RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 KTN1Q86UP2 1357 aaKnown RBP17.84■□□□□ 0.45
PRKCB-201ENST00000303531 SAFB2Q14151 953 aaKnown RBP eCLIP17.82■□□□□ 0.444e-7■■■■□ 20.4
PRKCB-201ENST00000303531 RAB3GAP2Q9H2M9 1393 aa17.82■□□□□ 0.44
PRKCB-201ENST00000303531 SPRYD3Q8NCJ5 442 aa17.82■□□□□ 0.44
PRKCB-201ENST00000303531 SOX12O15370 315 aa17.8■□□□□ 0.44
PRKCB-201ENST00000303531 DEKP35659 375 aaKnown RBP17.79■□□□□ 0.44
PRKCB-201ENST00000303531 NAP1L2Q9ULW6 460 aaPredicted RBP17.79■□□□□ 0.44
PRKCB-201ENST00000303531 CCDC88BA6NC98 1476 aa17.79■□□□□ 0.44
PRKCB-201ENST00000303531 RCAN3Q9UKA8 241 aa17.77■□□□□ 0.44
PRKCB-201ENST00000303531 MPHOSPH9Q99550 1183 aa17.77■□□□□ 0.43
PRKCB-201ENST00000303531 ROCK2O75116 1388 aaKnown RBP17.76■□□□□ 0.43
PRKCB-201ENST00000303531 GOLGA6L6A8MZA4 724 aa17.75■□□□□ 0.43
PRKCB-201ENST00000303531 MROH2BQ7Z745 1585 aa17.75■□□□□ 0.43
PRKCB-201ENST00000303531 TULP1O00294 542 aaPredicted RBP17.75■□□□□ 0.43
PRKCB-201ENST00000303531 GOLGA6L4A6NEF3 574 aa17.74■□□□□ 0.43
PRKCB-201ENST00000303531 L1TD1Q5T7N2 865 aaKnown RBP17.74■□□□□ 0.43
PRKCB-201ENST00000303531 MCCP23508 829 aa17.74■□□□□ 0.43
PRKCB-201ENST00000303531 RALBP1Q15311 655 aa17.73■□□□□ 0.43
PRKCB-201ENST00000303531 MLECQ14165 292 aa17.73■□□□□ 0.43
PRKCB-201ENST00000303531 STK26Q9P289 416 aa17.73■□□□□ 0.43
PRKCB-201ENST00000303531 GGT6Q6P531 493 aa17.72■□□□□ 0.43
PRKCB-201ENST00000303531 NPHP1O15259 732 aa17.71■□□□□ 0.43
PRKCB-201ENST00000303531 NUP155O75694 1391 aa17.71■□□□□ 0.43
PRKCB-201ENST00000303531 IPO8O15397 1037 aaKnown RBP17.71■□□□□ 0.43
PRKCB-201ENST00000303531 HDGFP51858 240 aaKnown RBP17.71■□□□□ 0.43
PRKCB-201ENST00000303531 APBB1O00213 710 aa17.7■□□□□ 0.42
PRKCB-201ENST00000303531 RTF1Q92541 710 aaKnown RBP17.7■□□□□ 0.42
PRKCB-201ENST00000303531 U2AF1L5P0DN76 240 aaPredicted RBP17.69■□□□□ 0.42
PRKCB-201ENST00000303531 U2AF1Q01081 240 aaKnown RBP eCLIP17.69■□□□□ 0.42
PRKCB-201ENST00000303531 HDGFL2Q7Z4V5 671 aaPredicted RBP17.69■□□□□ 0.42
PRKCB-201ENST00000303531 NRDCO43847 1150 aa17.69■□□□□ 0.42
PRKCB-201ENST00000303531 CFAP44Q96MT7 982 aa17.69■□□□□ 0.42
PRKCB-201ENST00000303531 FMN1Q68DA7 1419 aa17.69■□□□□ 0.42
PRKCB-201ENST00000303531 MSNP26038 577 aaKnown RBP17.69■□□□□ 0.42
PRKCB-201ENST00000303531 TCERG1O14776 1098 aaKnown RBP17.68■□□□□ 0.42
PRKCB-201ENST00000303531 GOLGA2Q08379 1002 aa17.68■□□□□ 0.42
PRKCB-201ENST00000303531 ITPRIPQ8IWB1 547 aa17.67■□□□□ 0.42
PRKCB-201ENST00000303531 RWDD1Q9H446 243 aaPredicted RBP17.66■□□□□ 0.42
PRKCB-201ENST00000303531 ANKRD30AQ9BXX3 1397 aa17.66■□□□□ 0.42
PRKCB-201ENST00000303531 CARMIL2Q6F5E8 1435 aa17.65■□□□□ 0.42
PRKCB-201ENST00000303531 CHAF1AQ13111 956 aaPredicted RBP17.65■□□□□ 0.42
PRKCB-201ENST00000303531 SLKQ9H2G2 1235 aaPredicted RBP17.64■□□□□ 0.41
PRKCB-201ENST00000303531 TSHZ2Q9NRE2 1034 aa17.64■□□□□ 0.41
PRKCB-201ENST00000303531 L3MBTL2Q969R5 705 aa17.63■□□□□ 0.41
PRKCB-201ENST00000303531 CALD1Q05682 793 aaKnown RBP17.62■□□□□ 0.41
PRKCB-201ENST00000303531 GBP4Q96PP9 640 aa17.62■□□□□ 0.41
PRKCB-201ENST00000303531 DRC7Q8IY82 874 aa17.61■□□□□ 0.41
PRKCB-201ENST00000303531 TDRD9Q8NDG6 1382 aaKnown RBP17.61■□□□□ 0.41
PRKCB-201ENST00000303531 GZF1Q9H116 711 aaPredicted RBP17.6■□□□□ 0.41
PRKCB-201ENST00000303531 KIAA1211Q6ZU35 1233 aa17.6■□□□□ 0.41
PRKCB-201ENST00000303531 EIF3AQ14152 1382 aaKnown RBP17.59■□□□□ 0.41
PRKCB-201ENST00000303531 PMFBP1Q8TBY8 1022 aa17.59■□□□□ 0.41
PRKCB-201ENST00000303531 SMARCA2P51531 1590 aa17.58■□□□□ 0.41
PRKCB-201ENST00000303531 EFCAB2Q5VUJ9 269 aa17.57■□□□□ 0.4
PRKCB-201ENST00000303531 CCDC146Q8IYE0 955 aa17.57■□□□□ 0.4
PRKCB-201ENST00000303531 MFAP1P55081 439 aaKnown RBP17.57■□□□□ 0.4
PRKCB-201ENST00000303531 SMC4Q9NTJ3 1288 aa17.57■□□□□ 0.4
PRKCB-201ENST00000303531 NLRP13Q86W25 1043 aa17.56■□□□□ 0.4
PRKCB-201ENST00000303531 FHOD3Q2V2M9 1422 aa17.56■□□□□ 0.4
PRKCB-201ENST00000303531 IPO9Q96P70 1041 aaKnown RBP17.56■□□□□ 0.4
PRKCB-201ENST00000303531 PTMSP20962 102 aa17.56■□□□□ 0.4
PRKCB-201ENST00000303531 PAK3O75914 559 aaPredicted RBP17.55■□□□□ 0.4
PRKCB-201ENST00000303531 HNRNPMP52272 730 aaKnown RBP eCLIP17.54■□□□□ 0.41e-6■■■■□ 23.1
PRKCB-201ENST00000303531 CLUAP1Q96AJ1 413 aa17.54■□□□□ 0.4
PRKCB-201ENST00000303531 WIZO95785 1651 aa17.53■□□□□ 0.4
PRKCB-201ENST00000303531 GNL2Q13823 731 aaKnown RBP17.53■□□□□ 0.4
PRKCB-201ENST00000303531 PDS5BQ9NTI5 1447 aa17.53■□□□□ 0.4
PRKCB-201ENST00000303531 PDE3BQ13370 1112 aa17.52■□□□□ 0.4
PRKCB-201ENST00000303531 TOP2AP11388 1531 aaKnown RBP17.52■□□□□ 0.4
PRKCB-201ENST00000303531 KIF3BO15066 747 aa17.52■□□□□ 0.4
PRKCB-201ENST00000303531 RAPGEF2Q9Y4G8 1499 aa17.52■□□□□ 0.39
PRKCB-201ENST00000303531 CENPJQ9HC77 1338 aaPredicted RBP17.51■□□□□ 0.39
PRKCB-201ENST00000303531 STK31Q9BXU1 1019 aa17.5■□□□□ 0.39
PRKCB-201ENST00000303531 TERF2IPQ9NYB0 399 aa17.49■□□□□ 0.39
PRKCB-201ENST00000303531 SPAG9O60271 1321 aaKnown RBP17.49■□□□□ 0.39
PRKCB-201ENST00000303531 DHX57Q6P158 1386 aaKnown RBP17.48■□□□□ 0.39
PRKCB-201ENST00000303531 TRHP20396 242 aaPredicted RBP17.48■□□□□ 0.39
PRKCB-201ENST00000303531 KIF15Q9NS87 1388 aa17.48■□□□□ 0.39
PRKCB-201ENST00000303531 CCDC18Q5T9S5 1454 aa17.48■□□□□ 0.39
PRKCB-201ENST00000303531 KIAA2012Q0VF49 1180 aa17.48■□□□□ 0.39
PRKCB-201ENST00000303531 GOLGA6L3A6NEY3 463 aa17.47■□□□□ 0.39
PRKCB-201ENST00000303531 NUTM2DQ5VT03 806 aaPredicted RBP17.47■□□□□ 0.39
PRKCB-201ENST00000303531 ZNF330Q9Y3S2 320 aaPredicted RBP17.46■□□□□ 0.39
PRKCB-201ENST00000303531 PHLDB1Q86UU1 1377 aa17.46■□□□□ 0.39
PRKCB-201ENST00000303531 TRIM6-TRIM34B2RNG4 842 aa17.46■□□□□ 0.39
PRKCB-201ENST00000303531 SYAP1Q96A49 352 aaPredicted RBP17.46■□□□□ 0.39
PRKCB-201ENST00000303531 MYBBP1AQ9BQG0 1328 aaKnown RBP17.46■□□□□ 0.39
PRKCB-201ENST00000303531 CSB-PGBD3P0DP91 1061 aa17.46■□□□□ 0.39
PRKCB-201ENST00000303531 HMMRO75330 724 aa17.45■□□□□ 0.38
PRKCB-201ENST00000303531 ISY1Q9ULR0 285 aaKnown RBP17.45■□□□□ 0.38
PRKCB-201ENST00000303531 SLC4A10Q6U841 1118 aa17.44■□□□□ 0.38
PRKCB-201ENST00000303531 ST20-MTHFSA0A0A6YYL1 179 aa17.44■□□□□ 0.38
PRKCB-201ENST00000303531 FOXD4L1Q9NU39 408 aa17.44■□□□□ 0.38
PRKCB-201ENST00000303531 HTATSF1O43719 755 aaKnown RBP17.43■□□□□ 0.38
PRKCB-201ENST00000303531 RSPH4AQ5TD94 716 aa17.42■□□□□ 0.38
PRKCB-201ENST00000303531 CHMP4AQ9BY43 222 aa17.42■□□□□ 0.38
PRKCB-201ENST00000303531 PANK3Q9H999 370 aa17.42■□□□□ 0.38
PRKCB-201ENST00000303531 RRP7AQ9Y3A4 280 aaKnown RBP17.42■□□□□ 0.38
PRKCB-201ENST00000303531 GPATCH3Q96I76 525 aa17.42■□□□□ 0.38
PRKCB-201ENST00000303531 NOL8Q76FK4 1167 aaKnown RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms