RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NISCHQ9Y2I1 1504 aa20.89■□□□□ 0.94
USP4-202ENST00000351842 DCAF8L2P0C7V8 631 aa18.19■□□□□ 0.5
USP4-202ENST00000351842 CCDC180Q9P1Z9 1646 aa18.08■□□□□ 0.49
USP4-202ENST00000351842 ABCC9O60706 1549 aa18■□□□□ 0.47
USP4-202ENST00000351842 SHROOM4Q9ULL8 1493 aa17.51■□□□□ 0.39
USP4-202ENST00000351842 ZCCHC6Q5VYS8 1495 aaKnown RBP17.43■□□□□ 0.38
USP4-202ENST00000351842 PABPN1Q86U42 306 aaKnown RBP eCLIP17.11■□□□□ 0.33
USP4-202ENST00000351842 SCRIBQ14160 1630 aa17.07■□□□□ 0.32
USP4-202ENST00000351842 RB1CC1Q8TDY2 1594 aa17.06■□□□□ 0.32
USP4-202ENST00000351842 NACADO15069 1562 aa17.04■□□□□ 0.32
USP4-202ENST00000351842 DCAF1Q9Y4B6 1507 aa16.97■□□□□ 0.31
USP4-202ENST00000351842 MYO15BQ96JP2 1530 aa16.81■□□□□ 0.28
USP4-202ENST00000351842 SUPT5HO00267 1087 aaKnown RBP16.73■□□□□ 0.27
USP4-202ENST00000351842 UNC13AQ9UPW8 1703 aa16.66■□□□□ 0.26
USP4-202ENST00000351842 BICRAQ9NZM4 1560 aa16.54■□□□□ 0.24
USP4-202ENST00000351842 CECR2Q9BXF3 1484 aa16.48■□□□□ 0.23
USP4-202ENST00000351842 MROH2BQ7Z745 1585 aa16.26■□□□□ 0.19
USP4-202ENST00000351842 DNAJC5BQ9UF47 199 aa16.23■□□□□ 0.19
USP4-202ENST00000351842 RSF1Q96T23 1441 aaPredicted RBP16.21■□□□□ 0.19
USP4-202ENST00000351842 EIF4G1Q04637 1599 aaKnown RBP16.15■□□□□ 0.18
USP4-202ENST00000351842 BAZ1AQ9NRL2 1556 aaPredicted RBP16.13■□□□□ 0.17
USP4-202ENST00000351842 WIZO95785 1651 aa16.12■□□□□ 0.17
USP4-202ENST00000351842 SMARCA4P51532 1647 aa16.11■□□□□ 0.17
USP4-202ENST00000351842 CC2D2AQ9P2K1 1620 aa16.03■□□□□ 0.16
USP4-202ENST00000351842 ATAD2BQ9ULI0 1458 aa15.99■□□□□ 0.15
USP4-202ENST00000351842 BAZ1BQ9UIG0 1483 aaKnown RBP15.97■□□□□ 0.15
USP4-202ENST00000351842 SMARCA2P51531 1590 aa15.87■□□□□ 0.13
USP4-202ENST00000351842 NCAPD3P42695 1498 aa15.8■□□□□ 0.12
USP4-202ENST00000351842 TOP2AP11388 1531 aaKnown RBP15.77■□□□□ 0.12
USP4-202ENST00000351842 CCDC88BA6NC98 1476 aa15.77■□□□□ 0.12
USP4-202ENST00000351842 PEG3Q9GZU2 1588 aa15.7■□□□□ 0.1
USP4-202ENST00000351842 NESP48681 1621 aa15.66■□□□□ 0.1
USP4-202ENST00000351842 HMGXB3Q12766 1538 aa15.66■□□□□ 0.1
USP4-202ENST00000351842 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
USP4-202ENST00000351842 FAM9AQ8IZU1 332 aaPredicted RBP15.57■□□□□ 0.08
USP4-202ENST00000351842 TRIM41Q8WV44 630 aa15.56■□□□□ 0.08
USP4-202ENST00000351842 CHIC1Q5VXU3 224 aa15.54■□□□□ 0.08
USP4-202ENST00000351842 CADPSQ9ULU8 1353 aa15.53■□□□□ 0.08
USP4-202ENST00000351842 ABCC8Q09428 1581 aa15.49■□□□□ 0.07
USP4-202ENST00000351842 ERCC6Q03468 1493 aa15.45■□□□□ 0.06
USP4-202ENST00000351842 CFTRP13569 1480 aa15.41■□□□□ 0.06
USP4-202ENST00000351842 FANCD2Q9BXW9 1451 aa15.39■□□□□ 0.05
USP4-202ENST00000351842 PDS5BQ9NTI5 1447 aa15.34■□□□□ 0.05
USP4-202ENST00000351842 WRNQ14191 1432 aaPredicted RBP eCLIP15.32■□□□□ 0.04
USP4-202ENST00000351842 CEP164Q9UPV0 1460 aa15.3■□□□□ 0.04
USP4-202ENST00000351842 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
USP4-202ENST00000351842 KIF21AQ7Z4S6 1674 aa15.26■□□□□ 0.03
USP4-202ENST00000351842 RANGAP1P46060 587 aaPredicted RBP15.23■□□□□ 0.03
USP4-202ENST00000351842 SYNJ1O43426 1573 aa15.21■□□□□ 0.02
USP4-202ENST00000351842 LOC105371045A0A1W2PR82 267 aa15.2■□□□□ 0.02
USP4-202ENST00000351842 CUX1P39880 1505 aa15.18■□□□□ 0.02
USP4-202ENST00000351842 URB2Q14146 1524 aaKnown RBP15.17■□□□□ 0.02
USP4-202ENST00000351842 RAD54L2Q9Y4B4 1467 aa15.17■□□□□ 0.02
USP4-202ENST00000351842 SOGA1O94964 1423 aa15.15■□□□□ 0.02
USP4-202ENST00000351842 TDRD9Q8NDG6 1382 aaKnown RBP15.14■□□□□ 0.01
USP4-202ENST00000351842 FGD5Q6ZNL6 1462 aa15.13■□□□□ 0.01
USP4-202ENST00000351842 TOPBP1Q92547 1522 aa15.13■□□□□ 0.01
USP4-202ENST00000351842 FBLN2P98095 1184 aa15.13■□□□□ 0.01
USP4-202ENST00000351842 RUSC2Q8N2Y8 1516 aa15.13■□□□□ 0.01
USP4-202ENST00000351842 MRC2Q9UBG0 1479 aa15.12■□□□□ 0.01
USP4-202ENST00000351842 POLA1P09884 1462 aaPredicted RBP15.07■□□□□ 0
USP4-202ENST00000351842 PRDM2Q13029 1718 aa15.07■□□□□ 0
USP4-202ENST00000351842 CUX2O14529 1486 aa15.07■□□□□ 0
USP4-202ENST00000351842 UBTFP17480 764 aaKnown RBP15.05■□□□□ -0
USP4-202ENST00000351842 DNMBPQ6XZF7 1577 aa15.04■□□□□ -0
USP4-202ENST00000351842 AQRO60306 1485 aaKnown RBP eCLIP15.03■□□□□ -09e-7■■■■■ 33
USP4-202ENST00000351842 TOP2BQ02880 1626 aa15.03■□□□□ -0
USP4-202ENST00000351842 CSRNP3Q8WYN3 585 aa15.01□□□□□ -0.01
USP4-202ENST00000351842 ZNF608Q9ULD9 1512 aaPredicted RBP15□□□□□ -0.01
USP4-202ENST00000351842 TTBK1Q5TCY1 1321 aaPredicted RBP14.99□□□□□ -0.01
USP4-202ENST00000351842 THOC2Q8NI27 1593 aaKnown RBP14.97□□□□□ -0.01
USP4-202ENST00000351842 KIF27Q86VH2 1401 aa14.94□□□□□ -0.02
USP4-202ENST00000351842 WDR62O43379 1518 aa14.93□□□□□ -0.02
USP4-202ENST00000351842 BIVM-ERCC5R4GMW8 1640 aa14.93□□□□□ -0.02
USP4-202ENST00000351842 CHMP7Q8WUX9 453 aaPredicted RBP14.89□□□□□ -0.03
USP4-202ENST00000351842 GAPVD1Q14C86 1478 aa14.88□□□□□ -0.03
USP4-202ENST00000351842 IFT140Q96RY7 1462 aa14.86□□□□□ -0.03
USP4-202ENST00000351842 P3H3Q8IVL6 736 aa14.85□□□□□ -0.03
USP4-202ENST00000351842 IGF1RP08069 1367 aa14.85□□□□□ -0.03
USP4-202ENST00000351842 ABCA10Q8WWZ4 1543 aa14.83□□□□□ -0.04
USP4-202ENST00000351842 CARMIL1Q5VZK9 1371 aa14.83□□□□□ -0.04
USP4-202ENST00000351842 TARBP1Q13395 1621 aaKnown RBP14.8□□□□□ -0.04
USP4-202ENST00000351842 RAPGEF2Q9Y4G8 1499 aa14.8□□□□□ -0.04
USP4-202ENST00000351842 SNAPC4Q5SXM2 1469 aa14.78□□□□□ -0.04
USP4-202ENST00000351842 ATP1B4Q9UN42 357 aaPredicted RBP14.77□□□□□ -0.04
USP4-202ENST00000351842 EIF4G3O43432 1585 aaKnown RBP14.77□□□□□ -0.05
USP4-202ENST00000351842 PPARGC1BQ86YN6 1023 aaKnown RBP14.77□□□□□ -0.05
USP4-202ENST00000351842 GRIN2BQ13224 1484 aa14.74□□□□□ -0.05
USP4-202ENST00000351842 ARID3CA6NKF2 412 aa14.73□□□□□ -0.05
USP4-202ENST00000351842 EEA1Q15075 1411 aa14.73□□□□□ -0.05
USP4-202ENST00000351842 GOLGA3Q08378 1498 aa14.68□□□□□ -0.06
USP4-202ENST00000351842 ABCA5Q8WWZ7 1642 aa14.68□□□□□ -0.06
USP4-202ENST00000351842 WDR97A6NE52 1622 aa14.66□□□□□ -0.06
USP4-202ENST00000351842 PBRM1Q86U86 1689 aa14.64□□□□□ -0.07
USP4-202ENST00000351842 PRXQ9BXM0 1461 aa14.64□□□□□ -0.07
USP4-202ENST00000351842 FHAD1B1AJZ9 1412 aa14.63□□□□□ -0.07
USP4-202ENST00000351842 ERICH3Q5RHP9 1530 aa14.61□□□□□ -0.07
USP4-202ENST00000351842 CEP162Q5TB80 1403 aa14.58□□□□□ -0.07
USP4-202ENST00000351842 OSCARQ8IYS5 282 aa14.58□□□□□ -0.07
USP4-202ENST00000351842 SYNJ2O15056 1496 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms