RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CHGAP10645 457 aaKnown RBP20.53■□□□□ 0.88
SHH-201ENST00000297261 RGL3Q3MIN7 710 aa20.52■□□□□ 0.88
SHH-201ENST00000297261 HNRNPMP52272 730 aaKnown RBP eCLIP20.52■□□□□ 0.87
SHH-201ENST00000297261 LAS1LQ9Y4W2 734 aaKnown RBP20.51■□□□□ 0.87
SHH-201ENST00000297261 ZNF644Q9H582 1327 aaPredicted RBP20.5■□□□□ 0.87
SHH-201ENST00000297261 IQGAP2Q13576 1575 aa20.5■□□□□ 0.87
SHH-201ENST00000297261 KIF21AQ7Z4S6 1674 aa20.5■□□□□ 0.87
SHH-201ENST00000297261 KIAA0586Q9BVV6 1533 aa20.5■□□□□ 0.87
SHH-201ENST00000297261 GLIPR1L2Q4G1C9 344 aa20.49■□□□□ 0.87
SHH-201ENST00000297261 ANKRD30AQ9BXX3 1397 aa20.47■□□□□ 0.87
SHH-201ENST00000297261 PKD2Q13563 968 aa20.47■□□□□ 0.87
SHH-201ENST00000297261 NEFMP07197 916 aa20.45■□□□□ 0.86
SHH-201ENST00000297261 PPP1R15AO75807 674 aaPredicted RBP20.44■□□□□ 0.86
SHH-201ENST00000297261 GRIN2AQ12879 1464 aa20.44■□□□□ 0.86
SHH-201ENST00000297261 PRG4Q92954 1404 aaPredicted RBP20.43■□□□□ 0.86
SHH-201ENST00000297261 EFCAB2Q5VUJ9 269 aa20.43■□□□□ 0.86
SHH-201ENST00000297261 SYNJ2O15056 1496 aa20.41■□□□□ 0.86
SHH-201ENST00000297261 NUP155O75694 1391 aa20.41■□□□□ 0.86
SHH-201ENST00000297261 EHBP1L1Q8N3D4 1523 aa20.41■□□□□ 0.86
SHH-201ENST00000297261 CDK13Q14004 1512 aaKnown RBP20.4■□□□□ 0.86
SHH-201ENST00000297261 MAP3K1Q13233 1512 aa20.4■□□□□ 0.86
SHH-201ENST00000297261 HECW1Q76N89 1606 aa20.39■□□□□ 0.85
SHH-201ENST00000297261 MAGI1Q96QZ7 1491 aaPredicted RBP20.39■□□□□ 0.85
SHH-201ENST00000297261 EPRSP07814 1512 aaKnown RBP20.38■□□□□ 0.85
SHH-201ENST00000297261 UPF2Q9HAU5 1272 aaKnown RBP20.37■□□□□ 0.85
SHH-201ENST00000297261 CARD11Q9BXL7 1154 aa20.35■□□□□ 0.85
SHH-201ENST00000297261 L3MBTL2Q969R5 705 aa20.34■□□□□ 0.85
SHH-201ENST00000297261 DCAF11Q8TEB1 546 aa20.33■□□□□ 0.85
SHH-201ENST00000297261 HSP90AA1P07900 732 aaKnown RBP20.33■□□□□ 0.84
SHH-201ENST00000297261 CCER2I3L3R5 266 aa20.32■□□□□ 0.84
SHH-201ENST00000297261 RSPH4AQ5TD94 716 aa20.32■□□□□ 0.84
SHH-201ENST00000297261 PPM1GO15355 546 aaPredicted RBP20.32■□□□□ 0.84
SHH-201ENST00000297261 ESF1Q9H501 851 aaKnown RBP20.31■□□□□ 0.84
SHH-201ENST00000297261 HSPA5P11021 654 aaKnown RBP20.31■□□□□ 0.84
SHH-201ENST00000297261 OSCARQ8IYS5 282 aa20.3■□□□□ 0.84
SHH-201ENST00000297261 UACAQ9BZF9 1416 aa20.3■□□□□ 0.84
SHH-201ENST00000297261 ANP32BQ92688 251 aaKnown RBP20.3■□□□□ 0.84
SHH-201ENST00000297261 SUPT6HQ7KZ85 1726 aaKnown RBP20.29■□□□□ 0.84
SHH-201ENST00000297261 STAG3Q9UJ98 1225 aa20.29■□□□□ 0.84
SHH-201ENST00000297261 TROQ12816 1431 aaPredicted RBP20.29■□□□□ 0.84
SHH-201ENST00000297261 DDRGK1Q96HY6 314 aa20.29■□□□□ 0.84
SHH-201ENST00000297261 PLB1Q6P1J6 1458 aa20.29■□□□□ 0.84
SHH-201ENST00000297261 CTTNBP2Q8WZ74 1663 aa20.29■□□□□ 0.84
SHH-201ENST00000297261 ABCA5Q8WWZ7 1642 aa20.26■□□□□ 0.83
SHH-201ENST00000297261 MIA2Q96PC5 1412 aa20.26■□□□□ 0.83
SHH-201ENST00000297261 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.26■□□□□ 0.83
SHH-201ENST00000297261 ADAMTS12P58397 1594 aa20.26■□□□□ 0.83
SHH-201ENST00000297261 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.25■□□□□ 0.83
SHH-201ENST00000297261 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.24■□□□□ 0.83
SHH-201ENST00000297261 SPAG9O60271 1321 aaKnown RBP20.24■□□□□ 0.83
SHH-201ENST00000297261 WDR62O43379 1518 aa20.24■□□□□ 0.83
SHH-201ENST00000297261 SENP3Q9H4L4 574 aaPredicted RBP20.23■□□□□ 0.83
SHH-201ENST00000297261 HFM1A2PYH4 1435 aa20.23■□□□□ 0.83
SHH-201ENST00000297261 ERICH6BQ5W0A0 696 aa20.2■□□□□ 0.82
SHH-201ENST00000297261 PLPPR3Q6T4P5 718 aa20.19■□□□□ 0.82
SHH-201ENST00000297261 KANK1Q14678 1352 aa20.19■□□□□ 0.82
SHH-201ENST00000297261 EIF4G3O43432 1585 aaKnown RBP20.18■□□□□ 0.82
SHH-201ENST00000297261 KIF3BO15066 747 aa20.17■□□□□ 0.82
SHH-201ENST00000297261 WDR43Q15061 677 aaKnown RBP eCLIP20.17■□□□□ 0.82
SHH-201ENST00000297261 GGT6Q6P531 493 aa20.17■□□□□ 0.82
SHH-201ENST00000297261 TARBP1Q13395 1621 aaKnown RBP20.17■□□□□ 0.82
SHH-201ENST00000297261 KIF15Q9NS87 1388 aa20.17■□□□□ 0.82
SHH-201ENST00000297261 NAIPQ13075 1403 aa20.16■□□□□ 0.82
SHH-201ENST00000297261 ANKRD50Q9ULJ7 1429 aa20.15■□□□□ 0.82
SHH-201ENST00000297261 RGS3P49796 1198 aa20.14■□□□□ 0.82
SHH-201ENST00000297261 PBRM1Q86U86 1689 aa20.14■□□□□ 0.81
SHH-201ENST00000297261 DAPK1P53355 1430 aa20.14■□□□□ 0.81
SHH-201ENST00000297261 PTPN23Q9H3S7 1636 aa20.13■□□□□ 0.81
SHH-201ENST00000297261 THOC2Q8NI27 1593 aaKnown RBP20.13■□□□□ 0.81
SHH-201ENST00000297261 CYB5RLQ6IPT4 315 aa20.12■□□□□ 0.81
SHH-201ENST00000297261 UGGT2Q9NYU1 1516 aa20.11■□□□□ 0.81
SHH-201ENST00000297261 BECN1Q14457 450 aa20.11■□□□□ 0.81
SHH-201ENST00000297261 ARHGAP5Q13017 1502 aa20.1■□□□□ 0.81
SHH-201ENST00000297261 NAP1L5Q96NT1 182 aaPredicted RBP20.1■□□□□ 0.81
SHH-201ENST00000297261 ARHGEF11O15085 1522 aa20.08■□□□□ 0.8
SHH-201ENST00000297261 TRIM44Q96DX7 344 aaPredicted RBP20.07■□□□□ 0.8
SHH-201ENST00000297261 NUP153P49790 1475 aaKnown RBP20.07■□□□□ 0.8
SHH-201ENST00000297261 CFAP43Q8NDM7 1665 aa20.07■□□□□ 0.8
SHH-201ENST00000297261 C9orf84Q5VXU9 1444 aa20.06■□□□□ 0.8
SHH-201ENST00000297261 KIAA0556O60303 1618 aa20.06■□□□□ 0.8
SHH-201ENST00000297261 ROCK2O75116 1388 aaKnown RBP20.06■□□□□ 0.8
SHH-201ENST00000297261 IPO9Q96P70 1041 aaKnown RBP20.05■□□□□ 0.8
SHH-201ENST00000297261 AFAP1Q8N556 730 aa20.05■□□□□ 0.8
SHH-201ENST00000297261 PTPRKQ15262 1439 aa20.04■□□□□ 0.8
SHH-201ENST00000297261 RAPGEF6Q8TEU7 1601 aa20.04■□□□□ 0.8
SHH-201ENST00000297261 CCDC144AA2RUR9 1427 aa20.04■□□□□ 0.8
SHH-201ENST00000297261 ABCC5O15440 1437 aa20.04■□□□□ 0.8
SHH-201ENST00000297261 ARID4BQ4LE39 1312 aaPredicted RBP20.03■□□□□ 0.8
SHH-201ENST00000297261 CAMSAP2Q08AD1 1489 aa20.02■□□□□ 0.8
SHH-201ENST00000297261 SAMD9Q5K651 1589 aa20.01■□□□□ 0.79
SHH-201ENST00000297261 DISP1Q96F81 1524 aa20.01■□□□□ 0.79
SHH-201ENST00000297261 MLECQ14165 292 aa20.01■□□□□ 0.79
SHH-201ENST00000297261 ROCK1Q13464 1354 aa20■□□□□ 0.79
SHH-201ENST00000297261 FANCIQ9NVI1 1328 aa19.99■□□□□ 0.79
SHH-201ENST00000297261 CDCA8Q53HL2 280 aa19.98■□□□□ 0.79
SHH-201ENST00000297261 TMF1P82094 1093 aa19.98■□□□□ 0.79
SHH-201ENST00000297261 NUP160Q12769 1436 aa19.98■□□□□ 0.79
SHH-201ENST00000297261 KNSTRNQ9Y448 316 aa19.96■□□□□ 0.79
SHH-201ENST00000297261 ATP10BO94823 1461 aa19.96■□□□□ 0.79
SHH-201ENST00000297261 KIF14Q15058 1648 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms