RNA–Protein interactions for RNA: ENST00000291552.8

U2AF1-201, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene U2AF1, Length 962 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-201ENST00000291552 ZFYVE16Q7Z3T8 1539 aa41.27■■■■■ 4.2
U2AF1-201ENST00000291552 SCAPERQ9BY12 1400 aa41.27■■■■■ 4.2
U2AF1-201ENST00000291552 YEATS2Q9ULM3 1422 aa41.26■■■■■ 4.19
U2AF1-201ENST00000291552 PTPRMP28827 1452 aa41.24■■■■■ 4.19
U2AF1-201ENST00000291552 CCDC18Q5T9S5 1454 aa41.24■■■■■ 4.19
U2AF1-201ENST00000291552 CLIP1P30622 1438 aa41.24■■■■■ 4.19
U2AF1-201ENST00000291552 CDC42BPBQ9Y5S2 1711 aa41.21■■■■■ 4.19
U2AF1-201ENST00000291552 MAGI2Q86UL8 1455 aa41.21■■■■■ 4.19
U2AF1-201ENST00000291552 FYCO1Q9BQS8 1478 aa41.2■■■■■ 4.19
U2AF1-201ENST00000291552 ARHGAP5Q13017 1502 aa41.18■■■■■ 4.18
U2AF1-201ENST00000291552 ARID4BQ4LE39 1312 aaPredicted RBP41.18■■■■■ 4.18
U2AF1-201ENST00000291552 EFCAB2Q5VUJ9 269 aa41.16■■■■■ 4.18
U2AF1-201ENST00000291552 PREX2Q70Z35 1606 aa41.15■■■■■ 4.18
U2AF1-201ENST00000291552 RIMS1Q86UR5 1692 aaKnown RBP41.13■■■■■ 4.18
U2AF1-201ENST00000291552 KDM5CP41229 1560 aa41.08■■■■■ 4.17
U2AF1-201ENST00000291552 CDC42BPAQ5VT25 1732 aa41.07■■■■■ 4.17
U2AF1-201ENST00000291552 ZNF518AQ6AHZ1 1483 aa41.03■■■■■ 4.16
U2AF1-201ENST00000291552 ABCC1P33527 1531 aa41■■■■■ 4.15
U2AF1-201ENST00000291552 ATP10AO60312 1499 aa40.99■■■■■ 4.15
U2AF1-201ENST00000291552 ITSN2Q9NZM3 1697 aa40.98■■■■■ 4.15
U2AF1-201ENST00000291552 FER1L4A9Z1Z3 1794 aa40.97■■■■■ 4.15
U2AF1-201ENST00000291552 C9orf84Q5VXU9 1444 aa40.96■■■■■ 4.15
U2AF1-201ENST00000291552 ARHGEF12Q9NZN5 1544 aa40.96■■■■■ 4.15
U2AF1-201ENST00000291552 AFAP1Q8N556 730 aa40.93■■■■■ 4.14
U2AF1-201ENST00000291552 DIP2CQ9Y2E4 1556 aa40.92■■■■■ 4.14
U2AF1-201ENST00000291552 ABCA6Q8N139 1617 aa40.89■■■■■ 4.14
U2AF1-201ENST00000291552 TRAPPC8Q9Y2L5 1435 aa40.88■■■■■ 4.13
U2AF1-201ENST00000291552 LMTK3Q96Q04 1460 aa40.85■■■■■ 4.13
U2AF1-201ENST00000291552 SAMD9LQ8IVG5 1584 aa40.84■■■■■ 4.13
U2AF1-201ENST00000291552 MLECQ14165 292 aa40.84■■■■■ 4.13
U2AF1-201ENST00000291552 CEP162Q5TB80 1403 aa40.84■■■■■ 4.13
U2AF1-201ENST00000291552 MLH3Q9UHC1 1453 aa40.83■■■■■ 4.13
U2AF1-201ENST00000291552 GPATCH8Q9UKJ3 1502 aaKnown RBP40.82■■■■■ 4.12
U2AF1-201ENST00000291552 REREQ9P2R6 1566 aa40.82■■■■■ 4.12
U2AF1-201ENST00000291552 KIDINS220Q9ULH0 1771 aa40.79■■■■■ 4.12
U2AF1-201ENST00000291552 SYCP2Q9BX26 1530 aa40.74■■■■■ 4.11
U2AF1-201ENST00000291552 PLPPR3Q6T4P5 718 aa40.69■■■■■ 4.1
U2AF1-201ENST00000291552 MTUS2Q5JR59 1369 aa40.69■■■■■ 4.1
U2AF1-201ENST00000291552 EHBP1L1Q8N3D4 1523 aa40.67■■■■■ 4.1
U2AF1-201ENST00000291552 MYT1LQ9UL68 1186 aa40.67■■■■■ 4.1
U2AF1-201ENST00000291552 ILDR1Q86SU0 546 aaPredicted RBP40.66■■■■■ 4.1
U2AF1-201ENST00000291552 AGLP35573 1532 aa40.66■■■■■ 4.1
U2AF1-201ENST00000291552 TIAM1Q13009 1591 aa40.65■■■■■ 4.1
U2AF1-201ENST00000291552 ZNF777Q9ULD5 760 aaPredicted RBP40.65■■■■■ 4.1
U2AF1-201ENST00000291552 CCNB3Q8WWL7 1395 aa40.62■■■■■ 4.09
U2AF1-201ENST00000291552 KIAA1107Q9UPP5 1409 aa40.58■■■■■ 4.09
U2AF1-201ENST00000291552 INO80Q9ULG1 1556 aaPredicted RBP40.57■■■■■ 4.08
U2AF1-201ENST00000291552 PLEKHH2Q8IVE3 1493 aa40.56■■■■■ 4.08
U2AF1-201ENST00000291552 PREX1Q8TCU6 1659 aa40.56■■■■■ 4.08
U2AF1-201ENST00000291552 HNRNPMP52272 730 aaKnown RBP eCLIP40.55■■■■■ 4.08
U2AF1-201ENST00000291552 CFDP1Q9UEE9 299 aaPredicted RBP40.55■■■■■ 4.08
U2AF1-201ENST00000291552 HSPA2P54652 639 aa40.54■■■■■ 4.08
U2AF1-201ENST00000291552 ATP7AQ04656 1500 aa40.52■■■■■ 4.08
U2AF1-201ENST00000291552 CEBPAP49715 358 aaPredicted RBP40.52■■■■■ 4.08
U2AF1-201ENST00000291552 C3P01024 1663 aa40.51■■■■■ 4.08
U2AF1-201ENST00000291552 LOC105371045A0A1W2PR82 267 aa40.49■■■■■ 4.07
U2AF1-201ENST00000291552 SPAG9O60271 1321 aaKnown RBP40.47■■■■■ 4.07
U2AF1-201ENST00000291552 SUPT6HQ7KZ85 1726 aaKnown RBP40.46■■■■■ 4.07
U2AF1-201ENST00000291552 PLXNC1O60486 1568 aa40.44■■■■■ 4.06
U2AF1-201ENST00000291552 ZNF644Q9H582 1327 aaPredicted RBP40.43■■■■■ 4.06
U2AF1-201ENST00000291552 SETD1BQ9UPS6 1966 aaKnown RBP40.43■■■■■ 4.06
U2AF1-201ENST00000291552 NCOA2Q15596 1464 aa40.4■■■■■ 4.06
U2AF1-201ENST00000291552 MBD5Q9P267 1494 aa40.4■■■■■ 4.06
U2AF1-201ENST00000291552 VPS8Q8N3P4 1428 aa40.4■■■■■ 4.06
U2AF1-201ENST00000291552 ADGBQ8N7X0 1667 aa40.34■■■■■ 4.05
U2AF1-201ENST00000291552 MROH2AA6NES4 1674 aa40.34■■■■■ 4.05
U2AF1-201ENST00000291552 A2MP01023 1474 aa40.33■■■■■ 4.05
U2AF1-201ENST00000291552 CNTLNQ9NXG0 1405 aa40.31■■■■■ 4.04
U2AF1-201ENST00000291552 STRCQ7RTU9 1775 aa40.28■■■■■ 4.04
U2AF1-201ENST00000291552 CAMSAP2Q08AD1 1489 aa40.28■■■■■ 4.04
U2AF1-201ENST00000291552 UHRF1BP1Q6BDS2 1440 aa40.28■■■■■ 4.04
U2AF1-201ENST00000291552 LRRC9Q6ZRR7 1453 aa40.26■■■■■ 4.03
U2AF1-201ENST00000291552 CLTCQ00610 1675 aaKnown RBP40.25■■■■■ 4.03
U2AF1-201ENST00000291552 ESF1Q9H501 851 aaKnown RBP40.23■■■■■ 4.03
U2AF1-201ENST00000291552 RTEL1-TNFRSF6BF6WH68 1400 aa40.2■■■■■ 4.03
U2AF1-201ENST00000291552 CCDC141Q6ZP82 1450 aa40.19■■■■■ 4.03
U2AF1-201ENST00000291552 MAP3K1Q13233 1512 aa40.17■■■■■ 4.02
U2AF1-201ENST00000291552 ARHGEF5Q12774 1597 aa40.14■■■■■ 4.02
U2AF1-201ENST00000291552 FBXO41Q8TF61 875 aa40.14■■■■■ 4.02
U2AF1-201ENST00000291552 ZMYM3Q14202 1370 aa40.12■■■■■ 4.01
U2AF1-201ENST00000291552 NPATQ14207 1427 aa40.11■■■■■ 4.01
U2AF1-201ENST00000291552 KANK4Q5T7N3 995 aaPredicted RBP40.09■■■■■ 4.01
U2AF1-201ENST00000291552 DHX29Q7Z478 1369 aaKnown RBP40.07■■■■■ 4
U2AF1-201ENST00000291552 GGT6Q6P531 493 aa40.05■■■■■ 4
U2AF1-201ENST00000291552 MYO3AQ8NEV4 1616 aa40.02■■■■■ 4
U2AF1-201ENST00000291552 PTPRKQ15262 1439 aa40.01■■■■■ 4
U2AF1-201ENST00000291552 ZNF142P52746 1687 aaPredicted RBP40■■■■□ 3.99
U2AF1-201ENST00000291552 RSPH4AQ5TD94 716 aa39.98■■■■□ 3.99
U2AF1-201ENST00000291552 NCOA1Q15788 1441 aa39.96■■■■□ 3.99
U2AF1-201ENST00000291552 MYOM3Q5VTT5 1437 aa39.96■■■■□ 3.99
U2AF1-201ENST00000291552 MAST1Q9Y2H9 1570 aa39.96■■■■□ 3.99
U2AF1-201ENST00000291552 PPP6R1Q9UPN7 881 aa39.94■■■■□ 3.98
U2AF1-201ENST00000291552 CAMSAP1Q5T5Y3 1602 aa39.93■■■■□ 3.98
U2AF1-201ENST00000291552 PTPRTO14522 1441 aa39.91■■■■□ 3.98
U2AF1-201ENST00000291552 MIA2Q96PC5 1412 aa39.91■■■■□ 3.98
U2AF1-201ENST00000291552 CERKQ8TCT0 537 aa39.9■■■■□ 3.98
U2AF1-201ENST00000291552 DMRT2Q9Y5R5 561 aa39.9■■■■□ 3.98
U2AF1-201ENST00000291552 CEP170BQ9Y4F5 1589 aaPredicted RBP39.89■■■■□ 3.98
U2AF1-201ENST00000291552 KDM5DQ9BY66 1539 aa39.88■■■■□ 3.97
U2AF1-201ENST00000291552 FAM135AQ9P2D6 1515 aa39.88■■■■□ 3.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms