RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GCC2Q8IWJ2 1684 aa20.44■□□□□ 0.86
PTPRF-202ENST00000372405 CDC42BPBQ9Y5S2 1711 aa20.43■□□□□ 0.86
PTPRF-202ENST00000372405 CLSPNQ9HAW4 1339 aa20.43■□□□□ 0.86
PTPRF-202ENST00000372405 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.43■□□□□ 0.86
PTPRF-202ENST00000372405 CHIC2Q9UKJ5 165 aa20.43■□□□□ 0.86
PTPRF-202ENST00000372405 AKNAQ7Z591 1439 aa20.42■□□□□ 0.86
PTPRF-202ENST00000372405 MAPKBP1O60336 1514 aa20.42■□□□□ 0.86
PTPRF-202ENST00000372405 PREX2Q70Z35 1606 aa20.42■□□□□ 0.86
PTPRF-202ENST00000372405 CROCC2H7BZ55 1655 aa20.39■□□□□ 0.86
PTPRF-202ENST00000372405 ZNF777Q9ULD5 760 aaPredicted RBP20.39■□□□□ 0.85
PTPRF-202ENST00000372405 RRP7BPQ9NSQ0 103 aa20.38■□□□□ 0.85
PTPRF-202ENST00000372405 KDM6BO15054 1643 aa20.38■□□□□ 0.85
PTPRF-202ENST00000372405 ROCK1Q13464 1354 aa20.36■□□□□ 0.85
PTPRF-202ENST00000372405 MYO5CQ9NQX4 1742 aa20.35■□□□□ 0.85
PTPRF-202ENST00000372405 SAMD9LQ8IVG5 1584 aa20.35■□□□□ 0.85
PTPRF-202ENST00000372405 ADGBQ8N7X0 1667 aa20.33■□□□□ 0.84
PTPRF-202ENST00000372405 KCNH8Q96L42 1107 aa20.33■□□□□ 0.84
PTPRF-202ENST00000372405 MBD5Q9P267 1494 aa20.3■□□□□ 0.84
PTPRF-202ENST00000372405 WDR7Q9Y4E6 1490 aa20.3■□□□□ 0.84
PTPRF-202ENST00000372405 ARHGEF5Q12774 1597 aa20.29■□□□□ 0.84
PTPRF-202ENST00000372405 ADGRL2O95490 1459 aa20.29■□□□□ 0.84
PTPRF-202ENST00000372405 ARHGAP5Q13017 1502 aa20.29■□□□□ 0.84
PTPRF-202ENST00000372405 NCOA1Q15788 1441 aa20.28■□□□□ 0.84
PTPRF-202ENST00000372405 SHANK2Q9UPX8 1470 aa20.27■□□□□ 0.84
PTPRF-202ENST00000372405 PLCH2O75038 1416 aa20.26■□□□□ 0.83
PTPRF-202ENST00000372405 SYCP2Q9BX26 1530 aa20.25■□□□□ 0.83
PTPRF-202ENST00000372405 ASXL2Q76L83 1435 aa20.25■□□□□ 0.83
PTPRF-202ENST00000372405 HNRNPMP52272 730 aaKnown RBP eCLIP20.25■□□□□ 0.833e-10■■■■□ 26
PTPRF-202ENST00000372405 C9orf84Q5VXU9 1444 aa20.23■□□□□ 0.83
PTPRF-202ENST00000372405 DENND4BO75064 1496 aaPredicted RBP20.22■□□□□ 0.83
PTPRF-202ENST00000372405 ABCA9Q8IUA7 1624 aa20.22■□□□□ 0.83
PTPRF-202ENST00000372405 CCDC141Q6ZP82 1450 aa20.21■□□□□ 0.83
PTPRF-202ENST00000372405 ARHGEF12Q9NZN5 1544 aa20.2■□□□□ 0.82
PTPRF-202ENST00000372405 RIMBP3CA6NJZ7 1639 aa20.2■□□□□ 0.82
PTPRF-202ENST00000372405 RIMBP3BA6NNM3 1639 aa20.2■□□□□ 0.82
PTPRF-202ENST00000372405 RIMBP3Q9UFD9 1639 aa20.2■□□□□ 0.82
PTPRF-202ENST00000372405 ARAP3Q8WWN8 1544 aa20.19■□□□□ 0.82
PTPRF-202ENST00000372405 ANKRD30AQ9BXX3 1397 aa20.19■□□□□ 0.82
PTPRF-202ENST00000372405 KIAA1107Q9UPP5 1409 aa20.19■□□□□ 0.82
PTPRF-202ENST00000372405 SIN3AQ96ST3 1273 aa20.18■□□□□ 0.82
PTPRF-202ENST00000372405 PLEKHH2Q8IVE3 1493 aa20.17■□□□□ 0.82
PTPRF-202ENST00000372405 ABCC1P33527 1531 aa20.16■□□□□ 0.82
PTPRF-202ENST00000372405 MAST1Q9Y2H9 1570 aa20.15■□□□□ 0.82
PTPRF-202ENST00000372405 TSPY4P0CV99 314 aa20.15■□□□□ 0.82
PTPRF-202ENST00000372405 TSPY10P0CW01 314 aa20.15■□□□□ 0.82
PTPRF-202ENST00000372405 TRIM52Q96A61 297 aa20.15■□□□□ 0.82
PTPRF-202ENST00000372405 NPM1P06748 294 aaKnown RBP eCLIP20.14■□□□□ 0.81
PTPRF-202ENST00000372405 RSPH4AQ5TD94 716 aa20.14■□□□□ 0.81
PTPRF-202ENST00000372405 EFCAB2Q5VUJ9 269 aa20.14■□□□□ 0.81
PTPRF-202ENST00000372405 ANKRD50Q9ULJ7 1429 aa20.12■□□□□ 0.81
PTPRF-202ENST00000372405 MPHOSPH9Q99550 1183 aa20.11■□□□□ 0.81
PTPRF-202ENST00000372405 KIF15Q9NS87 1388 aa20.11■□□□□ 0.81
PTPRF-202ENST00000372405 NEUROD1Q13562 356 aa20.1■□□□□ 0.81
PTPRF-202ENST00000372405 TRAPPC8Q9Y2L5 1435 aa20.09■□□□□ 0.81
PTPRF-202ENST00000372405 FANCAO15360 1455 aa20.09■□□□□ 0.81
PTPRF-202ENST00000372405 PZPP20742 1482 aa20.09■□□□□ 0.81
PTPRF-202ENST00000372405 CYB5RLQ6IPT4 315 aa20.08■□□□□ 0.81
PTPRF-202ENST00000372405 ACIN1Q9UKV3 1341 aaKnown RBP20.08■□□□□ 0.81
PTPRF-202ENST00000372405 PLXNC1O60486 1568 aa20.08■□□□□ 0.8
PTPRF-202ENST00000372405 FOXD1Q16676 465 aa20.03■□□□□ 0.8
PTPRF-202ENST00000372405 TIMELESSQ9UNS1 1208 aa20.02■□□□□ 0.8
PTPRF-202ENST00000372405 ZNF316A6NFI3 1004 aaPredicted RBP20.01■□□□□ 0.79
PTPRF-202ENST00000372405 KDM5DQ9BY66 1539 aa20.01■□□□□ 0.79
PTPRF-202ENST00000372405 SLC4A1APQ9BWU0 796 aaKnown RBP20.01■□□□□ 0.79
PTPRF-202ENST00000372405 ADGRL1O94910 1474 aa20■□□□□ 0.79
PTPRF-202ENST00000372405 CD109Q6YHK3 1445 aa20■□□□□ 0.79
PTPRF-202ENST00000372405 ANKRD30BQ9BXX2 1392 aa19.99■□□□□ 0.79
PTPRF-202ENST00000372405 AFAP1Q8N556 730 aa19.99■□□□□ 0.79
PTPRF-202ENST00000372405 ZFYVE16Q7Z3T8 1539 aa19.99■□□□□ 0.79
PTPRF-202ENST00000372405 DUOX2Q9NRD8 1548 aa19.97■□□□□ 0.79
PTPRF-202ENST00000372405 INO80Q9ULG1 1556 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-202ENST00000372405 SCAPERQ9BY12 1400 aa19.97■□□□□ 0.79
PTPRF-202ENST00000372405 NUP155O75694 1391 aa19.96■□□□□ 0.79
PTPRF-202ENST00000372405 UNC13BO14795 1591 aa19.96■□□□□ 0.79
PTPRF-202ENST00000372405 RTEL1-TNFRSF6BF6WH68 1400 aa19.96■□□□□ 0.79
PTPRF-202ENST00000372405 TONSLQ96HA7 1378 aa19.95■□□□□ 0.78
PTPRF-202ENST00000372405 CFAP74Q9C0B2 1584 aa19.94■□□□□ 0.78
PTPRF-202ENST00000372405 PPP1R15AO75807 674 aaPredicted RBP19.94■□□□□ 0.78
PTPRF-202ENST00000372405 SPAG9O60271 1321 aaKnown RBP19.94■□□□□ 0.78
PTPRF-202ENST00000372405 ATP7AQ04656 1500 aa19.93■□□□□ 0.78
PTPRF-202ENST00000372405 MAP3K4Q9Y6R4 1608 aa19.93■□□□□ 0.78
PTPRF-202ENST00000372405 ERBINQ96RT1 1412 aa19.92■□□□□ 0.78
PTPRF-202ENST00000372405 RPRD2Q5VT52 1461 aaKnown RBP19.91■□□□□ 0.78
PTPRF-202ENST00000372405 PKD2Q13563 968 aa19.91■□□□□ 0.78
PTPRF-202ENST00000372405 GLI2P10070 1586 aa19.91■□□□□ 0.78
PTPRF-202ENST00000372405 FAM135AQ9P2D6 1515 aa19.91■□□□□ 0.78
PTPRF-202ENST00000372405 MAGI2Q86UL8 1455 aa19.89■□□□□ 0.78
PTPRF-202ENST00000372405 KIDINS220Q9ULH0 1771 aa19.88■□□□□ 0.77
PTPRF-202ENST00000372405 IQGAP3Q86VI3 1631 aa19.88■□□□□ 0.77
PTPRF-202ENST00000372405 DIP2BQ9P265 1576 aa19.87■□□□□ 0.77
PTPRF-202ENST00000372405 ZNF518AQ6AHZ1 1483 aa19.87■□□□□ 0.77
PTPRF-202ENST00000372405 KDM5CP41229 1560 aa19.86■□□□□ 0.77
PTPRF-202ENST00000372405 NEO1Q92859 1461 aa19.86■□□□□ 0.77
PTPRF-202ENST00000372405 POGZQ7Z3K3 1410 aa19.86■□□□□ 0.77
PTPRF-202ENST00000372405 TEX14Q8IWB6 1497 aa19.84■□□□□ 0.77
PTPRF-202ENST00000372405 DIEXFQ68CQ4 756 aaKnown RBP19.84■□□□□ 0.77
PTPRF-202ENST00000372405 DEPDC5O75140 1603 aa19.82■□□□□ 0.76
PTPRF-202ENST00000372405 L3MBTL2Q969R5 705 aa19.81■□□□□ 0.76
PTPRF-202ENST00000372405 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.81■□□□□ 0.76
PTPRF-202ENST00000372405 HECW2Q9P2P5 1572 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms