RNA–Protein interactions for RNA: ENST00000288022.1

PDF-201, Transcript of peptide deformylase, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDF, Length 1,158 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDF-201ENST00000288022 CDC42BPBQ9Y5S2 1711 aa39.79■■■■□ 3.96
PDF-201ENST00000288022 TIAM1Q13009 1591 aa39.77■■■■□ 3.96
PDF-201ENST00000288022 SCAPERQ9BY12 1400 aa39.77■■■■□ 3.96
PDF-201ENST00000288022 CDC42BPAQ5VT25 1732 aa39.77■■■■□ 3.96
PDF-201ENST00000288022 RICTORQ6R327 1708 aa39.77■■■■□ 3.96
PDF-201ENST00000288022 CCNB3Q8WWL7 1395 aa39.7■■■■□ 3.95
PDF-201ENST00000288022 AEBP2Q6ZN18 517 aaPredicted RBP39.68■■■■□ 3.94
PDF-201ENST00000288022 POGZQ7Z3K3 1410 aa39.67■■■■□ 3.94
PDF-201ENST00000288022 GPATCH8Q9UKJ3 1502 aaKnown RBP39.67■■■■□ 3.94
PDF-201ENST00000288022 ZNF777Q9ULD5 760 aaPredicted RBP39.63■■■■□ 3.93
PDF-201ENST00000288022 SUPT6HQ7KZ85 1726 aaKnown RBP39.62■■■■□ 3.93
PDF-201ENST00000288022 ZMYM4Q5VZL5 1548 aa39.61■■■■□ 3.93
PDF-201ENST00000288022 MAP3K1Q13233 1512 aa39.6■■■■□ 3.93
PDF-201ENST00000288022 APLP2Q06481 763 aa39.59■■■■□ 3.93
PDF-201ENST00000288022 CFDP1Q9UEE9 299 aaPredicted RBP39.59■■■■□ 3.93
PDF-201ENST00000288022 LRRC9Q6ZRR7 1453 aa39.59■■■■□ 3.93
PDF-201ENST00000288022 ABCC1P33527 1531 aa39.58■■■■□ 3.93
PDF-201ENST00000288022 KDM4FA0A1W2PPD8 638 aa39.57■■■■□ 3.93
PDF-201ENST00000288022 ZNF518AQ6AHZ1 1483 aa39.56■■■■□ 3.92
PDF-201ENST00000288022 ARHGEF40Q8TER5 1519 aa39.56■■■■□ 3.92
PDF-201ENST00000288022 NCOA2Q15596 1464 aa39.56■■■■□ 3.92
PDF-201ENST00000288022 ITSN2Q9NZM3 1697 aa39.55■■■■□ 3.92
PDF-201ENST00000288022 ZFYVE16Q7Z3T8 1539 aa39.54■■■■□ 3.92
PDF-201ENST00000288022 SAMD9LQ8IVG5 1584 aa39.54■■■■□ 3.92
PDF-201ENST00000288022 MAGI2Q86UL8 1455 aa39.52■■■■□ 3.92
PDF-201ENST00000288022 KANK4Q5T7N3 995 aaPredicted RBP39.51■■■■□ 3.92
PDF-201ENST00000288022 AFAP1Q8N556 730 aa39.51■■■■□ 3.92
PDF-201ENST00000288022 ARHGEF12Q9NZN5 1544 aa39.5■■■■□ 3.91
PDF-201ENST00000288022 YEATS2Q9ULM3 1422 aa39.48■■■■□ 3.91
PDF-201ENST00000288022 MYT1LQ9UL68 1186 aa39.47■■■■□ 3.91
PDF-201ENST00000288022 TRAPPC8Q9Y2L5 1435 aa39.47■■■■□ 3.91
PDF-201ENST00000288022 KDM5CP41229 1560 aa39.46■■■■□ 3.91
PDF-201ENST00000288022 SYCP2Q9BX26 1530 aa39.45■■■■□ 3.91
PDF-201ENST00000288022 PLEKHH2Q8IVE3 1493 aa39.43■■■■□ 3.9
PDF-201ENST00000288022 ARID4BQ4LE39 1312 aaPredicted RBP39.43■■■■□ 3.9
PDF-201ENST00000288022 HECW2Q9P2P5 1572 aa39.41■■■■□ 3.9
PDF-201ENST00000288022 HNRNPMP52272 730 aaKnown RBP eCLIP39.4■■■■□ 3.9
PDF-201ENST00000288022 KIAA1107Q9UPP5 1409 aa39.37■■■■□ 3.89
PDF-201ENST00000288022 ZNF644Q9H582 1327 aaPredicted RBP39.36■■■■□ 3.89
PDF-201ENST00000288022 ATP10AO60312 1499 aa39.33■■■■□ 3.89
PDF-201ENST00000288022 MLH3Q9UHC1 1453 aa39.33■■■■□ 3.89
PDF-201ENST00000288022 C9orf84Q5VXU9 1444 aa39.29■■■■□ 3.88
PDF-201ENST00000288022 CAMSAP2Q08AD1 1489 aa39.27■■■■□ 3.88
PDF-201ENST00000288022 BCORL1Q5H9F3 1711 aa39.26■■■■□ 3.88
PDF-201ENST00000288022 DIP2CQ9Y2E4 1556 aa39.26■■■■□ 3.88
PDF-201ENST00000288022 SIGLEC1Q9BZZ2 1709 aa39.26■■■■□ 3.87
PDF-201ENST00000288022 ABCA6Q8N139 1617 aa39.25■■■■□ 3.87
PDF-201ENST00000288022 SPAG9O60271 1321 aaKnown RBP39.25■■■■□ 3.87
PDF-201ENST00000288022 KIDINS220Q9ULH0 1771 aa39.23■■■■□ 3.87
PDF-201ENST00000288022 MYOM3Q5VTT5 1437 aa39.23■■■■□ 3.87
PDF-201ENST00000288022 ADAMTSL3P82987 1691 aa39.21■■■■□ 3.87
PDF-201ENST00000288022 MBD5Q9P267 1494 aa39.2■■■■□ 3.87
PDF-201ENST00000288022 ATP7AQ04656 1500 aa39.17■■■■□ 3.86
PDF-201ENST00000288022 MLECQ14165 292 aa39.16■■■■□ 3.86
PDF-201ENST00000288022 INO80Q9ULG1 1556 aaPredicted RBP39.15■■■■□ 3.86
PDF-201ENST00000288022 MIA2Q96PC5 1412 aa39.14■■■■□ 3.86
PDF-201ENST00000288022 REREQ9P2R6 1566 aa39.13■■■■□ 3.85
PDF-201ENST00000288022 MADDQ8WXG6 1647 aa39.13■■■■□ 3.85
PDF-201ENST00000288022 CCDC141Q6ZP82 1450 aa39.11■■■■□ 3.85
PDF-201ENST00000288022 RSPH4AQ5TD94 716 aa39.08■■■■□ 3.85
PDF-201ENST00000288022 ARHGEF5Q12774 1597 aa39.07■■■■□ 3.84
PDF-201ENST00000288022 RIMS1Q86UR5 1692 aaKnown RBP39.03■■■■□ 3.84
PDF-201ENST00000288022 PTPRMP28827 1452 aa39.02■■■■□ 3.84
PDF-201ENST00000288022 RTEL1-TNFRSF6BF6WH68 1400 aa39.01■■■■□ 3.84
PDF-201ENST00000288022 PTPN23Q9H3S7 1636 aa39■■■■□ 3.83
PDF-201ENST00000288022 AGLP35573 1532 aa39■■■■□ 3.83
PDF-201ENST00000288022 FER1L4A9Z1Z3 1794 aa38.99■■■■□ 3.83
PDF-201ENST00000288022 FGD6Q6ZV73 1430 aa38.98■■■■□ 3.83
PDF-201ENST00000288022 TSPY4P0CV99 314 aa38.98■■■■□ 3.83
PDF-201ENST00000288022 TSPY10P0CW01 314 aa38.98■■■■□ 3.83
PDF-201ENST00000288022 A2MP01023 1474 aa38.98■■■■□ 3.83
PDF-201ENST00000288022 ADGBQ8N7X0 1667 aa38.97■■■■□ 3.83
PDF-201ENST00000288022 PLXNC1O60486 1568 aa38.91■■■■□ 3.82
PDF-201ENST00000288022 PPARGC1BQ86YN6 1023 aaKnown RBP38.9■■■■□ 3.82
PDF-201ENST00000288022 PLPPR3Q6T4P5 718 aa38.89■■■■□ 3.82
PDF-201ENST00000288022 TCOF1Q13428 1488 aaKnown RBP38.88■■■■□ 3.81
PDF-201ENST00000288022 MAST1Q9Y2H9 1570 aa38.85■■■■□ 3.81
PDF-201ENST00000288022 ESF1Q9H501 851 aaKnown RBP38.84■■■■□ 3.81
PDF-201ENST00000288022 DHX29Q7Z478 1369 aaKnown RBP38.82■■■■□ 3.8
PDF-201ENST00000288022 CROCC2H7BZ55 1655 aa38.79■■■■□ 3.8
PDF-201ENST00000288022 FAM50AQ14320 339 aaKnown RBP38.79■■■■□ 3.8
PDF-201ENST00000288022 DNMT1P26358 1616 aaKnown RBP38.78■■■■□ 3.8
PDF-201ENST00000288022 ABCC5O15440 1437 aa38.78■■■■□ 3.8
PDF-201ENST00000288022 DAPK1P53355 1430 aa38.77■■■■□ 3.8
PDF-201ENST00000288022 GGT6Q6P531 493 aa38.75■■■■□ 3.79
PDF-201ENST00000288022 SHANK2Q9UPX8 1470 aa38.74■■■■□ 3.79
PDF-201ENST00000288022 CEBPAP49715 358 aaPredicted RBP38.7■■■■□ 3.79
PDF-201ENST00000288022 KIF3BO15066 747 aa38.69■■■■□ 3.78
PDF-201ENST00000288022 CNTLNQ9NXG0 1405 aa38.69■■■■□ 3.78
PDF-201ENST00000288022 CHIC2Q9UKJ5 165 aa38.64■■■■□ 3.78
PDF-201ENST00000288022 C3P01024 1663 aa38.62■■■■□ 3.77
PDF-201ENST00000288022 CLTCQ00610 1675 aaKnown RBP38.62■■■■□ 3.77
PDF-201ENST00000288022 KIF15Q9NS87 1388 aa38.61■■■■□ 3.77
PDF-201ENST00000288022 RRP7BPQ9NSQ0 103 aa38.61■■■■□ 3.77
PDF-201ENST00000288022 DUOX2Q9NRD8 1548 aa38.6■■■■□ 3.77
PDF-201ENST00000288022 MROH2AA6NES4 1674 aa38.59■■■■□ 3.77
PDF-201ENST00000288022 PPP6R1Q9UPN7 881 aa38.58■■■■□ 3.77
PDF-201ENST00000288022 ANKRD30AQ9BXX3 1397 aa38.57■■■■□ 3.76
PDF-201ENST00000288022 EIF2AK4Q9P2K8 1649 aaKnown RBP38.56■■■■□ 3.76
PDF-201ENST00000288022 ZMYM3Q14202 1370 aa38.53■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms