RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 CCDC18Q5T9S5 1454 aa23.43■■□□□ 1.34
HMGN3-202ENST00000344726 SIGLEC1Q9BZZ2 1709 aa23.39■■□□□ 1.34
HMGN3-202ENST00000344726 ADAMTSL3P82987 1691 aa23.39■■□□□ 1.34
HMGN3-202ENST00000344726 POGZQ7Z3K3 1410 aa23.39■■□□□ 1.33
HMGN3-202ENST00000344726 SCAPERQ9BY12 1400 aa23.39■■□□□ 1.33
HMGN3-202ENST00000344726 CDC42BPBQ9Y5S2 1711 aa23.37■■□□□ 1.33
HMGN3-202ENST00000344726 YEATS2Q9ULM3 1422 aa23.37■■□□□ 1.33
HMGN3-202ENST00000344726 BCORL1Q5H9F3 1711 aa23.36■■□□□ 1.33
HMGN3-202ENST00000344726 ARHGAP5Q13017 1502 aa23.35■■□□□ 1.33
HMGN3-202ENST00000344726 ZFYVE16Q7Z3T8 1539 aa23.35■■□□□ 1.33
HMGN3-202ENST00000344726 PREX2Q70Z35 1606 aa23.34■■□□□ 1.33
HMGN3-202ENST00000344726 CEP162Q5TB80 1403 aa23.33■■□□□ 1.32
HMGN3-202ENST00000344726 EFCAB2Q5VUJ9 269 aa23.32■■□□□ 1.32
HMGN3-202ENST00000344726 MADDQ8WXG6 1647 aa23.31■■□□□ 1.32
HMGN3-202ENST00000344726 HECW2Q9P2P5 1572 aa23.31■■□□□ 1.32
HMGN3-202ENST00000344726 CDC42BPAQ5VT25 1732 aa23.3■■□□□ 1.32
HMGN3-202ENST00000344726 MAGI2Q86UL8 1455 aa23.3■■□□□ 1.32
HMGN3-202ENST00000344726 LOC105371045A0A1W2PR82 267 aa23.29■■□□□ 1.32
HMGN3-202ENST00000344726 PTPRMP28827 1452 aa23.28■■□□□ 1.32
HMGN3-202ENST00000344726 KDM5CP41229 1560 aa23.27■■□□□ 1.32
HMGN3-202ENST00000344726 ABCC1P33527 1531 aa23.26■■□□□ 1.31
HMGN3-202ENST00000344726 ARHGEF12Q9NZN5 1544 aa23.26■■□□□ 1.31
HMGN3-202ENST00000344726 ARID4BQ4LE39 1312 aaPredicted RBP23.26■■□□□ 1.31
HMGN3-202ENST00000344726 ZNF518AQ6AHZ1 1483 aa23.24■■□□□ 1.31
HMGN3-202ENST00000344726 ITSN2Q9NZM3 1697 aa23.23■■□□□ 1.31
HMGN3-202ENST00000344726 RIMS1Q86UR5 1692 aaKnown RBP23.22■■□□□ 1.31
HMGN3-202ENST00000344726 AFAP1Q8N556 730 aa23.22■■□□□ 1.31
HMGN3-202ENST00000344726 TRAPPC8Q9Y2L5 1435 aa23.2■■□□□ 1.3
HMGN3-202ENST00000344726 SAMD9LQ8IVG5 1584 aa23.19■■□□□ 1.3
HMGN3-202ENST00000344726 GPATCH8Q9UKJ3 1502 aaKnown RBP23.19■■□□□ 1.3
HMGN3-202ENST00000344726 ATP10AO60312 1499 aa23.19■■□□□ 1.3
HMGN3-202ENST00000344726 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
HMGN3-202ENST00000344726 C9orf84Q5VXU9 1444 aa23.17■■□□□ 1.3
HMGN3-202ENST00000344726 ABCA6Q8N139 1617 aa23.17■■□□□ 1.3
HMGN3-202ENST00000344726 MLH3Q9UHC1 1453 aa23.14■■□□□ 1.29
HMGN3-202ENST00000344726 MTUS2Q5JR59 1369 aa23.13■■□□□ 1.29
HMGN3-202ENST00000344726 EHBP1L1Q8N3D4 1523 aa23.13■■□□□ 1.29
HMGN3-202ENST00000344726 SYCP2Q9BX26 1530 aa23.13■■□□□ 1.29
HMGN3-202ENST00000344726 FER1L4A9Z1Z3 1794 aa23.12■■□□□ 1.29
HMGN3-202ENST00000344726 TIAM1Q13009 1591 aa23.12■■□□□ 1.29
HMGN3-202ENST00000344726 MLECQ14165 292 aa23.11■■□□□ 1.29
HMGN3-202ENST00000344726 KIDINS220Q9ULH0 1771 aa23.11■■□□□ 1.29
HMGN3-202ENST00000344726 REREQ9P2R6 1566 aa23.1■■□□□ 1.29
HMGN3-202ENST00000344726 ZNF777Q9ULD5 760 aaPredicted RBP23.09■■□□□ 1.29
HMGN3-202ENST00000344726 CCNB3Q8WWL7 1395 aa23.08■■□□□ 1.29
HMGN3-202ENST00000344726 VPS8Q8N3P4 1428 aa23.06■■□□□ 1.28
HMGN3-202ENST00000344726 LMTK3Q96Q04 1460 aa23.05■■□□□ 1.28
HMGN3-202ENST00000344726 CFDP1Q9UEE9 299 aaPredicted RBP23.04■■□□□ 1.28
HMGN3-202ENST00000344726 HNRNPMP52272 730 aaKnown RBP eCLIP23.03■■□□□ 1.28
HMGN3-202ENST00000344726 MYT1LQ9UL68 1186 aa23.03■■□□□ 1.28
HMGN3-202ENST00000344726 KIAA1107Q9UPP5 1409 aa23.02■■□□□ 1.28
HMGN3-202ENST00000344726 AGLP35573 1532 aa23.01■■□□□ 1.27
HMGN3-202ENST00000344726 ZNF644Q9H582 1327 aaPredicted RBP23.01■■□□□ 1.27
HMGN3-202ENST00000344726 INO80Q9ULG1 1556 aaPredicted RBP23.01■■□□□ 1.27
HMGN3-202ENST00000344726 NCOA2Q15596 1464 aa22.99■■□□□ 1.27
HMGN3-202ENST00000344726 PLEKHH2Q8IVE3 1493 aa22.99■■□□□ 1.27
HMGN3-202ENST00000344726 SUPT6HQ7KZ85 1726 aaKnown RBP22.99■■□□□ 1.27
HMGN3-202ENST00000344726 ATP7AQ04656 1500 aa22.98■■□□□ 1.27
HMGN3-202ENST00000344726 MBD5Q9P267 1494 aa22.97■■□□□ 1.27
HMGN3-202ENST00000344726 SPAG9O60271 1321 aaKnown RBP22.95■■□□□ 1.26
HMGN3-202ENST00000344726 LRRC9Q6ZRR7 1453 aa22.93■■□□□ 1.26
HMGN3-202ENST00000344726 CEBPAP49715 358 aaPredicted RBP22.93■■□□□ 1.26
HMGN3-202ENST00000344726 PLXNC1O60486 1568 aa22.93■■□□□ 1.26
HMGN3-202ENST00000344726 C3P01024 1663 aa22.9■■□□□ 1.26
HMGN3-202ENST00000344726 CAMSAP2Q08AD1 1489 aa22.9■■□□□ 1.26
HMGN3-202ENST00000344726 MAP3K1Q13233 1512 aa22.89■■□□□ 1.26
HMGN3-202ENST00000344726 HSPA2P54652 639 aa22.89■■□□□ 1.25
HMGN3-202ENST00000344726 KANK4Q5T7N3 995 aaPredicted RBP22.88■■□□□ 1.25
HMGN3-202ENST00000344726 PREX1Q8TCU6 1659 aa22.87■■□□□ 1.25
HMGN3-202ENST00000344726 A2MP01023 1474 aa22.87■■□□□ 1.25
HMGN3-202ENST00000344726 ADGBQ8N7X0 1667 aa22.85■■□□□ 1.25
HMGN3-202ENST00000344726 CCDC141Q6ZP82 1450 aa22.83■■□□□ 1.25
HMGN3-202ENST00000344726 RTEL1-TNFRSF6BF6WH68 1400 aa22.81■■□□□ 1.24
HMGN3-202ENST00000344726 ARHGEF5Q12774 1597 aa22.8■■□□□ 1.24
HMGN3-202ENST00000344726 MROH2AA6NES4 1674 aa22.79■■□□□ 1.24
HMGN3-202ENST00000344726 ILDR1Q86SU0 546 aaPredicted RBP22.79■■□□□ 1.24
HMGN3-202ENST00000344726 CLTCQ00610 1675 aaKnown RBP22.78■■□□□ 1.24
HMGN3-202ENST00000344726 CNTLNQ9NXG0 1405 aa22.78■■□□□ 1.24
HMGN3-202ENST00000344726 MYOM3Q5VTT5 1437 aa22.74■■□□□ 1.23
HMGN3-202ENST00000344726 UHRF1BP1Q6BDS2 1440 aa22.74■■□□□ 1.23
HMGN3-202ENST00000344726 ESF1Q9H501 851 aaKnown RBP22.74■■□□□ 1.23
HMGN3-202ENST00000344726 DHX29Q7Z478 1369 aaKnown RBP22.73■■□□□ 1.23
HMGN3-202ENST00000344726 SETD1BQ9UPS6 1966 aaKnown RBP22.72■■□□□ 1.23
HMGN3-202ENST00000344726 STRCQ7RTU9 1775 aa22.72■■□□□ 1.23
HMGN3-202ENST00000344726 ZMYM3Q14202 1370 aa22.72■■□□□ 1.23
HMGN3-202ENST00000344726 GGT6Q6P531 493 aa22.71■■□□□ 1.23
HMGN3-202ENST00000344726 MIA2Q96PC5 1412 aa22.7■■□□□ 1.22
HMGN3-202ENST00000344726 MAST1Q9Y2H9 1570 aa22.69■■□□□ 1.22
HMGN3-202ENST00000344726 RSPH4AQ5TD94 716 aa22.68■■□□□ 1.22
HMGN3-202ENST00000344726 NPATQ14207 1427 aa22.67■■□□□ 1.22
HMGN3-202ENST00000344726 APLP2Q06481 763 aa22.67■■□□□ 1.22
HMGN3-202ENST00000344726 PTPRKQ15262 1439 aa22.65■■□□□ 1.22
HMGN3-202ENST00000344726 MYO3AQ8NEV4 1616 aa22.64■■□□□ 1.21
HMGN3-202ENST00000344726 PTPN23Q9H3S7 1636 aa22.62■■□□□ 1.21
HMGN3-202ENST00000344726 KIF3BO15066 747 aa22.62■■□□□ 1.21
HMGN3-202ENST00000344726 TSPY4P0CV99 314 aa22.61■■□□□ 1.21
HMGN3-202ENST00000344726 TSPY10P0CW01 314 aa22.61■■□□□ 1.21
HMGN3-202ENST00000344726 CROCC2H7BZ55 1655 aa22.61■■□□□ 1.21
HMGN3-202ENST00000344726 PPP6R1Q9UPN7 881 aa22.6■■□□□ 1.21
HMGN3-202ENST00000344726 ZNF142P52746 1687 aaPredicted RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms