RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 ZFYVE16Q7Z3T8 1539 aa34.24■■■■□ 3.07
VSX1-201ENST00000376707 POGZQ7Z3K3 1410 aa34.23■■■■□ 3.07
VSX1-201ENST00000376707 MAGI2Q86UL8 1455 aa34.23■■■■□ 3.07
VSX1-201ENST00000376707 LRRIQ1Q96JM4 1722 aa34.23■■■■□ 3.07
VSX1-201ENST00000376707 PCF11O94913 1555 aaKnown RBP34.23■■■■□ 3.07
VSX1-201ENST00000376707 YEATS2Q9ULM3 1422 aa34.21■■■■□ 3.07
VSX1-201ENST00000376707 CCDC18Q5T9S5 1454 aa34.2■■■■□ 3.07
VSX1-201ENST00000376707 MADDQ8WXG6 1647 aa34.18■■■■□ 3.06
VSX1-201ENST00000376707 ARHGAP5Q13017 1502 aa34.17■■■■□ 3.06
VSX1-201ENST00000376707 FYCO1Q9BQS8 1478 aa34.13■■■■□ 3.05
VSX1-201ENST00000376707 ZNF518AQ6AHZ1 1483 aa34.07■■■■□ 3.05
VSX1-201ENST00000376707 RIMS1Q86UR5 1692 aaKnown RBP34.05■■■■□ 3.04
VSX1-201ENST00000376707 ATP10AO60312 1499 aa34.04■■■■□ 3.04
VSX1-201ENST00000376707 SIGLEC1Q9BZZ2 1709 aa34.04■■■■□ 3.04
VSX1-201ENST00000376707 MLECQ14165 292 aa34.03■■■■□ 3.04
VSX1-201ENST00000376707 AFAP1Q8N556 730 aa34.03■■■■□ 3.04
VSX1-201ENST00000376707 C9orf84Q5VXU9 1444 aa34.01■■■■□ 3.03
VSX1-201ENST00000376707 PREX2Q70Z35 1606 aa34.01■■■■□ 3.03
VSX1-201ENST00000376707 MYT1LQ9UL68 1186 aa34■■■■□ 3.03
VSX1-201ENST00000376707 CDC42BPBQ9Y5S2 1711 aa34■■■■□ 3.03
VSX1-201ENST00000376707 KDM5CP41229 1560 aa33.98■■■■□ 3.03
VSX1-201ENST00000376707 PLPPR3Q6T4P5 718 aa33.96■■■■□ 3.03
VSX1-201ENST00000376707 ABCC1P33527 1531 aa33.92■■■■□ 3.02
VSX1-201ENST00000376707 ILDR1Q86SU0 546 aaPredicted RBP33.91■■■■□ 3.02
VSX1-201ENST00000376707 ARHGEF12Q9NZN5 1544 aa33.89■■■■□ 3.02
VSX1-201ENST00000376707 LMTK3Q96Q04 1460 aa33.88■■■■□ 3.01
VSX1-201ENST00000376707 TRAPPC8Q9Y2L5 1435 aa33.88■■■■□ 3.01
VSX1-201ENST00000376707 CDC42BPAQ5VT25 1732 aa33.88■■■■□ 3.01
VSX1-201ENST00000376707 MLH3Q9UHC1 1453 aa33.88■■■■□ 3.01
VSX1-201ENST00000376707 FER1L4A9Z1Z3 1794 aa33.88■■■■□ 3.01
VSX1-201ENST00000376707 DIP2CQ9Y2E4 1556 aa33.85■■■■□ 3.01
VSX1-201ENST00000376707 ZNF777Q9ULD5 760 aaPredicted RBP33.85■■■■□ 3.01
VSX1-201ENST00000376707 ITSN2Q9NZM3 1697 aa33.84■■■■□ 3.01
VSX1-201ENST00000376707 MTUS2Q5JR59 1369 aa33.83■■■■□ 3.01
VSX1-201ENST00000376707 GPATCH8Q9UKJ3 1502 aaKnown RBP33.82■■■■□ 3
VSX1-201ENST00000376707 CEP162Q5TB80 1403 aa33.81■■■■□ 3
VSX1-201ENST00000376707 ABCA6Q8N139 1617 aa33.79■■■■□ 3
VSX1-201ENST00000376707 REREQ9P2R6 1566 aa33.79■■■■□ 3
VSX1-201ENST00000376707 CCNB3Q8WWL7 1395 aa33.77■■■■□ 3
VSX1-201ENST00000376707 CFDP1Q9UEE9 299 aaPredicted RBP33.76■■■□□ 2.99
VSX1-201ENST00000376707 SAMD9LQ8IVG5 1584 aa33.76■■■□□ 2.99
VSX1-201ENST00000376707 HSPA2P54652 639 aa33.74■■■□□ 2.99
VSX1-201ENST00000376707 SYCP2Q9BX26 1530 aa33.73■■■□□ 2.99
VSX1-201ENST00000376707 HNRNPMP52272 730 aaKnown RBP eCLIP33.71■■■□□ 2.99
VSX1-201ENST00000376707 CEBPAP49715 358 aaPredicted RBP33.7■■■□□ 2.99
VSX1-201ENST00000376707 KIDINS220Q9ULH0 1771 aa33.7■■■□□ 2.98
VSX1-201ENST00000376707 AGLP35573 1532 aa33.69■■■□□ 2.98
VSX1-201ENST00000376707 PLEKHH2Q8IVE3 1493 aa33.69■■■□□ 2.98
VSX1-201ENST00000376707 SPAG9O60271 1321 aaKnown RBP33.68■■■□□ 2.98
VSX1-201ENST00000376707 KIAA1107Q9UPP5 1409 aa33.67■■■□□ 2.98
VSX1-201ENST00000376707 EHBP1L1Q8N3D4 1523 aa33.67■■■□□ 2.98
VSX1-201ENST00000376707 ESF1Q9H501 851 aaKnown RBP33.65■■■□□ 2.98
VSX1-201ENST00000376707 TIAM1Q13009 1591 aa33.6■■■□□ 2.97
VSX1-201ENST00000376707 PREX1Q8TCU6 1659 aa33.58■■■□□ 2.97
VSX1-201ENST00000376707 ATP7AQ04656 1500 aa33.57■■■□□ 2.96
VSX1-201ENST00000376707 LOC105371045A0A1W2PR82 267 aa33.56■■■□□ 2.96
VSX1-201ENST00000376707 ZNF644Q9H582 1327 aaPredicted RBP33.54■■■□□ 2.96
VSX1-201ENST00000376707 UHRF1BP1Q6BDS2 1440 aa33.53■■■□□ 2.96
VSX1-201ENST00000376707 CNTLNQ9NXG0 1405 aa33.53■■■□□ 2.96
VSX1-201ENST00000376707 INO80Q9ULG1 1556 aaPredicted RBP33.52■■■□□ 2.96
VSX1-201ENST00000376707 FBXO41Q8TF61 875 aa33.51■■■□□ 2.95
VSX1-201ENST00000376707 C3P01024 1663 aa33.49■■■□□ 2.95
VSX1-201ENST00000376707 A2MP01023 1474 aa33.48■■■□□ 2.95
VSX1-201ENST00000376707 NCOA2Q15596 1464 aa33.47■■■□□ 2.95
VSX1-201ENST00000376707 SUPT6HQ7KZ85 1726 aaKnown RBP33.46■■■□□ 2.95
VSX1-201ENST00000376707 VPS8Q8N3P4 1428 aa33.45■■■□□ 2.95
VSX1-201ENST00000376707 MBD5Q9P267 1494 aa33.45■■■□□ 2.95
VSX1-201ENST00000376707 PLXNC1O60486 1568 aa33.43■■■□□ 2.94
VSX1-201ENST00000376707 SETD1BQ9UPS6 1966 aaKnown RBP33.41■■■□□ 2.94
VSX1-201ENST00000376707 RTEL1-TNFRSF6BF6WH68 1400 aa33.37■■■□□ 2.93
VSX1-201ENST00000376707 GGT6Q6P531 493 aa33.37■■■□□ 2.93
VSX1-201ENST00000376707 ZMYM3Q14202 1370 aa33.36■■■□□ 2.93
VSX1-201ENST00000376707 MROH2AA6NES4 1674 aa33.36■■■□□ 2.93
VSX1-201ENST00000376707 ADGBQ8N7X0 1667 aa33.36■■■□□ 2.93
VSX1-201ENST00000376707 CAMSAP2Q08AD1 1489 aa33.36■■■□□ 2.93
VSX1-201ENST00000376707 DMRT2Q9Y5R5 561 aa33.35■■■□□ 2.93
VSX1-201ENST00000376707 LRRC9Q6ZRR7 1453 aa33.34■■■□□ 2.93
VSX1-201ENST00000376707 CCDC141Q6ZP82 1450 aa33.33■■■□□ 2.93
VSX1-201ENST00000376707 NPATQ14207 1427 aa33.33■■■□□ 2.93
VSX1-201ENST00000376707 RSPH4AQ5TD94 716 aa33.32■■■□□ 2.92
VSX1-201ENST00000376707 CLTCQ00610 1675 aaKnown RBP33.29■■■□□ 2.92
VSX1-201ENST00000376707 PPP6R1Q9UPN7 881 aa33.28■■■□□ 2.92
VSX1-201ENST00000376707 DHX29Q7Z478 1369 aaKnown RBP33.28■■■□□ 2.92
VSX1-201ENST00000376707 STRCQ7RTU9 1775 aa33.28■■■□□ 2.92
VSX1-201ENST00000376707 CERKQ8TCT0 537 aa33.27■■■□□ 2.92
VSX1-201ENST00000376707 MAP3K1Q13233 1512 aa33.24■■■□□ 2.91
VSX1-201ENST00000376707 KANK4Q5T7N3 995 aaPredicted RBP33.22■■■□□ 2.91
VSX1-201ENST00000376707 TSPY4P0CV99 314 aa33.21■■■□□ 2.91
VSX1-201ENST00000376707 TSPY10P0CW01 314 aa33.21■■■□□ 2.91
VSX1-201ENST00000376707 ARHGEF5Q12774 1597 aa33.21■■■□□ 2.91
VSX1-201ENST00000376707 KIF3BO15066 747 aa33.19■■■□□ 2.9
VSX1-201ENST00000376707 PTPRTO14522 1441 aa33.19■■■□□ 2.9
VSX1-201ENST00000376707 PTPRKQ15262 1439 aa33.19■■■□□ 2.9
VSX1-201ENST00000376707 NCOA1Q15788 1441 aa33.17■■■□□ 2.9
VSX1-201ENST00000376707 CAMSAP1Q5T5Y3 1602 aa33.13■■■□□ 2.89
VSX1-201ENST00000376707 MYOM3Q5VTT5 1437 aa33.12■■■□□ 2.89
VSX1-201ENST00000376707 MYO3AQ8NEV4 1616 aa33.11■■■□□ 2.89
VSX1-201ENST00000376707 APLP2Q06481 763 aa33.11■■■□□ 2.89
VSX1-201ENST00000376707 MIA2Q96PC5 1412 aa33.11■■■□□ 2.89
VSX1-201ENST00000376707 CEP170BQ9Y4F5 1589 aaPredicted RBP33.07■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms