RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 ADAMTS12P58397 1594 aa33.84■■■■□ 3.01
SPTSSA-201ENST00000298130 ZNF777Q9ULD5 760 aaPredicted RBP33.83■■■■□ 3.01
SPTSSA-201ENST00000298130 MIA2Q96PC5 1412 aa33.83■■■■□ 3.01
SPTSSA-201ENST00000298130 DAPK1P53355 1430 aa33.8■■■■□ 3
SPTSSA-201ENST00000298130 ZNF326Q5BKZ1 582 aaKnown RBP33.78■■■■□ 3
SPTSSA-201ENST00000298130 ABCC5O15440 1437 aa33.78■■■■□ 3
SPTSSA-201ENST00000298130 POLR3GLQ9BT43 218 aa33.77■■■■□ 3
SPTSSA-201ENST00000298130 ANP32EQ9BTT0 268 aa33.77■■■■□ 3
SPTSSA-201ENST00000298130 ANKRD30BQ9BXX2 1392 aa33.76■■■□□ 2.99
SPTSSA-201ENST00000298130 FBLN2P98095 1184 aa33.75■■■□□ 2.99
SPTSSA-201ENST00000298130 AKNAQ7Z591 1439 aa33.74■■■□□ 2.99
SPTSSA-201ENST00000298130 CCDC7Q96M83 1385 aa33.74■■■□□ 2.99
SPTSSA-201ENST00000298130 PRKRIP1Q9H875 184 aaPredicted RBP33.74■■■□□ 2.99
SPTSSA-201ENST00000298130 CNTLNQ9NXG0 1405 aa33.73■■■□□ 2.99
SPTSSA-201ENST00000298130 MRS2Q9HD23 443 aa33.73■■■□□ 2.99
SPTSSA-201ENST00000298130 SENP3-EIF4A1A0A087X0R7 540 aa33.72■■■□□ 2.99
SPTSSA-201ENST00000298130 MRC2Q9UBG0 1479 aa33.72■■■□□ 2.99
SPTSSA-201ENST00000298130 NUP153P49790 1475 aaKnown RBP33.7■■■□□ 2.99
SPTSSA-201ENST00000298130 PRG4Q92954 1404 aaPredicted RBP33.7■■■□□ 2.98
SPTSSA-201ENST00000298130 DISP1Q96F81 1524 aa33.69■■■□□ 2.98
SPTSSA-201ENST00000298130 CFDP1Q9UEE9 299 aaPredicted RBP33.67■■■□□ 2.98
SPTSSA-201ENST00000298130 KIF7Q2M1P5 1343 aa33.67■■■□□ 2.98
SPTSSA-201ENST00000298130 NCOA1Q15788 1441 aa33.65■■■□□ 2.98
SPTSSA-201ENST00000298130 RPRD2Q5VT52 1461 aaKnown RBP33.64■■■□□ 2.98
SPTSSA-201ENST00000298130 CDK11AQ9UQ88 783 aaPredicted RBP33.64■■■□□ 2.98
SPTSSA-201ENST00000298130 KIAA0556O60303 1618 aa33.6■■■□□ 2.97
SPTSSA-201ENST00000298130 ROCK1Q13464 1354 aa33.6■■■□□ 2.97
SPTSSA-201ENST00000298130 KIAA0586Q9BVV6 1533 aa33.6■■■□□ 2.97
SPTSSA-201ENST00000298130 TEX14Q8IWB6 1497 aa33.6■■■□□ 2.97
SPTSSA-201ENST00000298130 CHMP7Q8WUX9 453 aaPredicted RBP33.57■■■□□ 2.96
SPTSSA-201ENST00000298130 PLB1Q6P1J6 1458 aa33.56■■■□□ 2.96
SPTSSA-201ENST00000298130 DNMT1P26358 1616 aaKnown RBP33.55■■■□□ 2.96
SPTSSA-201ENST00000298130 PKD2Q13563 968 aa33.54■■■□□ 2.96
SPTSSA-201ENST00000298130 IFT140Q96RY7 1462 aa33.52■■■□□ 2.96
SPTSSA-201ENST00000298130 GRIN2AQ12879 1464 aa33.5■■■□□ 2.95
SPTSSA-201ENST00000298130 RAPGEF6Q8TEU7 1601 aa33.5■■■□□ 2.95
SPTSSA-201ENST00000298130 PZPP20742 1482 aa33.48■■■□□ 2.95
SPTSSA-201ENST00000298130 SPATA31E1Q6ZUB1 1445 aa33.48■■■□□ 2.95
SPTSSA-201ENST00000298130 CAMSAP2Q08AD1 1489 aa33.48■■■□□ 2.95
SPTSSA-201ENST00000298130 B4GALNT3Q6L9W6 998 aa33.47■■■□□ 2.95
SPTSSA-201ENST00000298130 MSH5O43196 834 aa33.44■■■□□ 2.94
SPTSSA-201ENST00000298130 TROQ12816 1431 aaPredicted RBP33.44■■■□□ 2.94
SPTSSA-201ENST00000298130 GPATCH8Q9UKJ3 1502 aaKnown RBP33.42■■■□□ 2.94
SPTSSA-201ENST00000298130 KDM2AQ9Y2K7 1162 aa33.41■■■□□ 2.94
SPTSSA-201ENST00000298130 KIF14Q15058 1648 aa33.4■■■□□ 2.94
SPTSSA-201ENST00000298130 EIF4G3O43432 1585 aaKnown RBP33.38■■■□□ 2.93
SPTSSA-201ENST00000298130 USP47Q96K76 1375 aa33.38■■■□□ 2.93
SPTSSA-201ENST00000298130 ZBED9Q6R2W3 1325 aa33.38■■■□□ 2.93
SPTSSA-201ENST00000298130 JPH4Q96JJ6 628 aa33.38■■■□□ 2.93
SPTSSA-201ENST00000298130 PPP4R2Q9NY27 417 aa33.35■■■□□ 2.93
SPTSSA-201ENST00000298130 KIAA1107Q9UPP5 1409 aa33.33■■■□□ 2.93
SPTSSA-201ENST00000298130 NUP155O75694 1391 aa33.31■■■□□ 2.92
SPTSSA-201ENST00000298130 CEP170Q5SW79 1584 aa33.29■■■□□ 2.92
SPTSSA-201ENST00000298130 PLEKHD1A6NEE1 506 aa33.29■■■□□ 2.92
SPTSSA-201ENST00000298130 ANKRD30AQ9BXX3 1397 aa33.29■■■□□ 2.92
SPTSSA-201ENST00000298130 DHX29Q7Z478 1369 aaKnown RBP33.28■■■□□ 2.92
SPTSSA-201ENST00000298130 ANKRD50Q9ULJ7 1429 aa33.28■■■□□ 2.92
SPTSSA-201ENST00000298130 HNRNPMP52272 730 aaKnown RBP eCLIP33.28■■■□□ 2.929e-8■■■□□ 18.7
SPTSSA-201ENST00000298130 ERCC6Q03468 1493 aa33.28■■■□□ 2.92
SPTSSA-201ENST00000298130 CARD11Q9BXL7 1154 aa33.26■■■□□ 2.91
SPTSSA-201ENST00000298130 BCORL1Q5H9F3 1711 aa33.24■■■□□ 2.91
SPTSSA-201ENST00000298130 DCAF11Q8TEB1 546 aa33.2■■■□□ 2.91
SPTSSA-201ENST00000298130 MBD5Q9P267 1494 aa33.2■■■□□ 2.91
SPTSSA-201ENST00000298130 ST20-MTHFSA0A0A6YYL1 179 aa33.19■■■□□ 2.9
SPTSSA-201ENST00000298130 TSPY4P0CV99 314 aa33.18■■■□□ 2.9
SPTSSA-201ENST00000298130 TSPY10P0CW01 314 aa33.18■■■□□ 2.9
SPTSSA-201ENST00000298130 CARMIL2Q6F5E8 1435 aa33.17■■■□□ 2.9
SPTSSA-201ENST00000298130 SYNJ2O15056 1496 aa33.16■■■□□ 2.9
SPTSSA-201ENST00000298130 C9orf84Q5VXU9 1444 aa33.13■■■□□ 2.89
SPTSSA-201ENST00000298130 ITSN2Q9NZM3 1697 aa33.13■■■□□ 2.89
SPTSSA-201ENST00000298130 TMC1Q8TDI8 760 aa33.13■■■□□ 2.89
SPTSSA-201ENST00000298130 ADGRL2O95490 1459 aa33.13■■■□□ 2.89
SPTSSA-201ENST00000298130 ERICH6BQ5W0A0 696 aa33.13■■■□□ 2.89
SPTSSA-201ENST00000298130 MAGI1Q96QZ7 1491 aaPredicted RBP33.12■■■□□ 2.89
SPTSSA-201ENST00000298130 SALL2Q9Y467 1007 aaPredicted RBP33.11■■■□□ 2.89
SPTSSA-201ENST00000298130 ADGBQ8N7X0 1667 aa33.11■■■□□ 2.89
SPTSSA-201ENST00000298130 RGL3Q3MIN7 710 aa33.09■■■□□ 2.89
SPTSSA-201ENST00000298130 ATP10BO94823 1461 aa33.09■■■□□ 2.89
SPTSSA-201ENST00000298130 PNISRQ8TF01 805 aaKnown RBP33.07■■■□□ 2.88
SPTSSA-201ENST00000298130 FANCIQ9NVI1 1328 aa33.07■■■□□ 2.88
SPTSSA-201ENST00000298130 NUDCQ9Y266 331 aa33.06■■■□□ 2.88
SPTSSA-201ENST00000298130 KDM5CP41229 1560 aa33.05■■■□□ 2.88
SPTSSA-201ENST00000298130 KIF15Q9NS87 1388 aa33.05■■■□□ 2.88
SPTSSA-201ENST00000298130 POLR1AO95602 1720 aaPredicted RBP33.05■■■□□ 2.88
SPTSSA-201ENST00000298130 ERICH6Q7L0X2 663 aa33.04■■■□□ 2.88
SPTSSA-201ENST00000298130 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.04■■■□□ 2.884e-31■■□□□ 12.1
SPTSSA-201ENST00000298130 CROCC2H7BZ55 1655 aa33.03■■■□□ 2.88
SPTSSA-201ENST00000298130 ABCC10Q5T3U5 1492 aa33■■■□□ 2.87
SPTSSA-201ENST00000298130 ADCY10Q96PN6 1610 aa33■■■□□ 2.87
SPTSSA-201ENST00000298130 CDC42BPAQ5VT25 1732 aa33■■■□□ 2.87
SPTSSA-201ENST00000298130 NUP160Q12769 1436 aa32.99■■■□□ 2.87
SPTSSA-201ENST00000298130 SMG6Q86US8 1419 aaKnown RBP32.99■■■□□ 2.87
SPTSSA-201ENST00000298130 NBPF1Q3BBV0 1214 aa32.96■■■□□ 2.87
SPTSSA-201ENST00000298130 RALGAPBQ86X10 1494 aa32.96■■■□□ 2.87
SPTSSA-201ENST00000298130 ROCK2O75116 1388 aaKnown RBP32.95■■■□□ 2.87
SPTSSA-201ENST00000298130 CCDC136Q96JN2 1154 aa32.95■■■□□ 2.86
SPTSSA-201ENST00000298130 UHRF1BP1Q6BDS2 1440 aa32.93■■■□□ 2.86
SPTSSA-201ENST00000298130 ABCA8O94911 1581 aa32.91■■■□□ 2.86
SPTSSA-201ENST00000298130 ARID4BQ4LE39 1312 aaPredicted RBP32.89■■■□□ 2.86
SPTSSA-201ENST00000298130 PTPRGP23470 1445 aa32.86■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms