RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 CDC42BPBQ9Y5S2 1711 aa30.32■■■□□ 2.44
SYNE4-202ENST00000340477 RICTORQ6R327 1708 aa30.29■■■□□ 2.44
SYNE4-202ENST00000340477 FRMPD1Q5SYB0 1578 aa30.28■■■□□ 2.44
SYNE4-202ENST00000340477 RAPGEF3O95398 923 aa30.27■■■□□ 2.44
SYNE4-202ENST00000340477 SUPT6HQ7KZ85 1726 aaKnown RBP30.26■■■□□ 2.43
SYNE4-202ENST00000340477 MAP3K1Q13233 1512 aa30.25■■■□□ 2.43
SYNE4-202ENST00000340477 CCNB3Q8WWL7 1395 aa30.25■■■□□ 2.43
SYNE4-202ENST00000340477 SCAPERQ9BY12 1400 aa30.24■■■□□ 2.43
SYNE4-202ENST00000340477 APLP2Q06481 763 aa30.24■■■□□ 2.43
SYNE4-202ENST00000340477 ITSN2Q9NZM3 1697 aa30.23■■■□□ 2.43
SYNE4-202ENST00000340477 POGZQ7Z3K3 1410 aa30.22■■■□□ 2.43
SYNE4-202ENST00000340477 GPATCH8Q9UKJ3 1502 aaKnown RBP30.2■■■□□ 2.42
SYNE4-202ENST00000340477 ZMYM4Q5VZL5 1548 aa30.19■■■□□ 2.42
SYNE4-202ENST00000340477 LRRC9Q6ZRR7 1453 aa30.19■■■□□ 2.42
SYNE4-202ENST00000340477 ABCC1P33527 1531 aa30.17■■■□□ 2.42
SYNE4-202ENST00000340477 ZNF518AQ6AHZ1 1483 aa30.16■■■□□ 2.42
SYNE4-202ENST00000340477 ARHGEF40Q8TER5 1519 aa30.16■■■□□ 2.42
SYNE4-202ENST00000340477 NCOA2Q15596 1464 aa30.14■■■□□ 2.42
SYNE4-202ENST00000340477 CFDP1Q9UEE9 299 aaPredicted RBP30.14■■■□□ 2.42
SYNE4-202ENST00000340477 MAGI2Q86UL8 1455 aa30.13■■■□□ 2.41
SYNE4-202ENST00000340477 ZNF777Q9ULD5 760 aaPredicted RBP30.12■■■□□ 2.41
SYNE4-202ENST00000340477 ZFYVE16Q7Z3T8 1539 aa30.12■■■□□ 2.41
SYNE4-202ENST00000340477 PLEKHH2Q8IVE3 1493 aa30.11■■■□□ 2.41
SYNE4-202ENST00000340477 SAMD9LQ8IVG5 1584 aa30.11■■■□□ 2.41
SYNE4-202ENST00000340477 AEBP2Q6ZN18 517 aaPredicted RBP30.1■■■□□ 2.41
SYNE4-202ENST00000340477 KDM5CP41229 1560 aa30.07■■■□□ 2.4
SYNE4-202ENST00000340477 HECW2Q9P2P5 1572 aa30.05■■■□□ 2.4
SYNE4-202ENST00000340477 SYCP2Q9BX26 1530 aa30.05■■■□□ 2.4
SYNE4-202ENST00000340477 MYT1LQ9UL68 1186 aa30.03■■■□□ 2.4
SYNE4-202ENST00000340477 ARHGEF12Q9NZN5 1544 aa30.01■■■□□ 2.4
SYNE4-202ENST00000340477 KANK4Q5T7N3 995 aaPredicted RBP30.01■■■□□ 2.39
SYNE4-202ENST00000340477 KIAA1107Q9UPP5 1409 aa30■■■□□ 2.39
SYNE4-202ENST00000340477 AFAP1Q8N556 730 aa30■■■□□ 2.39
SYNE4-202ENST00000340477 YEATS2Q9ULM3 1422 aa29.99■■■□□ 2.39
SYNE4-202ENST00000340477 TRAPPC8Q9Y2L5 1435 aa29.99■■■□□ 2.39
SYNE4-202ENST00000340477 ARID4BQ4LE39 1312 aaPredicted RBP29.97■■■□□ 2.39
SYNE4-202ENST00000340477 MLH3Q9UHC1 1453 aa29.95■■■□□ 2.39
SYNE4-202ENST00000340477 KDM4FA0A1W2PPD8 638 aa29.95■■■□□ 2.39
SYNE4-202ENST00000340477 ATP10AO60312 1499 aa29.93■■■□□ 2.38
SYNE4-202ENST00000340477 CAMSAP2Q08AD1 1489 aa29.93■■■□□ 2.38
SYNE4-202ENST00000340477 HNRNPMP52272 730 aaKnown RBP eCLIP29.92■■■□□ 2.38
SYNE4-202ENST00000340477 C9orf84Q5VXU9 1444 aa29.92■■■□□ 2.38
SYNE4-202ENST00000340477 MYOM3Q5VTT5 1437 aa29.91■■■□□ 2.38
SYNE4-202ENST00000340477 DIP2CQ9Y2E4 1556 aa29.9■■■□□ 2.38
SYNE4-202ENST00000340477 BCORL1Q5H9F3 1711 aa29.89■■■□□ 2.38
SYNE4-202ENST00000340477 ABCA6Q8N139 1617 aa29.89■■■□□ 2.37
SYNE4-202ENST00000340477 SPAG9O60271 1321 aaKnown RBP29.88■■■□□ 2.37
SYNE4-202ENST00000340477 KIDINS220Q9ULH0 1771 aa29.87■■■□□ 2.37
SYNE4-202ENST00000340477 ZNF644Q9H582 1327 aaPredicted RBP29.87■■■□□ 2.37
SYNE4-202ENST00000340477 MIA2Q96PC5 1412 aa29.86■■■□□ 2.37
SYNE4-202ENST00000340477 ATP7AQ04656 1500 aa29.86■■■□□ 2.37
SYNE4-202ENST00000340477 REREQ9P2R6 1566 aa29.84■■■□□ 2.37
SYNE4-202ENST00000340477 INO80Q9ULG1 1556 aaPredicted RBP29.84■■■□□ 2.37
SYNE4-202ENST00000340477 CCDC141Q6ZP82 1450 aa29.83■■■□□ 2.37
SYNE4-202ENST00000340477 ADAMTSL3P82987 1691 aa29.82■■■□□ 2.36
SYNE4-202ENST00000340477 MBD5Q9P267 1494 aa29.82■■■□□ 2.36
SYNE4-202ENST00000340477 RSPH4AQ5TD94 716 aa29.81■■■□□ 2.36
SYNE4-202ENST00000340477 SIGLEC1Q9BZZ2 1709 aa29.81■■■□□ 2.36
SYNE4-202ENST00000340477 ARHGEF5Q12774 1597 aa29.81■■■□□ 2.36
SYNE4-202ENST00000340477 MADDQ8WXG6 1647 aa29.76■■■□□ 2.35
SYNE4-202ENST00000340477 PTPN23Q9H3S7 1636 aa29.75■■■□□ 2.35
SYNE4-202ENST00000340477 ADGBQ8N7X0 1667 aa29.75■■■□□ 2.35
SYNE4-202ENST00000340477 RTEL1-TNFRSF6BF6WH68 1400 aa29.73■■■□□ 2.35
SYNE4-202ENST00000340477 FER1L4A9Z1Z3 1794 aa29.72■■■□□ 2.35
SYNE4-202ENST00000340477 FGD6Q6ZV73 1430 aa29.72■■■□□ 2.35
SYNE4-202ENST00000340477 MLECQ14165 292 aa29.72■■■□□ 2.35
SYNE4-202ENST00000340477 AGLP35573 1532 aa29.71■■■□□ 2.35
SYNE4-202ENST00000340477 RIMS1Q86UR5 1692 aaKnown RBP29.71■■■□□ 2.35
SYNE4-202ENST00000340477 TSPY4P0CV99 314 aa29.7■■■□□ 2.35
SYNE4-202ENST00000340477 TSPY10P0CW01 314 aa29.7■■■□□ 2.35
SYNE4-202ENST00000340477 A2MP01023 1474 aa29.68■■■□□ 2.34
SYNE4-202ENST00000340477 PTPRMP28827 1452 aa29.66■■■□□ 2.34
SYNE4-202ENST00000340477 PLXNC1O60486 1568 aa29.64■■■□□ 2.34
SYNE4-202ENST00000340477 MAST1Q9Y2H9 1570 aa29.64■■■□□ 2.34
SYNE4-202ENST00000340477 TCOF1Q13428 1488 aaKnown RBP29.64■■■□□ 2.34
SYNE4-202ENST00000340477 CROCC2H7BZ55 1655 aa29.63■■■□□ 2.33
SYNE4-202ENST00000340477 DNMT1P26358 1616 aaKnown RBP29.6■■■□□ 2.33
SYNE4-202ENST00000340477 ESF1Q9H501 851 aaKnown RBP29.59■■■□□ 2.33
SYNE4-202ENST00000340477 SHANK2Q9UPX8 1470 aa29.58■■■□□ 2.33
SYNE4-202ENST00000340477 DHX29Q7Z478 1369 aaKnown RBP29.54■■■□□ 2.32
SYNE4-202ENST00000340477 DAPK1P53355 1430 aa29.54■■■□□ 2.32
SYNE4-202ENST00000340477 FAM50AQ14320 339 aaKnown RBP29.53■■■□□ 2.32
SYNE4-202ENST00000340477 PPARGC1BQ86YN6 1023 aaKnown RBP29.52■■■□□ 2.32
SYNE4-202ENST00000340477 ABCC5O15440 1437 aa29.52■■■□□ 2.32
SYNE4-202ENST00000340477 CNTLNQ9NXG0 1405 aa29.5■■■□□ 2.31
SYNE4-202ENST00000340477 PLPPR3Q6T4P5 718 aa29.48■■■□□ 2.31
SYNE4-202ENST00000340477 DUOX2Q9NRD8 1548 aa29.45■■■□□ 2.3
SYNE4-202ENST00000340477 MROH2AA6NES4 1674 aa29.44■■■□□ 2.3
SYNE4-202ENST00000340477 GGT6Q6P531 493 aa29.44■■■□□ 2.3
SYNE4-202ENST00000340477 EIF2AK4Q9P2K8 1649 aaKnown RBP29.44■■■□□ 2.3
SYNE4-202ENST00000340477 KIF3BO15066 747 aa29.42■■■□□ 2.3
SYNE4-202ENST00000340477 ANKRD30AQ9BXX3 1397 aa29.41■■■□□ 2.3
SYNE4-202ENST00000340477 KIF15Q9NS87 1388 aa29.41■■■□□ 2.3
SYNE4-202ENST00000340477 CLTCQ00610 1675 aaKnown RBP29.41■■■□□ 2.3
SYNE4-202ENST00000340477 PPP6R1Q9UPN7 881 aa29.41■■■□□ 2.3
SYNE4-202ENST00000340477 C3P01024 1663 aa29.4■■■□□ 2.3
SYNE4-202ENST00000340477 FAM135AQ9P2D6 1515 aa29.39■■■□□ 2.3
SYNE4-202ENST00000340477 RNF17Q9BXT8 1623 aaKnown RBP29.36■■■□□ 2.29
SYNE4-202ENST00000340477 CHIC2Q9UKJ5 165 aa29.36■■■□□ 2.29
SYNE4-202ENST00000340477 ERBINQ96RT1 1412 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms