RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 PDE4CQ08493 712 aa9.2□□□□□ -0.94
ZNF540-201ENST00000316433 PABPN1Q86U42 306 aaKnown RBP eCLIP9.2□□□□□ -0.94
ZNF540-201ENST00000316433 NAIPQ13075 1403 aa9.2□□□□□ -0.94
ZNF540-201ENST00000316433 RSPH6AQ9H0K4 717 aa9.19□□□□□ -0.94
ZNF540-201ENST00000316433 MBD5Q9P267 1494 aa9.19□□□□□ -0.94
ZNF540-201ENST00000316433 C11orf95C9JLR9 678 aaPredicted RBP9.18□□□□□ -0.94
ZNF540-201ENST00000316433 PPP1R15AO75807 674 aaPredicted RBP9.18□□□□□ -0.94
ZNF540-201ENST00000316433 FGD1P98174 961 aa9.18□□□□□ -0.94
ZNF540-201ENST00000316433 DENND4BO75064 1496 aaPredicted RBP9.18□□□□□ -0.94
ZNF540-201ENST00000316433 SHANK2Q9UPX8 1470 aa9.18□□□□□ -0.94
ZNF540-201ENST00000316433 KIAA0556O60303 1618 aa9.17□□□□□ -0.94
ZNF540-201ENST00000316433 GAPVD1Q14C86 1478 aa9.16□□□□□ -0.94
ZNF540-201ENST00000316433 A0A0U1RQG5 324 aaPredicted RBP9.16□□□□□ -0.94
ZNF540-201ENST00000316433 E9PCH4 1651 aa9.16□□□□□ -0.94
ZNF540-201ENST00000316433 MAGI3Q5TCQ9 1506 aa9.16□□□□□ -0.94
ZNF540-201ENST00000316433 PDS5BQ9NTI5 1447 aa9.16□□□□□ -0.94
ZNF540-201ENST00000316433 PDIA4P13667 645 aaKnown RBP9.16□□□□□ -0.94
ZNF540-201ENST00000316433 KIF14Q15058 1648 aa9.16□□□□□ -0.94
ZNF540-201ENST00000316433 TEX14Q8IWB6 1497 aa9.16□□□□□ -0.94
ZNF540-201ENST00000316433 ARHGEF12Q9NZN5 1544 aa9.15□□□□□ -0.94
ZNF540-201ENST00000316433 INSRP06213 1382 aa9.14□□□□□ -0.95
ZNF540-201ENST00000316433 AAMPQ13685 434 aa9.14□□□□□ -0.95
ZNF540-201ENST00000316433 PAK3O75914 559 aaPredicted RBP9.14□□□□□ -0.95
ZNF540-201ENST00000316433 RAPGEF6Q8TEU7 1601 aa9.13□□□□□ -0.95
ZNF540-201ENST00000316433 EPRSP07814 1512 aaKnown RBP9.13□□□□□ -0.95
ZNF540-201ENST00000316433 ARHGEF5Q12774 1597 aa9.12□□□□□ -0.95
ZNF540-201ENST00000316433 RBM10P98175 930 aaKnown RBP9.12□□□□□ -0.95
ZNF540-201ENST00000316433 MAST1Q9Y2H9 1570 aa9.12□□□□□ -0.95
ZNF540-201ENST00000316433 RPRD2Q5VT52 1461 aaKnown RBP9.11□□□□□ -0.95
ZNF540-201ENST00000316433 WASHC2AQ641Q2 1341 aa9.11□□□□□ -0.95
ZNF540-201ENST00000316433 PTPRKQ15262 1439 aa9.11□□□□□ -0.95
ZNF540-201ENST00000316433 NEURL4Q96JN8 1562 aa9.11□□□□□ -0.95
ZNF540-201ENST00000316433 FHOD3Q2V2M9 1422 aa9.1□□□□□ -0.95
ZNF540-201ENST00000316433 IFT140Q96RY7 1462 aa9.1□□□□□ -0.95
ZNF540-201ENST00000316433 HNRNPUL2Q1KMD3 747 aaKnown RBP9.1□□□□□ -0.95
ZNF540-201ENST00000316433 WASHC2CQ9Y4E1 1318 aa9.1□□□□□ -0.95
ZNF540-201ENST00000316433 ARID4BQ4LE39 1312 aaPredicted RBP9.1□□□□□ -0.95
ZNF540-201ENST00000316433 NCOA1Q15788 1441 aa9.1□□□□□ -0.95
ZNF540-201ENST00000316433 UHRF1BP1Q6BDS2 1440 aa9.1□□□□□ -0.95
ZNF540-201ENST00000316433 SPATA31E1Q6ZUB1 1445 aa9.1□□□□□ -0.95
ZNF540-201ENST00000316433 MRC2Q9UBG0 1479 aa9.1□□□□□ -0.95
ZNF540-201ENST00000316433 KIAA0586Q9BVV6 1533 aa9.09□□□□□ -0.95
ZNF540-201ENST00000316433 RAD54L2Q9Y4B4 1467 aa9.09□□□□□ -0.95
ZNF540-201ENST00000316433 ARXQ96QS3 562 aa9.08□□□□□ -0.96
ZNF540-201ENST00000316433 BCL11BQ9C0K0 894 aaPredicted RBP9.08□□□□□ -0.96
ZNF540-201ENST00000316433 BRPF3Q9ULD4 1205 aa9.07□□□□□ -0.96
ZNF540-201ENST00000316433 KCNH8Q96L42 1107 aa9.07□□□□□ -0.96
ZNF540-201ENST00000316433 SENP3Q9H4L4 574 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-201ENST00000316433 MAGI1Q96QZ7 1491 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-201ENST00000316433 CEP170Q5SW79 1584 aa9.07□□□□□ -0.96
ZNF540-201ENST00000316433 CNTLNQ9NXG0 1405 aa9.06□□□□□ -0.96
ZNF540-201ENST00000316433 CDC42BPAQ5VT25 1732 aa9.06□□□□□ -0.96
ZNF540-201ENST00000316433 DISP1Q96F81 1524 aa9.06□□□□□ -0.96
ZNF540-201ENST00000316433 KDM5CP41229 1560 aa9.06□□□□□ -0.96
ZNF540-201ENST00000316433 KTN1Q86UP2 1357 aaKnown RBP9.05□□□□□ -0.96
ZNF540-201ENST00000316433 AMER1Q5JTC6 1135 aaPredicted RBP9.05□□□□□ -0.96
ZNF540-201ENST00000316433 UNC13BO14795 1591 aa9.05□□□□□ -0.96
ZNF540-201ENST00000316433 PTPRGP23470 1445 aa9.05□□□□□ -0.96
ZNF540-201ENST00000316433 ABCA8O94911 1581 aa9.04□□□□□ -0.96
ZNF540-201ENST00000316433 KDM6BO15054 1643 aa9.04□□□□□ -0.96
ZNF540-201ENST00000316433 DAPK1P53355 1430 aa9.03□□□□□ -0.96
ZNF540-201ENST00000316433 PLXNC1O60486 1568 aa9.03□□□□□ -0.96
ZNF540-201ENST00000316433 USP35Q9P2H5 1018 aa9.03□□□□□ -0.96
ZNF540-201ENST00000316433 IPO9Q96P70 1041 aaKnown RBP9.01□□□□□ -0.97
ZNF540-201ENST00000316433 RALGAPBQ86X10 1494 aa9.01□□□□□ -0.97
ZNF540-201ENST00000316433 RNF17Q9BXT8 1623 aaKnown RBP9.01□□□□□ -0.97
ZNF540-201ENST00000316433 EIF4G3O43432 1585 aaKnown RBP9.01□□□□□ -0.97
ZNF540-201ENST00000316433 ANKRD30BQ9BXX2 1392 aa9.01□□□□□ -0.97
ZNF540-201ENST00000316433 NUP153P49790 1475 aaKnown RBP9.01□□□□□ -0.97
ZNF540-201ENST00000316433 NEFMP07197 916 aa9.01□□□□□ -0.97
ZNF540-201ENST00000316433 FAM43AQ8N2R8 423 aa9.01□□□□□ -0.97
ZNF540-201ENST00000316433 ZBTB47Q9UFB7 747 aaPredicted RBP9.01□□□□□ -0.97
ZNF540-201ENST00000316433 PZPP20742 1482 aa9□□□□□ -0.97
ZNF540-201ENST00000316433 MAGI2Q86UL8 1455 aa9□□□□□ -0.97
ZNF540-201ENST00000316433 SHROOM2Q13796 1616 aa9□□□□□ -0.97
ZNF540-201ENST00000316433 KLHL34Q8N239 644 aa9□□□□□ -0.97
ZNF540-201ENST00000316433 NUP160Q12769 1436 aa9□□□□□ -0.97
ZNF540-201ENST00000316433 MTUS2Q5JR59 1369 aa9□□□□□ -0.97
ZNF540-201ENST00000316433 ATP10AO60312 1499 aa8.99□□□□□ -0.97
ZNF540-201ENST00000316433 PREX2Q70Z35 1606 aa8.99□□□□□ -0.97
ZNF540-201ENST00000316433 ANP32AP39687 249 aaKnown RBP8.99□□□□□ -0.97
ZNF540-201ENST00000316433 EIF2AK4Q9P2K8 1649 aaKnown RBP8.99□□□□□ -0.97
ZNF540-201ENST00000316433 ABCC10Q5T3U5 1492 aa8.99□□□□□ -0.97
ZNF540-201ENST00000316433 RRP9O43818 475 aaKnown RBP8.99□□□□□ -0.97
ZNF540-201ENST00000316433 HSP90AA2PQ14568 343 aaPredicted RBP8.99□□□□□ -0.97
ZNF540-201ENST00000316433 TAF7LQ5H9L4 462 aa8.99□□□□□ -0.97
ZNF540-201ENST00000316433 GRIN2AQ12879 1464 aa8.98□□□□□ -0.97
ZNF540-201ENST00000316433 RNF123Q5XPI4 1314 aa8.98□□□□□ -0.97
ZNF540-201ENST00000316433 TROQ12816 1431 aaPredicted RBP8.98□□□□□ -0.97
ZNF540-201ENST00000316433 ABCC5O15440 1437 aa8.97□□□□□ -0.97
ZNF540-201ENST00000316433 TONSLQ96HA7 1378 aa8.97□□□□□ -0.97
ZNF540-201ENST00000316433 RANGAP1P46060 587 aaPredicted RBP8.97□□□□□ -0.97
ZNF540-201ENST00000316433 ROCK2O75116 1388 aaKnown RBP8.97□□□□□ -0.97
ZNF540-201ENST00000316433 IQGAP3Q86VI3 1631 aa8.97□□□□□ -0.97
ZNF540-201ENST00000316433 ARAP3Q8WWN8 1544 aa8.97□□□□□ -0.97
ZNF540-201ENST00000316433 KIAA1210Q9ULL0 1709 aa8.97□□□□□ -0.97
ZNF540-201ENST00000316433 TRPM1Q7Z4N2 1603 aa8.96□□□□□ -0.97
ZNF540-201ENST00000316433 CAMSAP2Q08AD1 1489 aa8.95□□□□□ -0.98
ZNF540-201ENST00000316433 CLASP1Q7Z460 1538 aa8.94□□□□□ -0.98
ZNF540-201ENST00000316433 PPP4R2Q9NY27 417 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms