RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TSPY4P0CV99 314 aa13.79□□□□□ -0.2
USP4-202ENST00000351842 TSPY10P0CW01 314 aa13.79□□□□□ -0.2
USP4-202ENST00000351842 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.79□□□□□ -0.2
USP4-202ENST00000351842 PLPPR3Q6T4P5 718 aa13.79□□□□□ -0.2
USP4-202ENST00000351842 MAP3K1Q13233 1512 aa13.78□□□□□ -0.2
USP4-202ENST00000351842 TRIM52Q96A61 297 aa13.77□□□□□ -0.21
USP4-202ENST00000351842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.77□□□□□ -0.217e-6■□□□□ 10.8
USP4-202ENST00000351842 FANCAO15360 1455 aa13.74□□□□□ -0.21
USP4-202ENST00000351842 ABCC10Q5T3U5 1492 aa13.73□□□□□ -0.21
USP4-202ENST00000351842 MLECQ14165 292 aa13.73□□□□□ -0.21
USP4-202ENST00000351842 CCER1Q8TC90 406 aaPredicted RBP13.73□□□□□ -0.21
USP4-202ENST00000351842 SCAPERQ9BY12 1400 aa13.73□□□□□ -0.21
USP4-202ENST00000351842 CAMSAP2Q08AD1 1489 aa13.72□□□□□ -0.21
USP4-202ENST00000351842 PLCH2O75038 1416 aa13.71□□□□□ -0.21
USP4-202ENST00000351842 PTPN23Q9H3S7 1636 aa13.71□□□□□ -0.21
USP4-202ENST00000351842 PTPRKQ15262 1439 aa13.71□□□□□ -0.22
USP4-202ENST00000351842 SPAG9O60271 1321 aaKnown RBP13.7□□□□□ -0.22
USP4-202ENST00000351842 RRBP1Q9P2E9 1410 aaKnown RBP13.7□□□□□ -0.22
USP4-202ENST00000351842 SYCP2Q9BX26 1530 aa13.7□□□□□ -0.22
USP4-202ENST00000351842 ADGRL1O94910 1474 aa13.7□□□□□ -0.22
USP4-202ENST00000351842 CDC42BPAQ5VT25 1732 aa13.7□□□□□ -0.22
USP4-202ENST00000351842 TRAPPC8Q9Y2L5 1435 aa13.69□□□□□ -0.22
USP4-202ENST00000351842 ARID4BQ4LE39 1312 aaPredicted RBP13.68□□□□□ -0.22
USP4-202ENST00000351842 AKNAQ7Z591 1439 aa13.68□□□□□ -0.22
USP4-202ENST00000351842 MAPKBP1O60336 1514 aa13.67□□□□□ -0.22
USP4-202ENST00000351842 MYO5CQ9NQX4 1742 aa13.66□□□□□ -0.22
USP4-202ENST00000351842 CDC42BPBQ9Y5S2 1711 aa13.66□□□□□ -0.22
USP4-202ENST00000351842 FOXD1Q16676 465 aa13.66□□□□□ -0.22
USP4-202ENST00000351842 GGT6Q6P531 493 aa13.66□□□□□ -0.22
USP4-202ENST00000351842 DIP2BQ9P265 1576 aa13.66□□□□□ -0.22
USP4-202ENST00000351842 ABCC5O15440 1437 aa13.65□□□□□ -0.22
USP4-202ENST00000351842 MIA2Q96PC5 1412 aa13.65□□□□□ -0.22
USP4-202ENST00000351842 ARHGEF12Q9NZN5 1544 aa13.65□□□□□ -0.22
USP4-202ENST00000351842 DAPK1P53355 1430 aa13.64□□□□□ -0.23
USP4-202ENST00000351842 SAMD9LQ8IVG5 1584 aa13.64□□□□□ -0.23
USP4-202ENST00000351842 KIF3BO15066 747 aa13.62□□□□□ -0.23
USP4-202ENST00000351842 ITSN2Q9NZM3 1697 aa13.62□□□□□ -0.23
USP4-202ENST00000351842 RAB3GAP2Q9H2M9 1393 aa13.62□□□□□ -0.23
USP4-202ENST00000351842 C9orf84Q5VXU9 1444 aa13.62□□□□□ -0.23
USP4-202ENST00000351842 PREX2Q70Z35 1606 aa13.62□□□□□ -0.23
USP4-202ENST00000351842 ABCA9Q8IUA7 1624 aa13.61□□□□□ -0.23
USP4-202ENST00000351842 SENP3Q9H4L4 574 aaPredicted RBP13.61□□□□□ -0.23
USP4-202ENST00000351842 KIF15Q9NS87 1388 aa13.6□□□□□ -0.23
USP4-202ENST00000351842 NEUROD1Q13562 356 aa13.6□□□□□ -0.23
USP4-202ENST00000351842 ANKRD30AQ9BXX3 1397 aa13.59□□□□□ -0.23
USP4-202ENST00000351842 CCDC141Q6ZP82 1450 aa13.58□□□□□ -0.23
USP4-202ENST00000351842 KIF13AQ9H1H9 1805 aa13.58□□□□□ -0.24
USP4-202ENST00000351842 COL17A1Q9UMD9 1497 aaPredicted RBP13.58□□□□□ -0.24
USP4-202ENST00000351842 DENND4BO75064 1496 aaPredicted RBP13.57□□□□□ -0.24
USP4-202ENST00000351842 MBD5Q9P267 1494 aa13.57□□□□□ -0.24
USP4-202ENST00000351842 HRCP23327 699 aa13.56□□□□□ -0.24
USP4-202ENST00000351842 SETD5Q9C0A6 1442 aa13.56□□□□□ -0.24
USP4-202ENST00000351842 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
USP4-202ENST00000351842 YEATS2Q9ULM3 1422 aa13.56□□□□□ -0.24
USP4-202ENST00000351842 TCOF1Q13428 1488 aaKnown RBP13.55□□□□□ -0.24
USP4-202ENST00000351842 RSPH4AQ5TD94 716 aa13.54□□□□□ -0.24
USP4-202ENST00000351842 ABCC1P33527 1531 aa13.54□□□□□ -0.24
USP4-202ENST00000351842 NCOA1Q15788 1441 aa13.54□□□□□ -0.24
USP4-202ENST00000351842 TEX14Q8IWB6 1497 aa13.54□□□□□ -0.24
USP4-202ENST00000351842 NAIPQ13075 1403 aa13.53□□□□□ -0.24
USP4-202ENST00000351842 NUP155O75694 1391 aa13.52□□□□□ -0.24
USP4-202ENST00000351842 ANKRD50Q9ULJ7 1429 aa13.52□□□□□ -0.24
USP4-202ENST00000351842 PLEKHH2Q8IVE3 1493 aa13.52□□□□□ -0.24
USP4-202ENST00000351842 MAP3K4Q9Y6R4 1608 aa13.52□□□□□ -0.24
USP4-202ENST00000351842 SIN3AQ96ST3 1273 aa13.52□□□□□ -0.25
USP4-202ENST00000351842 POGZQ7Z3K3 1410 aa13.51□□□□□ -0.25
USP4-202ENST00000351842 ZNF518AQ6AHZ1 1483 aa13.51□□□□□ -0.25
USP4-202ENST00000351842 DNMT1P26358 1616 aaKnown RBP13.51□□□□□ -0.25
USP4-202ENST00000351842 KIAA1107Q9UPP5 1409 aa13.51□□□□□ -0.25
USP4-202ENST00000351842 ESF1Q9H501 851 aaKnown RBP13.5□□□□□ -0.25
USP4-202ENST00000351842 KDM6BO15054 1643 aa13.5□□□□□ -0.25
USP4-202ENST00000351842 NEO1Q92859 1461 aa13.49□□□□□ -0.25
USP4-202ENST00000351842 GLI2P10070 1586 aa13.48□□□□□ -0.25
USP4-202ENST00000351842 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP4-202ENST00000351842 PKD2Q13563 968 aa13.48□□□□□ -0.25
USP4-202ENST00000351842 HFM1A2PYH4 1435 aa13.48□□□□□ -0.25
USP4-202ENST00000351842 CHGAP10645 457 aaKnown RBP13.47□□□□□ -0.25
USP4-202ENST00000351842 MPHOSPH9Q99550 1183 aa13.47□□□□□ -0.25
USP4-202ENST00000351842 WASHC2CQ9Y4E1 1318 aa13.47□□□□□ -0.25
USP4-202ENST00000351842 PPRC1Q5VV67 1664 aaKnown RBP13.46□□□□□ -0.25
USP4-202ENST00000351842 ATP7AQ04656 1500 aa13.46□□□□□ -0.25
USP4-202ENST00000351842 ZNF326Q5BKZ1 582 aaKnown RBP13.45□□□□□ -0.26
USP4-202ENST00000351842 CEBPAP49715 358 aaPredicted RBP13.44□□□□□ -0.26
USP4-202ENST00000351842 RGL3Q3MIN7 710 aa13.44□□□□□ -0.26
USP4-202ENST00000351842 CFAP65Q6ZU64 1925 aaKnown RBP13.44□□□□□ -0.26
USP4-202ENST00000351842 ZFYVE16Q7Z3T8 1539 aa13.42□□□□□ -0.26
USP4-202ENST00000351842 ARAP3Q8WWN8 1544 aa13.42□□□□□ -0.26
USP4-202ENST00000351842 ARHGEF5Q12774 1597 aa13.42□□□□□ -0.26
USP4-202ENST00000351842 ROCK1Q13464 1354 aa13.41□□□□□ -0.26
USP4-202ENST00000351842 DHX57Q6P158 1386 aaKnown RBP13.41□□□□□ -0.26
USP4-202ENST00000351842 A2MP01023 1474 aa13.41□□□□□ -0.26
USP4-202ENST00000351842 CFAP74Q9C0B2 1584 aa13.41□□□□□ -0.26
USP4-202ENST00000351842 DHX29Q7Z478 1369 aaKnown RBP13.4□□□□□ -0.26
USP4-202ENST00000351842 NUTM2DQ5VT03 806 aaPredicted RBP13.39□□□□□ -0.27
USP4-202ENST00000351842 FBXO31Q5XUX0 539 aaPredicted RBP13.39□□□□□ -0.27
USP4-202ENST00000351842 HECW2Q9P2P5 1572 aa13.39□□□□□ -0.27
USP4-202ENST00000351842 KIDINS220Q9ULH0 1771 aa13.39□□□□□ -0.27
USP4-202ENST00000351842 KDM2AQ9Y2K7 1162 aa13.39□□□□□ -0.27
USP4-202ENST00000351842 CROCC2H7BZ55 1655 aa13.38□□□□□ -0.27
USP4-202ENST00000351842 SHANK2Q9UPX8 1470 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms