RNA–Protein interactions for RNA: ENST00000308330.2

LEMD3-201, Transcript of LEM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LEMD3, Length 4,764 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-201ENST00000308330 GSE1Q14687 1217 aa19.84■□□□□ 0.77
LEMD3-201ENST00000308330 POGKQ9P215 609 aa19.83■□□□□ 0.76
LEMD3-201ENST00000308330 DNAJC5BQ9UF47 199 aa19.82■□□□□ 0.76
LEMD3-201ENST00000308330 KANK1Q14678 1352 aa19.82■□□□□ 0.76
LEMD3-201ENST00000308330 RRP9O43818 475 aaKnown RBP19.82■□□□□ 0.76
LEMD3-201ENST00000308330 LMOD2Q6P5Q4 547 aa19.81■□□□□ 0.76
LEMD3-201ENST00000308330 CARD11Q9BXL7 1154 aa19.8■□□□□ 0.76
LEMD3-201ENST00000308330 SIN3AQ96ST3 1273 aa19.8■□□□□ 0.76
LEMD3-201ENST00000308330 VPS8Q8N3P4 1428 aa19.79■□□□□ 0.76
LEMD3-201ENST00000308330 BECN1Q14457 450 aa19.79■□□□□ 0.76
LEMD3-201ENST00000308330 FHOD3Q2V2M9 1422 aa19.79■□□□□ 0.76
LEMD3-201ENST00000308330 PTPRGP23470 1445 aa19.78■□□□□ 0.76
LEMD3-201ENST00000308330 MSNP26038 577 aaKnown RBP19.78■□□□□ 0.76
LEMD3-201ENST00000308330 RBM10P98175 930 aaKnown RBP19.77■□□□□ 0.76
LEMD3-201ENST00000308330 WDR43Q15061 677 aaKnown RBP eCLIP19.77■□□□□ 0.76
LEMD3-201ENST00000308330 HDGFP51858 240 aaKnown RBP19.76■□□□□ 0.75
LEMD3-201ENST00000308330 HNRNPMP52272 730 aaKnown RBP eCLIP19.75■□□□□ 0.751e-7■■■■■ 29.7
LEMD3-201ENST00000308330 RAD54L2Q9Y4B4 1467 aa19.75■□□□□ 0.75
LEMD3-201ENST00000308330 KIF3BO15066 747 aa19.75■□□□□ 0.75
LEMD3-201ENST00000308330 B4GALNT3Q6L9W6 998 aa19.74■□□□□ 0.75
LEMD3-201ENST00000308330 MRS2Q9HD23 443 aa19.73■□□□□ 0.75
LEMD3-201ENST00000308330 DCAF11Q8TEB1 546 aa19.73■□□□□ 0.75
LEMD3-201ENST00000308330 FGD5Q6ZNL6 1462 aa19.73■□□□□ 0.75
LEMD3-201ENST00000308330 GAPVD1Q14C86 1478 aa19.72■□□□□ 0.75
LEMD3-201ENST00000308330 CDCA8Q53HL2 280 aa19.72■□□□□ 0.75
LEMD3-201ENST00000308330 AQRO60306 1485 aaKnown RBP eCLIP19.71■□□□□ 0.75
LEMD3-201ENST00000308330 BRPF3Q9ULD4 1205 aa19.7■□□□□ 0.74
LEMD3-201ENST00000308330 PKD2Q13563 968 aa19.7■□□□□ 0.74
LEMD3-201ENST00000308330 SPAG9O60271 1321 aaKnown RBP19.7■□□□□ 0.74
LEMD3-201ENST00000308330 ARHGAP35Q9NRY4 1499 aa19.7■□□□□ 0.74
LEMD3-201ENST00000308330 NESP48681 1621 aa19.68■□□□□ 0.74
LEMD3-201ENST00000308330 BCL11BQ9C0K0 894 aaPredicted RBP19.68■□□□□ 0.74
LEMD3-201ENST00000308330 RUSC2Q8N2Y8 1516 aa19.68■□□□□ 0.74
LEMD3-201ENST00000308330 IGF1RP08069 1367 aa19.68■□□□□ 0.74
LEMD3-201ENST00000308330 FAM43AQ8N2R8 423 aa19.68■□□□□ 0.74
LEMD3-201ENST00000308330 BBXQ8WY36 941 aaPredicted RBP19.67■□□□□ 0.74
LEMD3-201ENST00000308330 PTMAP06454 111 aaKnown RBP19.66■□□□□ 0.74
LEMD3-201ENST00000308330 KNSTRNQ9Y448 316 aa19.65■□□□□ 0.74
LEMD3-201ENST00000308330 SAFB2Q14151 953 aaKnown RBP eCLIP19.65■□□□□ 0.74
LEMD3-201ENST00000308330 FOXD1Q16676 465 aa19.64■□□□□ 0.74
LEMD3-201ENST00000308330 CC2D2AQ9P2K1 1620 aa19.64■□□□□ 0.73
LEMD3-201ENST00000308330 RSPH4AQ5TD94 716 aa19.63■□□□□ 0.73
LEMD3-201ENST00000308330 NUP155O75694 1391 aa19.62■□□□□ 0.73
LEMD3-201ENST00000308330 FAM69CQ0P6D2 419 aa19.62■□□□□ 0.73
LEMD3-201ENST00000308330 WASHC2CQ9Y4E1 1318 aa19.61■□□□□ 0.73
LEMD3-201ENST00000308330 STK26Q9P289 416 aa19.61■□□□□ 0.73
LEMD3-201ENST00000308330 ANKRD30AQ9BXX3 1397 aa19.6■□□□□ 0.73
LEMD3-201ENST00000308330 PAXIP1Q6ZW49 1069 aaPredicted RBP19.59■□□□□ 0.73
LEMD3-201ENST00000308330 MAP7D2Q96T17 732 aa19.59■□□□□ 0.73
LEMD3-201ENST00000308330 GOLGA6L3A6NEY3 463 aa19.57■□□□□ 0.72
LEMD3-201ENST00000308330 CFAP53Q96M91 514 aa19.56■□□□□ 0.72
LEMD3-201ENST00000308330 GOLGA6L22H0YM25 854 aa19.55■□□□□ 0.72
LEMD3-201ENST00000308330 SRPK2P78362 688 aaKnown RBP19.55■□□□□ 0.72
LEMD3-201ENST00000308330 FAM13BQ9NYF5 915 aa19.55■□□□□ 0.72
LEMD3-201ENST00000308330 CFTRP13569 1480 aa19.55■□□□□ 0.72
LEMD3-201ENST00000308330 CCDC18Q5T9S5 1454 aa19.55■□□□□ 0.72
LEMD3-201ENST00000308330 SETD5Q9C0A6 1442 aa19.53■□□□□ 0.72
LEMD3-201ENST00000308330 MPHOSPH9Q99550 1183 aa19.53■□□□□ 0.72
LEMD3-201ENST00000308330 SOX12O15370 315 aa19.52■□□□□ 0.71
LEMD3-201ENST00000308330 MSH5O43196 834 aa19.51■□□□□ 0.71
LEMD3-201ENST00000308330 FGD1P98174 961 aa19.5■□□□□ 0.71
LEMD3-201ENST00000308330 MYH16Q9H6N6 1097 aa19.5■□□□□ 0.71
LEMD3-201ENST00000308330 SENP3-EIF4A1A0A087X0R7 540 aa19.49■□□□□ 0.71
LEMD3-201ENST00000308330 CHAF1AQ13111 956 aaPredicted RBP19.49■□□□□ 0.71
LEMD3-201ENST00000308330 TPM2P07951 284 aa19.49■□□□□ 0.71
LEMD3-201ENST00000308330 ZNF771Q7L3S4 317 aaPredicted RBP19.49■□□□□ 0.71
LEMD3-201ENST00000308330 TMF1P82094 1093 aa19.48■□□□□ 0.71
LEMD3-201ENST00000308330 EID1Q9Y6B2 187 aa19.47■□□□□ 0.71
LEMD3-201ENST00000308330 PATL2C9JE40 543 aaKnown RBP19.47■□□□□ 0.71
LEMD3-201ENST00000308330 NUTM2DQ5VT03 806 aaPredicted RBP19.47■□□□□ 0.71
LEMD3-201ENST00000308330 GRIN2BQ13224 1484 aa19.47■□□□□ 0.71
LEMD3-201ENST00000308330 MRC2Q9UBG0 1479 aa19.47■□□□□ 0.71
LEMD3-201ENST00000308330 MTERF4Q7Z6M4 381 aaKnown RBP19.46■□□□□ 0.71
LEMD3-201ENST00000308330 NAP1L2Q9ULW6 460 aaPredicted RBP19.44■□□□□ 0.7
LEMD3-201ENST00000308330 NEUROD2Q15784 382 aa19.44■□□□□ 0.7
LEMD3-201ENST00000308330 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.43■□□□□ 0.7
LEMD3-201ENST00000308330 HOMEZQ8IX15 550 aa19.43■□□□□ 0.7
LEMD3-201ENST00000308330 NUDCQ9Y266 331 aa19.43■□□□□ 0.7
LEMD3-201ENST00000308330 CC2D1BQ5T0F9 858 aaKnown RBP19.41■□□□□ 0.7
LEMD3-201ENST00000308330 RAB3GAP2Q9H2M9 1393 aa19.4■□□□□ 0.7
LEMD3-201ENST00000308330 GZF1Q9H116 711 aaPredicted RBP19.4■□□□□ 0.7
LEMD3-201ENST00000308330 U2SURPO15042 1029 aaKnown RBP19.39■□□□□ 0.69
LEMD3-201ENST00000308330 HMGXB3Q12766 1538 aa19.38■□□□□ 0.69
LEMD3-201ENST00000308330 PAK3O75914 559 aaPredicted RBP19.37■□□□□ 0.69
LEMD3-201ENST00000308330 FRAT1Q92837 279 aaPredicted RBP19.37■□□□□ 0.69
LEMD3-201ENST00000308330 MAPK8IP3Q9UPT6 1336 aa19.36■□□□□ 0.69
LEMD3-201ENST00000308330 IFT140Q96RY7 1462 aa19.36■□□□□ 0.69
LEMD3-201ENST00000308330 BICRAQ9NZM4 1560 aa19.35■□□□□ 0.69
LEMD3-201ENST00000308330 PRG4Q92954 1404 aaPredicted RBP19.35■□□□□ 0.69
LEMD3-201ENST00000308330 TOPBP1Q92547 1522 aa19.34■□□□□ 0.69
LEMD3-201ENST00000308330 CALRP27797 417 aaKnown RBP19.34■□□□□ 0.69
LEMD3-201ENST00000308330 TCERG1O14776 1098 aaKnown RBP19.33■□□□□ 0.69
LEMD3-201ENST00000308330 BRD2P25440 801 aaKnown RBP19.32■□□□□ 0.68
LEMD3-201ENST00000308330 PDCL3Q9H2J4 239 aa19.32■□□□□ 0.68
LEMD3-201ENST00000308330 KLHL34Q8N239 644 aa19.32■□□□□ 0.68
LEMD3-201ENST00000308330 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.32■□□□□ 0.68
LEMD3-201ENST00000308330 ZNF644Q9H582 1327 aaPredicted RBP19.31■□□□□ 0.68
LEMD3-201ENST00000308330 NUTM2FA1L443 756 aa19.31■□□□□ 0.68
LEMD3-201ENST00000308330 NCBP3Q53F19 620 aaKnown RBP19.31■□□□□ 0.68
LEMD3-201ENST00000308330 TAF3Q5VWG9 929 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms