A0G2JS52 829 aa9.72□□□□□ -0.85
NEDD9-202ENST00000379446 PLEKHG5O94827 1062 aa9.72□□□□□ -0.85
NEDD9-202ENST00000379446 MLECQ14165 292 aa9.68□□□□□ -0.86
NEDD9-202ENST00000379446 CDK11AQ9UQ88 783 aaPredicted RBP9.68□□□□□ -0.86
NEDD9-202ENST00000379446 CECR2Q9BXF3 1484 aa9.66□□□□□ -0.86
NEDD9-202ENST00000379446 OSCARQ8IYS5 282 aa9.66□□□□□ -0.86
NEDD9-202ENST00000379446 CNGB1Q14028 1251 aaPredicted RBP9.63□□□□□ -0.87
NEDD9-202ENST00000379446 FAM50AQ14320 339 aaKnown RBP9.63□□□□□ -0.87
NEDD9-202ENST00000379446 SLC24A1O60721 1099 aa9.62□□□□□ -0.87
NEDD9-202ENST00000379446 HAP1P54257 671 aaPredicted RBP9.62□□□□□ -0.87
NEDD9-202ENST00000379446 MYT1Q01538 1121 aa9.62□□□□□ -0.87
NEDD9-202ENST00000379446 TRIM52Q96A61 297 aa9.62□□□□□ -0.87
NEDD9-202ENST00000379446 ZEB1P37275 1124 aaPredicted RBP9.61□□□□□ -0.87
NEDD9-202ENST00000379446 DCAF1Q9Y4B6 1507 aa9.6□□□□□ -0.87
NEDD9-202ENST00000379446 YTHDC1Q96MU7 727 aaKnown RBP9.59□□□□□ -0.87
NEDD9-202ENST00000379446 DNAJC5BQ9UF47 199 aa9.58□□□□□ -0.88
NEDD9-202ENST00000379446 CCER1Q8TC90 406 aaPredicted RBP9.57□□□□□ -0.88
NEDD9-202ENST00000379446 PPP1R15AO75807 674 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-202ENST00000379446 PHF23Q9BUL5 403 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-202ENST00000379446 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.54□□□□□ -0.889e-10■□□□□ 9.9
NEDD9-202ENST00000379446 ZNF326Q5BKZ1 582 aaKnown RBP9.52□□□□□ -0.88
NEDD9-202ENST00000379446 GTF3C3Q9Y5Q9 886 aa9.52□□□□□ -0.89
NEDD9-202ENST00000379446 CENPBP07199 599 aaPredicted RBP9.51□□□□□ -0.89
NEDD9-202ENST00000379446 RSF1Q96T23 1441 aaPredicted RBP9.51□□□□□ -0.89
NEDD9-202ENST00000379446 BAZ1BQ9UIG0 1483 aaKnown RBP9.48□□□□□ -0.89
NEDD9-202ENST00000379446 ZBTB7CA1YPR0 619 aa9.48□□□□□ -0.89
NEDD9-202ENST00000379446 PLEKHD1A6NEE1 506 aa9.48□□□□□ -0.89
NEDD9-202ENST00000379446 NACADO15069 1562 aa9.48□□□□□ -0.89
NEDD9-202ENST00000379446 LMOD2Q6P5Q4 547 aa9.47□□□□□ -0.89
NEDD9-202ENST00000379446 PDS5BQ9NTI5 1447 aa9.47□□□□□ -0.89
NEDD9-202ENST00000379446 TSPY4P0CV99 314 aa9.43□□□□□ -0.9
NEDD9-202ENST00000379446 TSPY10P0CW01 314 aa9.43□□□□□ -0.9
NEDD9-202ENST00000379446 NEUROD1Q13562 356 aa9.42□□□□□ -0.9
NEDD9-202ENST00000379446 FAM69CQ0P6D2 419 aa9.4□□□□□ -0.9
NEDD9-202ENST00000379446 ACIN1Q9UKV3 1341 aaKnown RBP9.39□□□□□ -0.91
NEDD9-202ENST00000379446 CCDC9Q9Y3X0 531 aaKnown RBP9.35□□□□□ -0.91
NEDD9-202ENST00000379446 NPM2Q86SE8 214 aaKnown RBP9.35□□□□□ -0.91
NEDD9-202ENST00000379446 CSRNP3Q8WYN3 585 aa9.34□□□□□ -0.91
NEDD9-202ENST00000379446 GGT6Q6P531 493 aa9.32□□□□□ -0.92
NEDD9-202ENST00000379446 TDRD9Q8NDG6 1382 aaKnown RBP9.32□□□□□ -0.92
NEDD9-202ENST00000379446 DIEXFQ68CQ4 756 aaKnown RBP9.31□□□□□ -0.92
NEDD9-202ENST00000379446 DCAF8L1A6NGE4 600 aa9.31□□□□□ -0.92
NEDD9-202ENST00000379446 CHIC2Q9UKJ5 165 aa9.31□□□□□ -0.92
NEDD9-202ENST00000379446 MEX3CQ5U5Q3 659 aaKnown RBP9.3□□□□□ -0.92
NEDD9-202ENST00000379446 MROH2BQ7Z745 1585 aa9.28□□□□□ -0.92
NEDD9-202ENST00000379446 SMARCA2P51531 1590 aa9.28□□□□□ -0.92
NEDD9-202ENST00000379446 NEFMP07197 916 aa9.26□□□□□ -0.93
NEDD9-202ENST00000379446 ARXQ96QS3 562 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms