RNA–Protein interactions for RNA: ENST00000275233.11

SHPRH-201, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHPRH, Length 6,649 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-201ENST00000275233 CCDC9Q9Y3X0 531 aaKnown RBP15.2■□□□□ 0.02
SHPRH-201ENST00000275233 GOLGA6L4A6NEF3 574 aa15.19■□□□□ 0.02
SHPRH-201ENST00000275233 CUX2O14529 1486 aa15.19■□□□□ 0.02
SHPRH-201ENST00000275233 CHMP4BQ9H444 224 aaKnown RBP15.19■□□□□ 0.02
SHPRH-201ENST00000275233 MS4A1P11836 297 aa15.18■□□□□ 0.02
SHPRH-201ENST00000275233 PKD2Q13563 968 aa15.17■□□□□ 0.02
SHPRH-201ENST00000275233 HSCBQ8IWL3 235 aa15.17■□□□□ 0.02
SHPRH-201ENST00000275233 CARMIL1Q5VZK9 1371 aa15.17■□□□□ 0.02
SHPRH-201ENST00000275233 HSPA5P11021 654 aaKnown RBP15.16■□□□□ 0.02
SHPRH-201ENST00000275233 HDGFL2Q7Z4V5 671 aaPredicted RBP15.16■□□□□ 0.02
SHPRH-201ENST00000275233 NOP58Q9Y2X3 529 aaKnown RBP15.16■□□□□ 0.02
SHPRH-201ENST00000275233 GOLGA6L6A8MZA4 724 aa15.15■□□□□ 0.02
SHPRH-201ENST00000275233 GNL2Q13823 731 aaKnown RBP15.14■□□□□ 0.01
SHPRH-201ENST00000275233 U2AF1L5P0DN76 240 aaPredicted RBP15.13■□□□□ 0.01
SHPRH-201ENST00000275233 U2AF1Q01081 240 aaKnown RBP eCLIP15.13■□□□□ 0.01
SHPRH-201ENST00000275233 CHMP3Q9Y3E7 222 aa15.13■□□□□ 0.01
SHPRH-201ENST00000275233 MCCP23508 829 aa15.12■□□□□ 0.01
SHPRH-201ENST00000275233 NUTM2FA1L443 756 aa15.12■□□□□ 0.01
SHPRH-201ENST00000275233 DRC7Q8IY82 874 aa15.12■□□□□ 0.01
SHPRH-201ENST00000275233 SOGA1O94964 1423 aa15.12■□□□□ 0.01
SHPRH-201ENST00000275233 FHAD1B1AJZ9 1412 aa15.11■□□□□ 0.01
SHPRH-201ENST00000275233 ITPRIPQ8IWB1 547 aa15.11■□□□□ 0.01
SHPRH-201ENST00000275233 NACADO15069 1562 aa15.1■□□□□ 0.01
SHPRH-201ENST00000275233 ROCK2O75116 1388 aaKnown RBP15.1■□□□□ 0.01
SHPRH-201ENST00000275233 LTV1Q96GA3 475 aaPredicted RBP15.08■□□□□ 0
SHPRH-201ENST00000275233 ERICH6BQ5W0A0 696 aa15.08■□□□□ 0
SHPRH-201ENST00000275233 ARHGAP35Q9NRY4 1499 aa15.07■□□□□ 0
SHPRH-201ENST00000275233 KTN1Q86UP2 1357 aaKnown RBP15.07■□□□□ 0
SHPRH-201ENST00000275233 KIAA1211Q6ZU35 1233 aa15.07■□□□□ 0
SHPRH-201ENST00000275233 KANK4Q5T7N3 995 aaPredicted RBP15.07■□□□□ 0
SHPRH-201ENST00000275233 CCDC146Q8IYE0 955 aa15.06■□□□□ 0
SHPRH-201ENST00000275233 HNRNPMP52272 730 aaKnown RBP eCLIP15.05■□□□□ -02e-6■■■■■ 31.6
SHPRH-201ENST00000275233 SETD5Q9C0A6 1442 aa15.05■□□□□ -0
SHPRH-201ENST00000275233 CECR2Q9BXF3 1484 aa15.04■□□□□ -0
SHPRH-201ENST00000275233 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.04■□□□□ -0
SHPRH-201ENST00000275233 KIF3BO15066 747 aa15.04■□□□□ -0
SHPRH-201ENST00000275233 GORABQ5T7V8 394 aa15.04■□□□□ -0
SHPRH-201ENST00000275233 NRDCO43847 1150 aa15.04■□□□□ -0
SHPRH-201ENST00000275233 TAF7LQ5H9L4 462 aa15.04■□□□□ -0
SHPRH-201ENST00000275233 SLC4A10Q6U841 1118 aa15.03■□□□□ -0
SHPRH-201ENST00000275233 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.03■□□□□ -05e-7■■□□□ 12
SHPRH-201ENST00000275233 NUP155O75694 1391 aa15.03■□□□□ -0
SHPRH-201ENST00000275233 ABCC8Q09428 1581 aa15.03■□□□□ -0
SHPRH-201ENST00000275233 TMX4Q9H1E5 349 aaPredicted RBP15.02■□□□□ -0
SHPRH-201ENST00000275233 IPO8O15397 1037 aaKnown RBP15.02■□□□□ -0
SHPRH-201ENST00000275233 MPHOSPH9Q99550 1183 aa15.02□□□□□ -0.01
SHPRH-201ENST00000275233 GZF1Q9H116 711 aaPredicted RBP15.02□□□□□ -0.01
SHPRH-201ENST00000275233 NGDNQ8NEJ9 315 aaKnown RBP15.01□□□□□ -0.01
SHPRH-201ENST00000275233 TRIM6-TRIM34B2RNG4 842 aa15.01□□□□□ -0.01
SHPRH-201ENST00000275233 NOL8Q76FK4 1167 aaKnown RBP15.01□□□□□ -0.01
SHPRH-201ENST00000275233 BAZ1AQ9NRL2 1556 aaPredicted RBP15□□□□□ -0.01
SHPRH-201ENST00000275233 TDRD9Q8NDG6 1382 aaKnown RBP15□□□□□ -0.01
SHPRH-201ENST00000275233 G3V3G9 751 aa15□□□□□ -0.01
SHPRH-201ENST00000275233 DCAF8Q5TAQ9 597 aa15□□□□□ -0.01
SHPRH-201ENST00000275233 CARMIL2Q6F5E8 1435 aa15□□□□□ -0.01
SHPRH-201ENST00000275233 PDE4CQ08493 712 aa15□□□□□ -0.01
SHPRH-201ENST00000275233 HSP90B1P14625 803 aaKnown RBP14.99□□□□□ -0.01
SHPRH-201ENST00000275233 MSNP26038 577 aaKnown RBP14.99□□□□□ -0.01
SHPRH-201ENST00000275233 CLUAP1Q96AJ1 413 aa14.99□□□□□ -0.01
SHPRH-201ENST00000275233 SLKQ9H2G2 1235 aaPredicted RBP14.98□□□□□ -0.01
SHPRH-201ENST00000275233 RCAN3Q9UKA8 241 aa14.98□□□□□ -0.01
SHPRH-201ENST00000275233 SPAG9O60271 1321 aaKnown RBP14.98□□□□□ -0.01
SHPRH-201ENST00000275233 FOXD4L1Q9NU39 408 aa14.98□□□□□ -0.01
SHPRH-201ENST00000275233 STK31Q9BXU1 1019 aa14.98□□□□□ -0.01
SHPRH-201ENST00000275233 SMC4Q9NTJ3 1288 aa14.98□□□□□ -0.01
SHPRH-201ENST00000275233 CHAF1AQ13111 956 aaPredicted RBP14.97□□□□□ -0.01
SHPRH-201ENST00000275233 EFCAB2Q5VUJ9 269 aa14.97□□□□□ -0.01
SHPRH-201ENST00000275233 MFAP1P55081 439 aaKnown RBP14.97□□□□□ -0.01
SHPRH-201ENST00000275233 AMPHP49418 695 aa14.97□□□□□ -0.01
SHPRH-201ENST00000275233 ARID3AQ99856 593 aa14.97□□□□□ -0.01
SHPRH-201ENST00000275233 EID1Q9Y6B2 187 aa14.97□□□□□ -0.01
SHPRH-201ENST00000275233 ANO8Q9HCE9 1232 aaPredicted RBP14.97□□□□□ -0.01
SHPRH-201ENST00000275233 WASHC2CQ9Y4E1 1318 aa14.96□□□□□ -0.01
SHPRH-201ENST00000275233 CALD1Q05682 793 aaKnown RBP14.96□□□□□ -0.02
SHPRH-201ENST00000275233 TRAK1Q9UPV9 953 aa14.95□□□□□ -0.02
SHPRH-201ENST00000275233 CREBRFQ8IUR6 639 aa14.94□□□□□ -0.02
SHPRH-201ENST00000275233 RWDD1Q9H446 243 aaPredicted RBP14.94□□□□□ -0.02
SHPRH-201ENST00000275233 RRP7AQ9Y3A4 280 aaKnown RBP14.93□□□□□ -0.02
SHPRH-201ENST00000275233 RAB3GAP2Q9H2M9 1393 aa14.93□□□□□ -0.02
SHPRH-201ENST00000275233 FRAT2O75474 233 aaPredicted RBP14.93□□□□□ -0.02
SHPRH-201ENST00000275233 TOMM22Q9NS69 142 aa14.92□□□□□ -0.02
SHPRH-201ENST00000275233 GTF2E1P29083 439 aaPredicted RBP14.92□□□□□ -0.02
SHPRH-201ENST00000275233 ANKRD30AQ9BXX3 1397 aa14.92□□□□□ -0.02
SHPRH-201ENST00000275233 TERF2IPQ9NYB0 399 aa14.91□□□□□ -0.02
SHPRH-201ENST00000275233 CCER2I3L3R5 266 aa14.91□□□□□ -0.02
SHPRH-201ENST00000275233 FOXD4L5Q5VV16 416 aaPredicted RBP14.91□□□□□ -0.02
SHPRH-201ENST00000275233 FOXD4L4Q8WXT5 416 aaPredicted RBP14.91□□□□□ -0.02
SHPRH-201ENST00000275233 GPATCH3Q96I76 525 aa14.91□□□□□ -0.02
SHPRH-201ENST00000275233 KIAA2012Q0VF49 1180 aa14.91□□□□□ -0.02
SHPRH-201ENST00000275233 PRM3Q9NNZ6 103 aa14.9□□□□□ -0.02
SHPRH-201ENST00000275233 EIF3AQ14152 1382 aaKnown RBP14.9□□□□□ -0.02
SHPRH-201ENST00000275233 RALBP1Q15311 655 aa14.89□□□□□ -0.03
SHPRH-201ENST00000275233 VPS53Q5VIR6 699 aa14.89□□□□□ -0.03
SHPRH-201ENST00000275233 CCDC88BA6NC98 1476 aa14.89□□□□□ -0.03
SHPRH-201ENST00000275233 CFAP44Q96MT7 982 aa14.89□□□□□ -0.03
SHPRH-201ENST00000275233 NGEFQ8N5V2 710 aa14.89□□□□□ -0.03
SHPRH-201ENST00000275233 RASSF8Q8NHQ8 419 aa14.89□□□□□ -0.03
SHPRH-201ENST00000275233 MSH5O43196 834 aa14.89□□□□□ -0.03
SHPRH-201ENST00000275233 DEKP35659 375 aaKnown RBP14.89□□□□□ -0.03
SHPRH-201ENST00000275233 RBM19Q9Y4C8 960 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms