RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 HSP90B1P14625 803 aaKnown RBP11.03□□□□□ -0.64
USF3-201ENST00000316407 TAF7LQ5H9L4 462 aa11.03□□□□□ -0.64
USF3-201ENST00000316407 MTUS2Q5JR59 1369 aa11.03□□□□□ -0.64
USF3-201ENST00000316407 MCCP23508 829 aa11.03□□□□□ -0.64
USF3-201ENST00000316407 CREBRFQ8IUR6 639 aa11.03□□□□□ -0.64
USF3-201ENST00000316407 USP35Q9P2H5 1018 aa11.02□□□□□ -0.65
USF3-201ENST00000316407 SIN3AQ96ST3 1273 aa11.02□□□□□ -0.65
USF3-201ENST00000316407 ZNF592Q92610 1267 aa11.01□□□□□ -0.65
USF3-201ENST00000316407 CARD11Q9BXL7 1154 aa11.01□□□□□ -0.65
USF3-201ENST00000316407 FOXD4L6Q3SYB3 417 aaPredicted RBP11.01□□□□□ -0.65
USF3-201ENST00000316407 FOXD4L3Q6VB84 417 aaPredicted RBP11.01□□□□□ -0.65
USF3-201ENST00000316407 FBXO3Q9UK99 471 aa11.01□□□□□ -0.65
USF3-201ENST00000316407 U2SURPO15042 1029 aaKnown RBP11□□□□□ -0.65
USF3-201ENST00000316407 ZCCHC6Q5VYS8 1495 aaKnown RBP10.99□□□□□ -0.65
USF3-201ENST00000316407 CALD1Q05682 793 aaKnown RBP10.98□□□□□ -0.65
USF3-201ENST00000316407 CEP162Q5TB80 1403 aa10.98□□□□□ -0.65
USF3-201ENST00000316407 ISY1Q9ULR0 285 aaKnown RBP10.98□□□□□ -0.65
USF3-201ENST00000316407 ITPRIPQ8IWB1 547 aa10.97□□□□□ -0.65
USF3-201ENST00000316407 GOLGA2Q08379 1002 aa10.97□□□□□ -0.65
USF3-201ENST00000316407 PRM3Q9NNZ6 103 aa10.96□□□□□ -0.66
USF3-201ENST00000316407 KIAA1211Q6ZU35 1233 aa10.96□□□□□ -0.66
USF3-201ENST00000316407 PHF14O94880 888 aa10.95□□□□□ -0.66
USF3-201ENST00000316407 RCAN3Q9UKA8 241 aa10.95□□□□□ -0.66
USF3-201ENST00000316407 TCERG1O14776 1098 aaKnown RBP10.95□□□□□ -0.66
USF3-201ENST00000316407 BAZ1BQ9UIG0 1483 aaKnown RBP10.94□□□□□ -0.66
USF3-201ENST00000316407 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.94□□□□□ -0.66
USF3-201ENST00000316407 NPHP1O15259 732 aa10.93□□□□□ -0.66
USF3-201ENST00000316407 PES1O00541 588 aaKnown RBP10.93□□□□□ -0.66
USF3-201ENST00000316407 ABCC9O60706 1549 aa10.93□□□□□ -0.66
USF3-201ENST00000316407 IL27Q8NEV9 243 aa10.93□□□□□ -0.66
USF3-201ENST00000316407 PPP1R15AO75807 674 aaPredicted RBP10.93□□□□□ -0.66
USF3-201ENST00000316407 DDX11L8A8MPP1 907 aa10.93□□□□□ -0.66
USF3-201ENST00000316407 TPM4P67936 248 aa10.92□□□□□ -0.66
USF3-201ENST00000316407 BRPF3Q9ULD4 1205 aa10.92□□□□□ -0.66
USF3-201ENST00000316407 KCNH8Q96L42 1107 aa10.92□□□□□ -0.66
USF3-201ENST00000316407 MS4A1P11836 297 aa10.91□□□□□ -0.66
USF3-201ENST00000316407 TRIM6-TRIM34B2RNG4 842 aa10.9□□□□□ -0.66
USF3-201ENST00000316407 SOX12O15370 315 aa10.9□□□□□ -0.66
USF3-201ENST00000316407 CHMP4BQ9H444 224 aaKnown RBP10.9□□□□□ -0.66
USF3-201ENST00000316407 DDX49Q9Y6V7 483 aaKnown RBP10.9□□□□□ -0.66
USF3-201ENST00000316407 RBM10P98175 930 aaKnown RBP10.9□□□□□ -0.67
USF3-201ENST00000316407 TEX35Q5T0J7 233 aa10.89□□□□□ -0.67
USF3-201ENST00000316407 TPM3P06753 285 aa10.89□□□□□ -0.67
USF3-201ENST00000316407 CHMP3Q9Y3E7 222 aa10.88□□□□□ -0.67
USF3-201ENST00000316407 FAM43AQ8N2R8 423 aa10.88□□□□□ -0.67
USF3-201ENST00000316407 TSPY4P0CV99 314 aa10.88□□□□□ -0.67
USF3-201ENST00000316407 TSPY10P0CW01 314 aa10.88□□□□□ -0.67
USF3-201ENST00000316407 NUDCQ9Y266 331 aa10.87□□□□□ -0.67
USF3-201ENST00000316407 HTATSF1O43719 755 aaKnown RBP10.86□□□□□ -0.67
USF3-201ENST00000316407 LMOD2Q6P5Q4 547 aa10.86□□□□□ -0.67
USF3-201ENST00000316407 RWDD1Q9H446 243 aaPredicted RBP10.86□□□□□ -0.67
USF3-201ENST00000316407 SKIDA1Q1XH10 827 aa10.86□□□□□ -0.67
USF3-201ENST00000316407 RASSF8Q8NHQ8 419 aa10.86□□□□□ -0.67
USF3-201ENST00000316407 CLUAP1Q96AJ1 413 aa10.86□□□□□ -0.67
USF3-201ENST00000316407 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.86□□□□□ -0.67
USF3-201ENST00000316407 DHX37Q8IY37 1157 aaKnown RBP10.86□□□□□ -0.67
USF3-201ENST00000316407 FBXW7Q969H0 707 aa10.85□□□□□ -0.67
USF3-201ENST00000316407 NOM1Q5C9Z4 860 aaKnown RBP10.85□□□□□ -0.67
USF3-201ENST00000316407 GPS2Q13227 327 aa10.85□□□□□ -0.67
USF3-201ENST00000316407 HAP1P54257 671 aaPredicted RBP10.85□□□□□ -0.67
USF3-201ENST00000316407 PDE4AP27815 886 aa10.85□□□□□ -0.67
USF3-201ENST00000316407 KTN1Q86UP2 1357 aaKnown RBP10.85□□□□□ -0.67
USF3-201ENST00000316407 R3HCC1Q9Y3T6 440 aaKnown RBP10.85□□□□□ -0.67
USF3-201ENST00000316407 CDCA8Q53HL2 280 aa10.85□□□□□ -0.67
USF3-201ENST00000316407 MAP7D2Q96T17 732 aa10.84□□□□□ -0.67
USF3-201ENST00000316407 CCER2I3L3R5 266 aa10.84□□□□□ -0.67
USF3-201ENST00000316407 PLIN1O60240 522 aa10.84□□□□□ -0.67
USF3-201ENST00000316407 PLCD4Q9BRC7 762 aa10.84□□□□□ -0.67
USF3-201ENST00000316407 GOLGA6L19H0YKK7 550 aa10.84□□□□□ -0.67
USF3-201ENST00000316407 HOMER1Q86YM7 354 aa10.83□□□□□ -0.68
USF3-201ENST00000316407 KIF16BQ96L93 1317 aa10.83□□□□□ -0.68
USF3-201ENST00000316407 CSPP1Q1MSJ5 1256 aa10.83□□□□□ -0.68
USF3-201ENST00000316407 SAFB2Q14151 953 aaKnown RBP eCLIP10.82□□□□□ -0.68
USF3-201ENST00000316407 GOLGA3Q08378 1498 aa10.82□□□□□ -0.68
USF3-201ENST00000316407 IFT57Q9NWB7 429 aa10.82□□□□□ -0.68
USF3-201ENST00000316407 ST18O60284 1047 aa10.82□□□□□ -0.68
USF3-201ENST00000316407 RRP12Q5JTH9 1297 aaKnown RBP10.81□□□□□ -0.68
USF3-201ENST00000316407 CCDC146Q8IYE0 955 aa10.81□□□□□ -0.68
USF3-201ENST00000316407 WWC1Q8IX03 1113 aa10.81□□□□□ -0.68
USF3-201ENST00000316407 TPD52L1Q16890 204 aaPredicted RBP10.81□□□□□ -0.68
USF3-201ENST00000316407 HSPA5P11021 654 aaKnown RBP10.8□□□□□ -0.68
USF3-201ENST00000316407 HSP90AB3PQ58FF7 597 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 CCDC70Q6NSX1 233 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 H0YHG0 523 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 POGKQ9P215 609 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 FANCIQ9NVI1 1328 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 DCAF11Q8TEB1 546 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 MORC1Q86VD1 984 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 FOXD1Q16676 465 aa10.8□□□□□ -0.68
USF3-201ENST00000316407 SMC4Q9NTJ3 1288 aa10.79□□□□□ -0.68
USF3-201ENST00000316407 BECN2A8MW95 431 aa10.79□□□□□ -0.68
USF3-201ENST00000316407 FAM161AQ3B820 660 aa10.79□□□□□ -0.68
USF3-201ENST00000316407 PMFBP1Q8TBY8 1022 aa10.79□□□□□ -0.68
USF3-201ENST00000316407 TSR1Q2NL82 804 aaKnown RBP10.79□□□□□ -0.68
USF3-201ENST00000316407 SKOR2Q2VWA4 1001 aaPredicted RBP10.79□□□□□ -0.68
USF3-201ENST00000316407 CFAP44Q96MT7 982 aa10.79□□□□□ -0.68
USF3-201ENST00000316407 H3BQV1 296 aa10.78□□□□□ -0.68
USF3-201ENST00000316407 IFFO2Q5TF58 517 aa10.78□□□□□ -0.68
USF3-201ENST00000316407 IPO8O15397 1037 aaKnown RBP10.78□□□□□ -0.68
USF3-201ENST00000316407 MCTP1Q6DN14 999 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 197.3 ms