RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 DOK7Q18PE1 504 aa11.08□□□□□ -0.64
USP48-202ENST00000374730 KIF3CO14782 793 aa11.07□□□□□ -0.64
USP48-202ENST00000374730 GTPBP6O43824 516 aaPredicted RBP11.07□□□□□ -0.64
USP48-202ENST00000374730 C2orf72A6NCS6 295 aa11.04□□□□□ -0.64
USP48-202ENST00000374730 TMC2Q8TDI7 906 aa11.03□□□□□ -0.64
USP48-202ENST00000374730 BBXQ8WY36 941 aaPredicted RBP11.03□□□□□ -0.64
USP48-202ENST00000374730 RIMBP2O15034 1052 aa11.02□□□□□ -0.65
USP48-202ENST00000374730 ZNF710Q8N1W2 664 aa11.01□□□□□ -0.65
USP48-202ENST00000374730 ZSWIM6Q9HCJ5 1215 aa11□□□□□ -0.65
USP48-202ENST00000374730 PCDH10Q9P2E7 1040 aa10.99□□□□□ -0.65
USP48-202ENST00000374730 HOXB1P14653 301 aaPredicted RBP10.97□□□□□ -0.65
USP48-202ENST00000374730 GPHNQ9NQX3 736 aaPredicted RBP10.96□□□□□ -0.65
USP48-202ENST00000374730 EMP3P54852 163 aa10.95□□□□□ -0.66
USP48-202ENST00000374730 MARVELD3Q96A59 401 aa10.95□□□□□ -0.66
USP48-202ENST00000374730 SLC34A2O95436 690 aa10.93□□□□□ -0.66
USP48-202ENST00000374730 FOXK1P85037 733 aa10.93□□□□□ -0.66
USP48-202ENST00000374730 GPR153Q6NV75 609 aa10.92□□□□□ -0.66
USP48-202ENST00000374730 CRISPLD2Q9H0B8 497 aa10.92□□□□□ -0.66
USP48-202ENST00000374730 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.92□□□□□ -0.66
USP48-202ENST00000374730 DSG2Q14126 1118 aa10.88□□□□□ -0.67
USP48-202ENST00000374730 CDAN1Q8IWY9 1227 aa10.88□□□□□ -0.67
USP48-202ENST00000374730 PLPP6Q8IY26 295 aa10.88□□□□□ -0.67
USP48-202ENST00000374730 PDE4AP27815 886 aa10.87□□□□□ -0.67
USP48-202ENST00000374730 SPRYD3Q8NCJ5 442 aa10.87□□□□□ -0.67
USP48-202ENST00000374730 NCKAP5LQ9HCH0 1330 aa10.86□□□□□ -0.67
USP48-202ENST00000374730 FAM205CA6NFA0 338 aa10.86□□□□□ -0.67
USP48-202ENST00000374730 HS3ST6Q96QI5 342 aa10.86□□□□□ -0.67
USP48-202ENST00000374730 ARSIQ5FYB1 569 aa10.85□□□□□ -0.67
USP48-202ENST00000374730 PCDHGA4Q9Y5G9 962 aa10.84□□□□□ -0.67
USP48-202ENST00000374730 ERBB3P21860 1342 aa10.84□□□□□ -0.67
USP48-202ENST00000374730 PPP1R15BQ5SWA1 713 aa10.83□□□□□ -0.68
USP48-202ENST00000374730 PTCD2Q8WV60 388 aaKnown RBP10.83□□□□□ -0.68
USP48-202ENST00000374730 POTEB3A0JP26 581 aa10.82□□□□□ -0.68
USP48-202ENST00000374730 MFSD10Q14728 455 aa10.82□□□□□ -0.68
USP48-202ENST00000374730 POTEBQ6S5H4 581 aa10.82□□□□□ -0.68
USP48-202ENST00000374730 CADPS2Q86UW7 1296 aa10.8□□□□□ -0.68
USP48-202ENST00000374730 KHSRPQ92945 711 aaKnown RBP eCLIP10.8□□□□□ -0.683e-7■■■□□ 15.4
USP48-202ENST00000374730 PAXIP1Q6ZW49 1069 aaPredicted RBP10.79□□□□□ -0.68
USP48-202ENST00000374730 DDX27Q96GQ7 796 aaKnown RBP10.79□□□□□ -0.68
USP48-202ENST00000374730 LARP6Q9BRS8 491 aaKnown RBP10.79□□□□□ -0.68
USP48-202ENST00000374730 ZNF316A6NFI3 1004 aaPredicted RBP10.77□□□□□ -0.69
USP48-202ENST00000374730 NUDT7P0C024 238 aa10.77□□□□□ -0.69
USP48-202ENST00000374730 VARS2Q5ST30 1063 aaKnown RBP10.77□□□□□ -0.69
USP48-202ENST00000374730 CFAP44Q96MT7 982 aa10.77□□□□□ -0.69
USP48-202ENST00000374730 TBC1D12O60347 775 aa10.76□□□□□ -0.69
USP48-202ENST00000374730 OXER1Q8TDS5 423 aa10.75□□□□□ -0.69
USP48-202ENST00000374730 KDM4FA0A1W2PPD8 638 aa10.74□□□□□ -0.69
USP48-202ENST00000374730 ZNF687Q8N1G0 1237 aa10.73□□□□□ -0.69
USP48-202ENST00000374730 KRTAP3-3Q9BYR6 98 aa10.72□□□□□ -0.69
USP48-202ENST00000374730 KRTAP3-2Q9BYR7 98 aa10.72□□□□□ -0.69
USP48-202ENST00000374730 PSDA5PKW4 1024 aaPredicted RBP10.7□□□□□ -0.7
USP48-202ENST00000374730 UPF1Q92900 1129 aaKnown RBP eCLIP10.7□□□□□ -0.7
USP48-202ENST00000374730 LHX6Q9UPM6 363 aa10.7□□□□□ -0.7
USP48-202ENST00000374730 PLSCR2Q9NRY7 297 aa10.69□□□□□ -0.7
USP48-202ENST00000374730 CAMK2BQ13554 666 aa10.67□□□□□ -0.7
USP48-202ENST00000374730 EMILIN3Q9NT22 766 aa10.64□□□□□ -0.71
USP48-202ENST00000374730 PBX2P40425 430 aa10.63□□□□□ -0.71
USP48-202ENST00000374730 MAP3K9P80192 1104 aa10.61□□□□□ -0.71
USP48-202ENST00000374730 SPNS2Q8IVW8 549 aa10.61□□□□□ -0.71
USP48-202ENST00000374730 EVI5O60447 810 aa10.6□□□□□ -0.71
USP48-202ENST00000374730 PPP4R3BQ5MIZ7 849 aa10.6□□□□□ -0.71
USP48-202ENST00000374730 ANO8Q9HCE9 1232 aaPredicted RBP10.6□□□□□ -0.71
USP48-202ENST00000374730 WDR70Q9NW82 654 aa10.57□□□□□ -0.72
USP48-202ENST00000374730 POTEEQ6S8J3 1075 aa10.56□□□□□ -0.72
USP48-202ENST00000374730 FOSBP53539 338 aa10.55□□□□□ -0.72
USP48-202ENST00000374730 LSM11P83369 360 aaKnown RBP eCLIP10.55□□□□□ -0.726e-12■■■■■ 77.1
USP48-202ENST00000374730 JPH4Q96JJ6 628 aa10.55□□□□□ -0.72
USP48-202ENST00000374730 TSHZ2Q9NRE2 1034 aa10.55□□□□□ -0.72
USP48-202ENST00000374730 ARHGAP33O14559 1287 aa10.54□□□□□ -0.72
USP48-202ENST00000374730 PLCB2Q00722 1185 aa10.54□□□□□ -0.72
USP48-202ENST00000374730 E2F4Q16254 413 aa10.54□□□□□ -0.72
USP48-202ENST00000374730 ZNF454Q8N9F8 522 aa10.54□□□□□ -0.72
USP48-202ENST00000374730 DPYSL4O14531 572 aa10.53□□□□□ -0.72
USP48-202ENST00000374730 MMRN1Q13201 1228 aa10.53□□□□□ -0.72
USP48-202ENST00000374730 ARIH1Q9Y4X5 557 aaPredicted RBP10.52□□□□□ -0.73
USP48-202ENST00000374730 PTGER2P43116 358 aa10.51□□□□□ -0.73
USP48-202ENST00000374730 BCL2L12Q9HB09 334 aa10.51□□□□□ -0.73
USP48-202ENST00000374730 AXIN2Q9Y2T1 843 aa10.51□□□□□ -0.73
USP48-202ENST00000374730 KCNH8Q96L42 1107 aa10.5□□□□□ -0.73
USP48-202ENST00000374730 PDIA6Q15084 440 aa10.49□□□□□ -0.73
USP48-202ENST00000374730 ANKRD13DQ6ZTN6 518 aa10.48□□□□□ -0.73
USP48-202ENST00000374730 ZDHHC16Q969W1 377 aa10.48□□□□□ -0.73
USP48-202ENST00000374730 SPDYE16A6NNV3 312 aaPredicted RBP10.47□□□□□ -0.73
USP48-202ENST00000374730 PHF14O94880 888 aa10.47□□□□□ -0.73
USP48-202ENST00000374730 TK2O00142 265 aa10.46□□□□□ -0.73
USP48-202ENST00000374730 PSEN2P49810 448 aa10.46□□□□□ -0.73
USP48-202ENST00000374730 KCNK17Q96T54 332 aa10.46□□□□□ -0.73
USP48-202ENST00000374730 FBXW7Q969H0 707 aa10.45□□□□□ -0.74
USP48-202ENST00000374730 PCDHGA10Q9Y5H3 936 aa10.45□□□□□ -0.74
USP48-202ENST00000374730 PTPREP23469 700 aa10.44□□□□□ -0.74
USP48-202ENST00000374730 DMRTA1Q5VZB9 504 aa10.44□□□□□ -0.74
USP48-202ENST00000374730 TYW1BQ6NUM6 668 aa10.44□□□□□ -0.74
USP48-202ENST00000374730 EPAS1Q99814 870 aa10.44□□□□□ -0.74
USP48-202ENST00000374730 ADAM33Q9BZ11 813 aa10.44□□□□□ -0.74
USP48-202ENST00000374730 ADGRD1Q6QNK2 874 aa10.43□□□□□ -0.74
USP48-202ENST00000374730 MYT1LQ9UL68 1186 aa10.42□□□□□ -0.74
USP48-202ENST00000374730 SLC4A5Q9BY07 1137 aa10.41□□□□□ -0.74
USP48-202ENST00000374730 RNF166Q96A37 237 aaPredicted RBP10.4□□□□□ -0.74
USP48-202ENST00000374730 HRO43593 1189 aa10.38□□□□□ -0.75
USP48-202ENST00000374730 DDX12PQ92771 950 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms