RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 HDGFP51858 240 aaKnown RBP28.21■■■□□ 2.11
TM9SF3-201ENST00000371142 TRHP20396 242 aaPredicted RBP28.21■■■□□ 2.11
TM9SF3-201ENST00000371142 GGT6Q6P531 493 aa28.2■■■□□ 2.11
TM9SF3-201ENST00000371142 CARMIL1Q5VZK9 1371 aa28.19■■■□□ 2.1
TM9SF3-201ENST00000371142 ISY1Q9ULR0 285 aaKnown RBP28.18■■■□□ 2.1
TM9SF3-201ENST00000371142 CLSTN1O94985 981 aa28.17■■■□□ 2.1
TM9SF3-201ENST00000371142 PKD2Q13563 968 aa28.16■■■□□ 2.1
TM9SF3-201ENST00000371142 DRC7Q8IY82 874 aa28.16■■■□□ 2.1
TM9SF3-201ENST00000371142 CUX2O14529 1486 aa28.16■■■□□ 2.1
TM9SF3-201ENST00000371142 KTN1Q86UP2 1357 aaKnown RBP28.16■■■□□ 2.1
TM9SF3-201ENST00000371142 SETD5Q9C0A6 1442 aa28.14■■■□□ 2.09
TM9SF3-201ENST00000371142 CCER2I3L3R5 266 aa28.14■■■□□ 2.09
TM9SF3-201ENST00000371142 HDGFL2Q7Z4V5 671 aaPredicted RBP28.14■■■□□ 2.09
TM9SF3-201ENST00000371142 MSNP26038 577 aaKnown RBP28.13■■■□□ 2.09
TM9SF3-201ENST00000371142 CHAF1AQ13111 956 aaPredicted RBP28.12■■■□□ 2.09
TM9SF3-201ENST00000371142 PAK3O75914 559 aaPredicted RBP28.12■■■□□ 2.09
TM9SF3-201ENST00000371142 GNL2Q13823 731 aaKnown RBP28.1■■■□□ 2.09
TM9SF3-201ENST00000371142 SOGA1O94964 1423 aa28.1■■■□□ 2.09
TM9SF3-201ENST00000371142 ARHGAP35Q9NRY4 1499 aa28.1■■■□□ 2.09
TM9SF3-201ENST00000371142 L1TD1Q5T7N2 865 aaKnown RBP28.08■■■□□ 2.09
TM9SF3-201ENST00000371142 U2AF1L5P0DN76 240 aaPredicted RBP28.08■■■□□ 2.09
TM9SF3-201ENST00000371142 U2AF1Q01081 240 aaKnown RBP eCLIP28.08■■■□□ 2.09
TM9SF3-201ENST00000371142 ITPRIPQ8IWB1 547 aa28.08■■■□□ 2.09
TM9SF3-201ENST00000371142 NACADO15069 1562 aa28.08■■■□□ 2.09
TM9SF3-201ENST00000371142 ZNF330Q9Y3S2 320 aaPredicted RBP28.08■■■□□ 2.08
TM9SF3-201ENST00000371142 NCBP3Q53F19 620 aaKnown RBP28.07■■■□□ 2.08
TM9SF3-201ENST00000371142 IPO8O15397 1037 aaKnown RBP28.07■■■□□ 2.08
TM9SF3-201ENST00000371142 TIMELESSQ9UNS1 1208 aa28.06■■■□□ 2.08
TM9SF3-201ENST00000371142 KIAA1211Q6ZU35 1233 aa28.06■■■□□ 2.08
TM9SF3-201ENST00000371142 ROCK2O75116 1388 aaKnown RBP28.06■■■□□ 2.08
TM9SF3-201ENST00000371142 DEKP35659 375 aaKnown RBP28.05■■■□□ 2.08
TM9SF3-201ENST00000371142 RBM19Q9Y4C8 960 aaKnown RBP28.04■■■□□ 2.08
TM9SF3-201ENST00000371142 CFAP44Q96MT7 982 aa28.03■■■□□ 2.08
TM9SF3-201ENST00000371142 RCAN3Q9UKA8 241 aa28.03■■■□□ 2.08
TM9SF3-201ENST00000371142 CSB-PGBD3P0DP91 1061 aa28.01■■■□□ 2.07
TM9SF3-201ENST00000371142 KANK4Q5T7N3 995 aaPredicted RBP28■■■□□ 2.07
TM9SF3-201ENST00000371142 BAZ1AQ9NRL2 1556 aaPredicted RBP27.97■■■□□ 2.07
TM9SF3-201ENST00000371142 GZF1Q9H116 711 aaPredicted RBP27.97■■■□□ 2.07
TM9SF3-201ENST00000371142 RWDD1Q9H446 243 aaPredicted RBP27.97■■■□□ 2.07
TM9SF3-201ENST00000371142 SLKQ9H2G2 1235 aaPredicted RBP27.96■■■□□ 2.07
TM9SF3-201ENST00000371142 CALD1Q05682 793 aaKnown RBP27.94■■■□□ 2.06
TM9SF3-201ENST00000371142 MPHOSPH9Q99550 1183 aa27.94■■■□□ 2.06
TM9SF3-201ENST00000371142 GBP4Q96PP9 640 aa27.92■■■□□ 2.06
TM9SF3-201ENST00000371142 NUP155O75694 1391 aa27.92■■■□□ 2.06
TM9SF3-201ENST00000371142 RALBP1Q15311 655 aa27.92■■■□□ 2.06
TM9SF3-201ENST00000371142 CECR2Q9BXF3 1484 aa27.89■■■□□ 2.06
TM9SF3-201ENST00000371142 MFAP1P55081 439 aaKnown RBP27.89■■■□□ 2.06
TM9SF3-201ENST00000371142 VPS8Q8N3P4 1428 aa27.88■■■□□ 2.05
TM9SF3-201ENST00000371142 CHMP3Q9Y3E7 222 aa27.88■■■□□ 2.05
TM9SF3-201ENST00000371142 RAB3GAP2Q9H2M9 1393 aa27.87■■■□□ 2.05
TM9SF3-201ENST00000371142 CCDC146Q8IYE0 955 aa27.87■■■□□ 2.05
TM9SF3-201ENST00000371142 SMC4Q9NTJ3 1288 aa27.86■■■□□ 2.05
TM9SF3-201ENST00000371142 NUTM2DQ5VT03 806 aaPredicted RBP27.85■■■□□ 2.05
TM9SF3-201ENST00000371142 STK31Q9BXU1 1019 aa27.85■■■□□ 2.05
TM9SF3-201ENST00000371142 TRIM6-TRIM34B2RNG4 842 aa27.84■■■□□ 2.05
TM9SF3-201ENST00000371142 GORABQ5T7V8 394 aa27.84■■■□□ 2.05
TM9SF3-201ENST00000371142 SPAG9O60271 1321 aaKnown RBP27.83■■■□□ 2.05
TM9SF3-201ENST00000371142 CARMIL2Q6F5E8 1435 aa27.83■■■□□ 2.05
TM9SF3-201ENST00000371142 PMFBP1Q8TBY8 1022 aa27.83■■■□□ 2.04
TM9SF3-201ENST00000371142 TCERG1O14776 1098 aaKnown RBP27.81■■■□□ 2.04
TM9SF3-201ENST00000371142 CLUAP1Q96AJ1 413 aa27.81■■■□□ 2.04
TM9SF3-201ENST00000371142 AMER1Q5JTC6 1135 aaPredicted RBP27.81■■■□□ 2.04
TM9SF3-201ENST00000371142 SLC4A10Q6U841 1118 aa27.81■■■□□ 2.04
TM9SF3-201ENST00000371142 ARID3AQ99856 593 aa27.81■■■□□ 2.04
TM9SF3-201ENST00000371142 ABCC8Q09428 1581 aa27.8■■■□□ 2.04
TM9SF3-201ENST00000371142 EIF3AQ14152 1382 aaKnown RBP27.8■■■□□ 2.04
TM9SF3-201ENST00000371142 HSP90B1P14625 803 aaKnown RBP27.8■■■□□ 2.04
TM9SF3-201ENST00000371142 PTMSP20962 102 aa27.8■■■□□ 2.04
TM9SF3-201ENST00000371142 ANKRD30AQ9BXX3 1397 aa27.79■■■□□ 2.04
TM9SF3-201ENST00000371142 KIAA2012Q0VF49 1180 aa27.79■■■□□ 2.04
TM9SF3-201ENST00000371142 NOL8Q76FK4 1167 aaKnown RBP27.78■■■□□ 2.04
TM9SF3-201ENST00000371142 TAF7LQ5H9L4 462 aa27.78■■■□□ 2.04
TM9SF3-201ENST00000371142 FOXD4L1Q9NU39 408 aa27.78■■■□□ 2.04
TM9SF3-201ENST00000371142 EFCAB2Q5VUJ9 269 aa27.77■■■□□ 2.04
TM9SF3-201ENST00000371142 KIF3BO15066 747 aa27.77■■■□□ 2.04
TM9SF3-201ENST00000371142 CCDC9Q9Y3X0 531 aaKnown RBP27.77■■■□□ 2.04
TM9SF3-201ENST00000371142 HTATSF1O43719 755 aaKnown RBP27.76■■■□□ 2.03
TM9SF3-201ENST00000371142 GPATCH3Q96I76 525 aa27.76■■■□□ 2.03
TM9SF3-201ENST00000371142 HNRNPMP52272 730 aaKnown RBP eCLIP27.75■■■□□ 2.03
TM9SF3-201ENST00000371142 TERF2IPQ9NYB0 399 aa27.73■■■□□ 2.03
TM9SF3-201ENST00000371142 SYAP1Q96A49 352 aaPredicted RBP27.73■■■□□ 2.03
TM9SF3-201ENST00000371142 HMMRO75330 724 aa27.71■■■□□ 2.03
TM9SF3-201ENST00000371142 LTV1Q96GA3 475 aaPredicted RBP27.7■■■□□ 2.03
TM9SF3-201ENST00000371142 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.7■■■□□ 2.03
TM9SF3-201ENST00000371142 L3MBTL2Q969R5 705 aa27.69■■■□□ 2.02
TM9SF3-201ENST00000371142 TMX4Q9H1E5 349 aaPredicted RBP27.69■■■□□ 2.02
TM9SF3-201ENST00000371142 TDRD9Q8NDG6 1382 aaKnown RBP27.69■■■□□ 2.02
TM9SF3-201ENST00000371142 CENPJQ9HC77 1338 aaPredicted RBP27.69■■■□□ 2.02
TM9SF3-201ENST00000371142 NGDNQ8NEJ9 315 aaKnown RBP27.69■■■□□ 2.02
TM9SF3-201ENST00000371142 NOC3LQ8WTT2 800 aaKnown RBP27.69■■■□□ 2.02
TM9SF3-201ENST00000371142 NUTM2FA1L443 756 aa27.68■■■□□ 2.02
TM9SF3-201ENST00000371142 FMN1Q68DA7 1419 aa27.68■■■□□ 2.02
TM9SF3-201ENST00000371142 TPM4P67936 248 aa27.67■■■□□ 2.02
TM9SF3-201ENST00000371142 CCDC88BA6NC98 1476 aa27.66■■■□□ 2.02
TM9SF3-201ENST00000371142 AMPHP49418 695 aa27.66■■■□□ 2.02
TM9SF3-201ENST00000371142 GOLGA6L3A6NEY3 463 aa27.65■■■□□ 2.02
TM9SF3-201ENST00000371142 CHMP4AQ9BY43 222 aa27.65■■■□□ 2.02
TM9SF3-201ENST00000371142 RRP7AQ9Y3A4 280 aaKnown RBP27.63■■■□□ 2.01
TM9SF3-201ENST00000371142 CREBRFQ8IUR6 639 aa27.62■■■□□ 2.01
TM9SF3-201ENST00000371142 FOXD4L5Q5VV16 416 aaPredicted RBP27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms