RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 STK25O00506 426 aa3.29□□□□□ -1.88
BRCA1-202ENST00000354071 POTEBQ6S5H4 581 aa3.29□□□□□ -1.88
BRCA1-202ENST00000354071 C7P10643 843 aa3.28□□□□□ -1.88
BRCA1-202ENST00000354071 PRIM1P49642 420 aaKnown RBP3.28□□□□□ -1.88
BRCA1-202ENST00000354071 OCEL1Q9H607 264 aa3.28□□□□□ -1.88
BRCA1-202ENST00000354071 EMILIN3Q9NT22 766 aa3.28□□□□□ -1.88
BRCA1-202ENST00000354071 SLC39A7Q92504 469 aa3.27□□□□□ -1.89
BRCA1-202ENST00000354071 KCNV2Q8TDN2 545 aa3.27□□□□□ -1.89
BRCA1-202ENST00000354071 LHX8Q68G74 356 aa3.26□□□□□ -1.89
BRCA1-202ENST00000354071 SUPT5HO00267 1087 aaKnown RBP3.26□□□□□ -1.89
BRCA1-202ENST00000354071 POTEEQ6S8J3 1075 aa3.26□□□□□ -1.89
BRCA1-202ENST00000354071 STK24Q9Y6E0 443 aa3.25□□□□□ -1.89
BRCA1-202ENST00000354071 PLEKHG5O94827 1062 aa3.25□□□□□ -1.89
BRCA1-202ENST00000354071 FOXK1P85037 733 aa3.25□□□□□ -1.89
BRCA1-202ENST00000354071 GPR37O15354 613 aa3.25□□□□□ -1.89
BRCA1-202ENST00000354071 GPHNQ9NQX3 736 aaPredicted RBP3.25□□□□□ -1.89
BRCA1-202ENST00000354071 SLC34A2O95436 690 aa3.25□□□□□ -1.89
BRCA1-202ENST00000354071 BRPF1P55201 1214 aaPredicted RBP3.25□□□□□ -1.89
BRCA1-202ENST00000354071 GPR153Q6NV75 609 aa3.25□□□□□ -1.89
BRCA1-202ENST00000354071 C14orf37Q86TY3 774 aa3.25□□□□□ -1.89
BRCA1-202ENST00000354071 DSG2Q14126 1118 aa3.24□□□□□ -1.89
BRCA1-202ENST00000354071 LMOD2Q6P5Q4 547 aa3.23□□□□□ -1.89
BRCA1-202ENST00000354071 DAXXQ9UER7 740 aaPredicted RBP3.23□□□□□ -1.89
BRCA1-202ENST00000354071 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.23□□□□□ -1.89
BRCA1-202ENST00000354071 BOLA1Q9Y3E2 137 aa3.23□□□□□ -1.89
BRCA1-202ENST00000354071 PAK3O75914 559 aaPredicted RBP3.22□□□□□ -1.89
BRCA1-202ENST00000354071 C2orf72A6NCS6 295 aa3.22□□□□□ -1.89
BRCA1-202ENST00000354071 ARXQ96QS3 562 aa3.22□□□□□ -1.89
BRCA1-202ENST00000354071 ANO8Q9HCE9 1232 aaPredicted RBP3.22□□□□□ -1.89
BRCA1-202ENST00000354071 OXER1Q8TDS5 423 aa3.22□□□□□ -1.89
BRCA1-202ENST00000354071 NLRP6P59044 892 aa3.21□□□□□ -1.9
BRCA1-202ENST00000354071 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.21□□□□□ -1.94e-6■■■■■ 27.4
BRCA1-202ENST00000354071 PTCD2Q8WV60 388 aaKnown RBP3.21□□□□□ -1.9
BRCA1-202ENST00000354071 PCDH10Q9P2E7 1040 aa3.21□□□□□ -1.9
BRCA1-202ENST00000354071 SEMA3EO15041 775 aa3.2□□□□□ -1.9
BRCA1-202ENST00000354071 SLC24A3Q9HC58 644 aa3.2□□□□□ -1.9
BRCA1-202ENST00000354071 PTGER2P43116 358 aa3.19□□□□□ -1.9
BRCA1-202ENST00000354071 NEUROD2Q15784 382 aa3.19□□□□□ -1.9
BRCA1-202ENST00000354071 ZC3H15Q8WU90 426 aaKnown RBP3.19□□□□□ -1.9
BRCA1-202ENST00000354071 UBTFP17480 764 aaKnown RBP3.18□□□□□ -1.9
BRCA1-202ENST00000354071 NPDC1Q9NQX5 325 aaPredicted RBP3.18□□□□□ -1.9
BRCA1-202ENST00000354071 HOMEZQ8IX15 550 aa3.17□□□□□ -1.9
BRCA1-202ENST00000354071 GPBP1L1Q9HC44 474 aaPredicted RBP3.17□□□□□ -1.9
BRCA1-202ENST00000354071 PDIA6Q15084 440 aa3.17□□□□□ -1.9
BRCA1-202ENST00000354071 DCBLD2Q96PD2 775 aa3.17□□□□□ -1.9
BRCA1-202ENST00000354071 KHSRPQ92945 711 aaKnown RBP eCLIP3.17□□□□□ -1.9
BRCA1-202ENST00000354071 C3orf80F5H4A9 247 aa3.17□□□□□ -1.9
BRCA1-202ENST00000354071 KRTAP3-3Q9BYR6 98 aa3.16□□□□□ -1.9
BRCA1-202ENST00000354071 KRTAP3-2Q9BYR7 98 aa3.16□□□□□ -1.9
BRCA1-202ENST00000354071 ST18O60284 1047 aa3.16□□□□□ -1.9
BRCA1-202ENST00000354071 TESPA1A2RU30 521 aaPredicted RBP3.15□□□□□ -1.9
BRCA1-202ENST00000354071 OSBPP22059 807 aa3.15□□□□□ -1.9
BRCA1-202ENST00000354071 P3H3Q8IVL6 736 aa3.15□□□□□ -1.91
BRCA1-202ENST00000354071 PPP1R15BQ5SWA1 713 aa3.14□□□□□ -1.91
BRCA1-202ENST00000354071 MAMSTRQ6ZN01 415 aa3.14□□□□□ -1.91
BRCA1-202ENST00000354071 MLLT3P42568 568 aaPredicted RBP3.14□□□□□ -1.91
BRCA1-202ENST00000354071 MKRN3Q13064 507 aaKnown RBP3.14□□□□□ -1.91
BRCA1-202ENST00000354071 TTC13Q8NBP0 860 aa3.14□□□□□ -1.91
BRCA1-202ENST00000354071 WDR70Q9NW82 654 aa3.14□□□□□ -1.91
BRCA1-202ENST00000354071 PODXL2Q9NZ53 605 aa3.14□□□□□ -1.91
BRCA1-202ENST00000354071 PLPP6Q8IY26 295 aa3.13□□□□□ -1.91
BRCA1-202ENST00000354071 C1orf115Q9H7X2 142 aa3.13□□□□□ -1.91
BRCA1-202ENST00000354071 HOXB1P14653 301 aaPredicted RBP3.13□□□□□ -1.91
BRCA1-202ENST00000354071 IL27Q8NEV9 243 aa3.13□□□□□ -1.91
BRCA1-202ENST00000354071 ARID3AQ99856 593 aa3.13□□□□□ -1.91
BRCA1-202ENST00000354071 RBM26Q5T8P6 1007 aaKnown RBP3.12□□□□□ -1.91
BRCA1-202ENST00000354071 PLCG2P16885 1265 aa3.12□□□□□ -1.91
BRCA1-202ENST00000354071 TRIM26Q12899 539 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-202ENST00000354071 DDX27Q96GQ7 796 aaKnown RBP3.12□□□□□ -1.91
BRCA1-202ENST00000354071 PCDHGA4Q9Y5G9 962 aa3.12□□□□□ -1.91
BRCA1-202ENST00000354071 ARHGEF1Q92888 912 aaKnown RBP3.11□□□□□ -1.91
BRCA1-202ENST00000354071 ARID3CA6NKF2 412 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 ZMYND10O75800 440 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 BHMG1C9JSJ3 638 aaPredicted RBP3.11□□□□□ -1.91
BRCA1-202ENST00000354071 HRCP23327 699 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 E2F4Q16254 413 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 LARP6Q9BRS8 491 aaKnown RBP3.11□□□□□ -1.91
BRCA1-202ENST00000354071 FAM198AQ9UFP1 575 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 PCDHGA10Q9Y5H3 936 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 PHOX2BQ99453 314 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 ZSWIM6Q9HCJ5 1215 aa3.11□□□□□ -1.91
BRCA1-202ENST00000354071 L3MBTL3Q96JM7 780 aaPredicted RBP3.1□□□□□ -1.91
BRCA1-202ENST00000354071 TMUB1Q9BVT8 246 aa3.1□□□□□ -1.91
BRCA1-202ENST00000354071 SOCS7O14512 581 aa3.1□□□□□ -1.91
BRCA1-202ENST00000354071 FOSBP53539 338 aa3.09□□□□□ -1.91
BRCA1-202ENST00000354071 HRO43593 1189 aa3.09□□□□□ -1.92
BRCA1-202ENST00000354071 DPYSL4O14531 572 aa3.09□□□□□ -1.92
BRCA1-202ENST00000354071 RYDENQ9NUL5 291 aaKnown RBP3.09□□□□□ -1.92
BRCA1-202ENST00000354071 COL9A1P20849 921 aa3.08□□□□□ -1.92
BRCA1-202ENST00000354071 PDE4AP27815 886 aa3.08□□□□□ -1.92
BRCA1-202ENST00000354071 ARSIQ5FYB1 569 aa3.08□□□□□ -1.92
BRCA1-202ENST00000354071 FECHP22830 423 aa3.08□□□□□ -1.92
BRCA1-202ENST00000354071 SLAIN1Q8ND83 568 aa3.08□□□□□ -1.92
BRCA1-202ENST00000354071 SEC24BO95487 1268 aa3.07□□□□□ -1.92
BRCA1-202ENST00000354071 KDM4CQ9H3R0 1056 aa3.07□□□□□ -1.92
BRCA1-202ENST00000354071 FAM117AQ9C073 453 aa3.07□□□□□ -1.92
BRCA1-202ENST00000354071 LHX6Q9UPM6 363 aa3.07□□□□□ -1.92
BRCA1-202ENST00000354071 PTGDRQ13258 359 aa3.07□□□□□ -1.92
BRCA1-202ENST00000354071 BARGINQ6ZT62 677 aa3.07□□□□□ -1.92
BRCA1-202ENST00000354071 CDHR5Q9HBB8 845 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms