RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 PREX2Q70Z35 1606 aa24.32■■□□□ 1.48
TPM1-201ENST00000267996 NAIPQ13075 1403 aa24.31■■□□□ 1.48
TPM1-201ENST00000267996 CLSPNQ9HAW4 1339 aa24.31■■□□□ 1.48
TPM1-201ENST00000267996 TTC37Q6PGP7 1564 aa24.31■■□□□ 1.48
TPM1-201ENST00000267996 CDC42BPBQ9Y5S2 1711 aa24.29■■□□□ 1.48
TPM1-201ENST00000267996 ROCK1Q13464 1354 aa24.28■■□□□ 1.48
TPM1-201ENST00000267996 WDR7Q9Y4E6 1490 aa24.27■■□□□ 1.48
TPM1-201ENST00000267996 GCC2Q8IWJ2 1684 aa24.25■■□□□ 1.47
TPM1-201ENST00000267996 ZNF777Q9ULD5 760 aaPredicted RBP24.24■■□□□ 1.47
TPM1-201ENST00000267996 MYO5CQ9NQX4 1742 aa24.24■■□□□ 1.47
TPM1-201ENST00000267996 KCNH8Q96L42 1107 aa24.24■■□□□ 1.47
TPM1-201ENST00000267996 CHIC2Q9UKJ5 165 aa24.23■■□□□ 1.47
TPM1-201ENST00000267996 CROCC2H7BZ55 1655 aa24.22■■□□□ 1.47
TPM1-201ENST00000267996 SAMD9LQ8IVG5 1584 aa24.21■■□□□ 1.47
TPM1-201ENST00000267996 PLCH2O75038 1416 aa24.21■■□□□ 1.47
TPM1-201ENST00000267996 ASXL2Q76L83 1435 aa24.21■■□□□ 1.47
TPM1-201ENST00000267996 ARHGEF5Q12774 1597 aa24.2■■□□□ 1.47
TPM1-201ENST00000267996 RRP7BPQ9NSQ0 103 aa24.19■■□□□ 1.46
TPM1-201ENST00000267996 ADGRL2O95490 1459 aa24.19■■□□□ 1.46
TPM1-201ENST00000267996 MBD5Q9P267 1494 aa24.19■■□□□ 1.46
TPM1-201ENST00000267996 ARHGAP5Q13017 1502 aa24.18■■□□□ 1.46
TPM1-201ENST00000267996 SHANK2Q9UPX8 1470 aa24.18■■□□□ 1.46
TPM1-201ENST00000267996 ARAP3Q8WWN8 1544 aa24.17■■□□□ 1.46
TPM1-201ENST00000267996 RIMBP3CA6NJZ7 1639 aa24.17■■□□□ 1.46
TPM1-201ENST00000267996 RIMBP3BA6NNM3 1639 aa24.17■■□□□ 1.46
TPM1-201ENST00000267996 RIMBP3Q9UFD9 1639 aa24.17■■□□□ 1.46
TPM1-201ENST00000267996 NPM1P06748 294 aaKnown RBP eCLIP24.17■■□□□ 1.46
TPM1-201ENST00000267996 ADGBQ8N7X0 1667 aa24.16■■□□□ 1.46
TPM1-201ENST00000267996 ABCA9Q8IUA7 1624 aa24.15■■□□□ 1.46
TPM1-201ENST00000267996 MAPKBP1O60336 1514 aa24.15■■□□□ 1.46
TPM1-201ENST00000267996 NCOA1Q15788 1441 aa24.14■■□□□ 1.46
TPM1-201ENST00000267996 KIAA1107Q9UPP5 1409 aa24.14■■□□□ 1.46
TPM1-201ENST00000267996 PLEKHH2Q8IVE3 1493 aa24.14■■□□□ 1.46
TPM1-201ENST00000267996 RSPH4AQ5TD94 716 aa24.13■■□□□ 1.45
TPM1-201ENST00000267996 KDM6BO15054 1643 aa24.11■■□□□ 1.45
TPM1-201ENST00000267996 CCDC141Q6ZP82 1450 aa24.11■■□□□ 1.45
TPM1-201ENST00000267996 HNRNPMP52272 730 aaKnown RBP eCLIP24.11■■□□□ 1.45
TPM1-201ENST00000267996 EFCAB2Q5VUJ9 269 aa24.1■■□□□ 1.45
TPM1-201ENST00000267996 ACIN1Q9UKV3 1341 aaKnown RBP24.1■■□□□ 1.45
TPM1-201ENST00000267996 C9orf84Q5VXU9 1444 aa24.1■■□□□ 1.45
TPM1-201ENST00000267996 ANKRD30AQ9BXX3 1397 aa24.08■■□□□ 1.45
TPM1-201ENST00000267996 SYCP2Q9BX26 1530 aa24.08■■□□□ 1.45
TPM1-201ENST00000267996 TSPY4P0CV99 314 aa24.05■■□□□ 1.44
TPM1-201ENST00000267996 TSPY10P0CW01 314 aa24.05■■□□□ 1.44
TPM1-201ENST00000267996 CYB5RLQ6IPT4 315 aa24.05■■□□□ 1.44
TPM1-201ENST00000267996 MAST1Q9Y2H9 1570 aa24.04■■□□□ 1.44
TPM1-201ENST00000267996 ABCC1P33527 1531 aa24.04■■□□□ 1.44
TPM1-201ENST00000267996 ARHGEF12Q9NZN5 1544 aa24.04■■□□□ 1.44
TPM1-201ENST00000267996 FANCAO15360 1455 aa23.98■■□□□ 1.43
TPM1-201ENST00000267996 ANKRD50Q9ULJ7 1429 aa23.96■■□□□ 1.43
TPM1-201ENST00000267996 DENND4BO75064 1496 aaPredicted RBP23.95■■□□□ 1.42
TPM1-201ENST00000267996 KIF15Q9NS87 1388 aa23.94■■□□□ 1.42
TPM1-201ENST00000267996 TRAPPC8Q9Y2L5 1435 aa23.93■■□□□ 1.42
TPM1-201ENST00000267996 TRIM52Q96A61 297 aa23.93■■□□□ 1.42
TPM1-201ENST00000267996 PLXNC1O60486 1568 aa23.93■■□□□ 1.42
TPM1-201ENST00000267996 CD109Q6YHK3 1445 aa23.92■■□□□ 1.42
TPM1-201ENST00000267996 MPHOSPH9Q99550 1183 aa23.9■■□□□ 1.42
TPM1-201ENST00000267996 GLI2P10070 1586 aa23.87■■□□□ 1.41
TPM1-201ENST00000267996 ADGRL1O94910 1474 aa23.87■■□□□ 1.41
TPM1-201ENST00000267996 RTEL1-TNFRSF6BF6WH68 1400 aa23.87■■□□□ 1.41
TPM1-201ENST00000267996 CFAP74Q9C0B2 1584 aa23.87■■□□□ 1.41
TPM1-201ENST00000267996 PZPP20742 1482 aa23.87■■□□□ 1.41
TPM1-201ENST00000267996 SIN3AQ96ST3 1273 aa23.86■■□□□ 1.41
TPM1-201ENST00000267996 TIMELESSQ9UNS1 1208 aa23.86■■□□□ 1.41
TPM1-201ENST00000267996 SCAPERQ9BY12 1400 aa23.84■■□□□ 1.41
TPM1-201ENST00000267996 KDM5DQ9BY66 1539 aa23.83■■□□□ 1.41
TPM1-201ENST00000267996 DUOX2Q9NRD8 1548 aa23.83■■□□□ 1.4
TPM1-201ENST00000267996 MAP3K4Q9Y6R4 1608 aa23.82■■□□□ 1.4
TPM1-201ENST00000267996 AFAP1Q8N556 730 aa23.82■■□□□ 1.4
TPM1-201ENST00000267996 ZFYVE16Q7Z3T8 1539 aa23.81■■□□□ 1.4
TPM1-201ENST00000267996 SPAG9O60271 1321 aaKnown RBP23.81■■□□□ 1.4
TPM1-201ENST00000267996 NEO1Q92859 1461 aa23.8■■□□□ 1.4
TPM1-201ENST00000267996 INO80Q9ULG1 1556 aaPredicted RBP23.79■■□□□ 1.4
TPM1-201ENST00000267996 NEUROD1Q13562 356 aa23.79■■□□□ 1.4
TPM1-201ENST00000267996 SLC4A1APQ9BWU0 796 aaKnown RBP23.79■■□□□ 1.4
TPM1-201ENST00000267996 ERBINQ96RT1 1412 aa23.78■■□□□ 1.4
TPM1-201ENST00000267996 DIP2BQ9P265 1576 aa23.77■■□□□ 1.4
TPM1-201ENST00000267996 ANKRD30BQ9BXX2 1392 aa23.77■■□□□ 1.39
TPM1-201ENST00000267996 NUP155O75694 1391 aa23.76■■□□□ 1.39
TPM1-201ENST00000267996 ATP7AQ04656 1500 aa23.76■■□□□ 1.39
TPM1-201ENST00000267996 UNC13BO14795 1591 aa23.75■■□□□ 1.39
TPM1-201ENST00000267996 ZNF518AQ6AHZ1 1483 aa23.75■■□□□ 1.39
TPM1-201ENST00000267996 POGZQ7Z3K3 1410 aa23.73■■□□□ 1.39
TPM1-201ENST00000267996 KDM5CP41229 1560 aa23.72■■□□□ 1.39
TPM1-201ENST00000267996 FOXD1Q16676 465 aa23.7■■□□□ 1.39
TPM1-201ENST00000267996 MAGI2Q86UL8 1455 aa23.7■■□□□ 1.38
TPM1-201ENST00000267996 FAM69CQ0P6D2 419 aa23.68■■□□□ 1.38
TPM1-201ENST00000267996 KIDINS220Q9ULH0 1771 aa23.68■■□□□ 1.38
TPM1-201ENST00000267996 MLH3Q9UHC1 1453 aa23.67■■□□□ 1.38
TPM1-201ENST00000267996 TONSLQ96HA7 1378 aa23.67■■□□□ 1.38
TPM1-201ENST00000267996 PKD2Q13563 968 aa23.67■■□□□ 1.38
TPM1-201ENST00000267996 FAM135AQ9P2D6 1515 aa23.67■■□□□ 1.38
TPM1-201ENST00000267996 PPP1R15AO75807 674 aaPredicted RBP23.66■■□□□ 1.38
TPM1-201ENST00000267996 RPRD2Q5VT52 1461 aaKnown RBP23.65■■□□□ 1.38
TPM1-201ENST00000267996 IQGAP3Q86VI3 1631 aa23.65■■□□□ 1.38
TPM1-201ENST00000267996 ZNF316A6NFI3 1004 aaPredicted RBP23.64■■□□□ 1.38
TPM1-201ENST00000267996 DHX29Q7Z478 1369 aaKnown RBP23.63■■□□□ 1.37
TPM1-201ENST00000267996 PPRC1Q5VV67 1664 aaKnown RBP23.61■■□□□ 1.37
TPM1-201ENST00000267996 EIF2AK4Q9P2K8 1649 aaKnown RBP23.61■■□□□ 1.37
TPM1-201ENST00000267996 HECW2Q9P2P5 1572 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms