RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ZBED9Q6R2W3 1325 aa13.13□□□□□ -0.31
CCDC88A-202ENST00000336838 GBP4Q96PP9 640 aa13.13□□□□□ -0.31
CCDC88A-202ENST00000336838 SUPT6HQ7KZ85 1726 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-202ENST00000336838 DHX57Q6P158 1386 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-202ENST00000336838 SIN3AQ96ST3 1273 aa13.12□□□□□ -0.31
CCDC88A-202ENST00000336838 ATAD2BQ9ULI0 1458 aa13.12□□□□□ -0.31
CCDC88A-202ENST00000336838 PPP1R15AO75807 674 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-202ENST00000336838 HSP90AB1P08238 724 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-202ENST00000336838 CDK11BP21127 795 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-202ENST00000336838 IPO9Q96P70 1041 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-202ENST00000336838 DEKP35659 375 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-202ENST00000336838 RCAN3Q9UKA8 241 aa13.1□□□□□ -0.31
CCDC88A-202ENST00000336838 FYCO1Q9BQS8 1478 aa13.1□□□□□ -0.31
CCDC88A-202ENST00000336838 TOP2BQ02880 1626 aa13.1□□□□□ -0.31
CCDC88A-202ENST00000336838 MSNP26038 577 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-202ENST00000336838 FANCIQ9NVI1 1328 aa13.09□□□□□ -0.31
CCDC88A-202ENST00000336838 HSPA5P11021 654 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-202ENST00000336838 NLRP13Q86W25 1043 aa13.09□□□□□ -0.31
CCDC88A-202ENST00000336838 PMFBP1Q8TBY8 1022 aa13.08□□□□□ -0.31
CCDC88A-202ENST00000336838 SYAP1Q96A49 352 aaPredicted RBP13.08□□□□□ -0.31
CCDC88A-202ENST00000336838 PRDM2Q13029 1718 aa13.08□□□□□ -0.32
CCDC88A-202ENST00000336838 NAP1L5Q96NT1 182 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-202ENST00000336838 DNTTIP2Q5QJE6 756 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-202ENST00000336838 B4GALNT3Q6L9W6 998 aa13.08□□□□□ -0.32
CCDC88A-202ENST00000336838 AAMPQ13685 434 aa13.07□□□□□ -0.32
CCDC88A-202ENST00000336838 RWDD1Q9H446 243 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-202ENST00000336838 HDGFP51858 240 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-202ENST00000336838 CADPSQ9ULU8 1353 aa13.06□□□□□ -0.32
CCDC88A-202ENST00000336838 DCAF11Q8TEB1 546 aa13.06□□□□□ -0.32
CCDC88A-202ENST00000336838 MPHOSPH9Q99550 1183 aa13.06□□□□□ -0.32
CCDC88A-202ENST00000336838 ARXQ96QS3 562 aa13.04□□□□□ -0.32
CCDC88A-202ENST00000336838 RGS3P49796 1198 aa13.04□□□□□ -0.32
CCDC88A-202ENST00000336838 LAS1LQ9Y4W2 734 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-202ENST00000336838 RGL3Q3MIN7 710 aa13.04□□□□□ -0.32
CCDC88A-202ENST00000336838 MYBBP1AQ9BQG0 1328 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-202ENST00000336838 TSHZ2Q9NRE2 1034 aa13.02□□□□□ -0.32
CCDC88A-202ENST00000336838 HDAC5Q9UQL6 1122 aa13.02□□□□□ -0.32
CCDC88A-202ENST00000336838 STAC3Q96MF2 364 aa13.02□□□□□ -0.33
CCDC88A-202ENST00000336838 HECW1Q76N89 1606 aa13.02□□□□□ -0.33
CCDC88A-202ENST00000336838 CUL7Q14999 1698 aa13.02□□□□□ -0.33
CCDC88A-202ENST00000336838 NUP155O75694 1391 aa13.02□□□□□ -0.33
CCDC88A-202ENST00000336838 EHBP1L1Q8N3D4 1523 aa13.01□□□□□ -0.33
CCDC88A-202ENST00000336838 PHF14O94880 888 aa13.01□□□□□ -0.33
CCDC88A-202ENST00000336838 KANK4Q5T7N3 995 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-202ENST00000336838 MIA2Q96PC5 1412 aa13.01□□□□□ -0.33
CCDC88A-202ENST00000336838 RRBP1Q9P2E9 1410 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-202ENST00000336838 MYOM3Q5VTT5 1437 aa13.01□□□□□ -0.33
CCDC88A-202ENST00000336838 LRRC9Q6ZRR7 1453 aa13.01□□□□□ -0.33
CCDC88A-202ENST00000336838 HTATSF1O43719 755 aaKnown RBP13□□□□□ -0.33
CCDC88A-202ENST00000336838 HMGXB3Q12766 1538 aa13□□□□□ -0.33
CCDC88A-202ENST00000336838 CCDC144AA2RUR9 1427 aa13□□□□□ -0.33
CCDC88A-202ENST00000336838 DDX11L8A8MPP1 907 aa13□□□□□ -0.33
CCDC88A-202ENST00000336838 CSPP1Q1MSJ5 1256 aa12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 CENPQQ7L2Z9 268 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 CASKIN1Q8WXD9 1431 aa12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 PKD2Q13563 968 aa12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 RSPH6AQ9H0K4 717 aa12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 POGKQ9P215 609 aa12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 MORC1Q86VD1 984 aa12.99□□□□□ -0.33
CCDC88A-202ENST00000336838 CC2D1BQ5T0F9 858 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-202ENST00000336838 FGD6Q6ZV73 1430 aa12.98□□□□□ -0.33
CCDC88A-202ENST00000336838 FHOD3Q2V2M9 1422 aa12.98□□□□□ -0.33
CCDC88A-202ENST00000336838 SCAPERQ9BY12 1400 aa12.98□□□□□ -0.33
CCDC88A-202ENST00000336838 KIAA2012Q0VF49 1180 aa12.98□□□□□ -0.33
CCDC88A-202ENST00000336838 TIAM1Q13009 1591 aa12.97□□□□□ -0.33
CCDC88A-202ENST00000336838 MAP3K1Q13233 1512 aa12.96□□□□□ -0.33
CCDC88A-202ENST00000336838 GOLGA6L4A6NEF3 574 aa12.96□□□□□ -0.33
CCDC88A-202ENST00000336838 CNTLNQ9NXG0 1405 aa12.96□□□□□ -0.33
CCDC88A-202ENST00000336838 SKOR2Q2VWA4 1001 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-202ENST00000336838 GOLGA2Q08379 1002 aa12.96□□□□□ -0.34
CCDC88A-202ENST00000336838 LMOD3Q0VAK6 560 aa12.95□□□□□ -0.34
CCDC88A-202ENST00000336838 FANCD2Q9BXW9 1451 aa12.95□□□□□ -0.34
CCDC88A-202ENST00000336838 CGNL1Q0VF96 1302 aa12.95□□□□□ -0.34
CCDC88A-202ENST00000336838 SYNJ1O43426 1573 aa12.94□□□□□ -0.34
CCDC88A-202ENST00000336838 USP47Q96K76 1375 aa12.94□□□□□ -0.34
CCDC88A-202ENST00000336838 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.94□□□□□ -0.346e-7■■□□□ 12.4
CCDC88A-202ENST00000336838 GOLGA6L3A6NEY3 463 aa12.94□□□□□ -0.34
CCDC88A-202ENST00000336838 KCNH8Q96L42 1107 aa12.94□□□□□ -0.34
CCDC88A-202ENST00000336838 HDGFL2Q7Z4V5 671 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-202ENST00000336838 CHMP4CQ96CF2 233 aa12.93□□□□□ -0.34
CCDC88A-202ENST00000336838 HMMRO75330 724 aa12.93□□□□□ -0.34
CCDC88A-202ENST00000336838 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
CCDC88A-202ENST00000336838 KIAA1211Q6ZU35 1233 aa12.91□□□□□ -0.34
CCDC88A-202ENST00000336838 CENPJQ9HC77 1338 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-202ENST00000336838 CC2D2AQ9P2K1 1620 aa12.91□□□□□ -0.34
CCDC88A-202ENST00000336838 TERF2IPQ9NYB0 399 aa12.91□□□□□ -0.34
CCDC88A-202ENST00000336838 FAM161AQ3B820 660 aa12.9□□□□□ -0.34
CCDC88A-202ENST00000336838 CCDC34Q96HJ3 373 aa12.9□□□□□ -0.34
CCDC88A-202ENST00000336838 GPATCH3Q96I76 525 aa12.9□□□□□ -0.34
CCDC88A-202ENST00000336838 EFCAB2Q5VUJ9 269 aa12.9□□□□□ -0.34
CCDC88A-202ENST00000336838 KCNJ4P48050 445 aa12.9□□□□□ -0.34
CCDC88A-202ENST00000336838 L3MBTL2Q969R5 705 aa12.9□□□□□ -0.34
CCDC88A-202ENST00000336838 GAPVD1Q14C86 1478 aa12.9□□□□□ -0.34
CCDC88A-202ENST00000336838 PRKRIP1Q9H875 184 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-202ENST00000336838 NINLQ9Y2I6 1382 aa12.89□□□□□ -0.35
CCDC88A-202ENST00000336838 FGD1P98174 961 aa12.89□□□□□ -0.35
CCDC88A-202ENST00000336838 E9PSI1 815 aa12.89□□□□□ -0.35
CCDC88A-202ENST00000336838 OS9Q13438 667 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-202ENST00000336838 WASHC2AQ641Q2 1341 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms