RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 NISCHQ9Y2I1 1504 aa37.24■■■■□ 3.55
TPM1-201ENST00000267996 CCDC180Q9P1Z9 1646 aa32.47■■■□□ 2.79
TPM1-201ENST00000267996 ZCCHC6Q5VYS8 1495 aaKnown RBP31.29■■■□□ 2.6
TPM1-201ENST00000267996 DCAF1Q9Y4B6 1507 aa30.85■■■□□ 2.53
TPM1-201ENST00000267996 ABCC9O60706 1549 aa30.64■■■□□ 2.49
TPM1-201ENST00000267996 DCAF8L2P0C7V8 631 aa30.6■■■□□ 2.49
TPM1-201ENST00000267996 MYO15BQ96JP2 1530 aa30.49■■■□□ 2.47
TPM1-201ENST00000267996 NACADO15069 1562 aa30.26■■■□□ 2.43
TPM1-201ENST00000267996 SHROOM4Q9ULL8 1493 aa30.25■■■□□ 2.43
TPM1-201ENST00000267996 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
TPM1-201ENST00000267996 SCRIBQ14160 1630 aa29.79■■■□□ 2.36
TPM1-201ENST00000267996 UNC13AQ9UPW8 1703 aa29.35■■■□□ 2.29
TPM1-201ENST00000267996 SUPT5HO00267 1087 aaKnown RBP29.11■■■□□ 2.25
TPM1-201ENST00000267996 BICRAQ9NZM4 1560 aa29.09■■■□□ 2.25
TPM1-201ENST00000267996 CECR2Q9BXF3 1484 aa28.91■■■□□ 2.22
TPM1-201ENST00000267996 RSF1Q96T23 1441 aaPredicted RBP28.88■■■□□ 2.21
TPM1-201ENST00000267996 PABPN1Q86U42 306 aaKnown RBP eCLIP28.88■■■□□ 2.211e-13■■■□□ 18.2
TPM1-201ENST00000267996 MROH2BQ7Z745 1585 aa28.75■■■□□ 2.19
TPM1-201ENST00000267996 BAZ1AQ9NRL2 1556 aaPredicted RBP28.74■■■□□ 2.19
TPM1-201ENST00000267996 SMARCA4P51532 1647 aa28.6■■■□□ 2.17
TPM1-201ENST00000267996 WIZO95785 1651 aa28.49■■■□□ 2.15
TPM1-201ENST00000267996 PEG3Q9GZU2 1588 aa28.31■■■□□ 2.12
TPM1-201ENST00000267996 TOP2AP11388 1531 aaKnown RBP28.22■■■□□ 2.11
TPM1-201ENST00000267996 EIF4G1Q04637 1599 aaKnown RBP28.19■■■□□ 2.1
TPM1-201ENST00000267996 ATAD2BQ9ULI0 1458 aa28.16■■■□□ 2.1
TPM1-201ENST00000267996 SMARCA2P51531 1590 aa28.13■■■□□ 2.09
TPM1-201ENST00000267996 BAZ1BQ9UIG0 1483 aaKnown RBP27.96■■■□□ 2.07
TPM1-201ENST00000267996 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.07
TPM1-201ENST00000267996 CCDC88BA6NC98 1476 aa27.94■■■□□ 2.06
TPM1-201ENST00000267996 NCAPD3P42695 1498 aa27.94■■■□□ 2.06
TPM1-201ENST00000267996 HMGXB3Q12766 1538 aa27.88■■■□□ 2.05
TPM1-201ENST00000267996 CC2D2AQ9P2K1 1620 aa27.75■■■□□ 2.03
TPM1-201ENST00000267996 TRIM41Q8WV44 630 aa27.41■■□□□ 1.98
TPM1-201ENST00000267996 CFTRP13569 1480 aa27.31■■□□□ 1.96
TPM1-201ENST00000267996 ABCC8Q09428 1581 aa27.3■■□□□ 1.96
TPM1-201ENST00000267996 CADPSQ9ULU8 1353 aa27.2■■□□□ 1.94
TPM1-201ENST00000267996 WRNQ14191 1432 aaPredicted RBP eCLIP27.16■■□□□ 1.94
TPM1-201ENST00000267996 PRDM2Q13029 1718 aa27.14■■□□□ 1.93
TPM1-201ENST00000267996 DNAJC5BQ9UF47 199 aa27.05■■□□□ 1.92
TPM1-201ENST00000267996 SYNJ1O43426 1573 aa27.05■■□□□ 1.92
TPM1-201ENST00000267996 TOP2BQ02880 1626 aa26.96■■□□□ 1.91
TPM1-201ENST00000267996 LAMC3Q9Y6N6 1575 aa26.96■■□□□ 1.91
TPM1-201ENST00000267996 BIVM-ERCC5R4GMW8 1640 aa26.94■■□□□ 1.9
TPM1-201ENST00000267996 NESP48681 1621 aa26.91■■□□□ 1.9
TPM1-201ENST00000267996 CUX1P39880 1505 aa26.89■■□□□ 1.89
TPM1-201ENST00000267996 FANCD2Q9BXW9 1451 aa26.87■■□□□ 1.89
TPM1-201ENST00000267996 FAM9AQ8IZU1 332 aaPredicted RBP26.85■■□□□ 1.89
TPM1-201ENST00000267996 LOC105371045A0A1W2PR82 267 aa26.83■■□□□ 1.89
TPM1-201ENST00000267996 SOGA1O94964 1423 aa26.81■■□□□ 1.88
TPM1-201ENST00000267996 EEA1Q15075 1411 aa26.81■■□□□ 1.88
TPM1-201ENST00000267996 PDS5BQ9NTI5 1447 aa26.74■■□□□ 1.87
TPM1-201ENST00000267996 RUSC2Q8N2Y8 1516 aa26.72■■□□□ 1.87
TPM1-201ENST00000267996 CEP164Q9UPV0 1460 aa26.69■■□□□ 1.86
TPM1-201ENST00000267996 DNMBPQ6XZF7 1577 aa26.64■■□□□ 1.86
TPM1-201ENST00000267996 CSRNP3Q8WYN3 585 aa26.63■■□□□ 1.85
TPM1-201ENST00000267996 TOPBP1Q92547 1522 aa26.6■■□□□ 1.85
TPM1-201ENST00000267996 KIF21AQ7Z4S6 1674 aa26.58■■□□□ 1.85
TPM1-201ENST00000267996 FGD5Q6ZNL6 1462 aa26.58■■□□□ 1.84
TPM1-201ENST00000267996 URB2Q14146 1524 aaKnown RBP26.55■■□□□ 1.84
TPM1-201ENST00000267996 KIF27Q86VH2 1401 aa26.48■■□□□ 1.83
TPM1-201ENST00000267996 POLA1P09884 1462 aaPredicted RBP26.46■■□□□ 1.83
TPM1-201ENST00000267996 KIF21BO75037 1637 aa26.45■■□□□ 1.82
TPM1-201ENST00000267996 EHMT2Q96KQ7 1210 aa26.41■■□□□ 1.82
TPM1-201ENST00000267996 GOLGA3Q08378 1498 aa26.4■■□□□ 1.82
TPM1-201ENST00000267996 MRC2Q9UBG0 1479 aa26.4■■□□□ 1.82
TPM1-201ENST00000267996 CUX2O14529 1486 aa26.39■■□□□ 1.82
TPM1-201ENST00000267996 ABCA10Q8WWZ4 1543 aa26.38■■□□□ 1.81
TPM1-201ENST00000267996 RAD54L2Q9Y4B4 1467 aa26.35■■□□□ 1.81
TPM1-201ENST00000267996 TNIKQ9UKE5 1360 aa26.35■■□□□ 1.81
TPM1-201ENST00000267996 PRXQ9BXM0 1461 aa26.34■■□□□ 1.81
TPM1-201ENST00000267996 WDR97A6NE52 1622 aa26.28■■□□□ 1.8
TPM1-201ENST00000267996 IGF1RP08069 1367 aa26.28■■□□□ 1.8
TPM1-201ENST00000267996 ERICH3Q5RHP9 1530 aa26.28■■□□□ 1.8
TPM1-201ENST00000267996 RAPGEF2Q9Y4G8 1499 aa26.27■■□□□ 1.8
TPM1-201ENST00000267996 WDR62O43379 1518 aa26.27■■□□□ 1.8
TPM1-201ENST00000267996 ERCC6Q03468 1493 aa26.25■■□□□ 1.79
TPM1-201ENST00000267996 UBTFP17480 764 aaKnown RBP26.22■■□□□ 1.79
TPM1-201ENST00000267996 TARBP1Q13395 1621 aaKnown RBP26.21■■□□□ 1.79
TPM1-201ENST00000267996 THOC2Q8NI27 1593 aaKnown RBP26.18■■□□□ 1.78
TPM1-201ENST00000267996 CEP162Q5TB80 1403 aa26.17■■□□□ 1.78
TPM1-201ENST00000267996 ABCA5Q8WWZ7 1642 aa26.15■■□□□ 1.78
TPM1-201ENST00000267996 CARMIL1Q5VZK9 1371 aa26.12■■□□□ 1.77
TPM1-201ENST00000267996 TDRD9Q8NDG6 1382 aaKnown RBP26.09■■□□□ 1.77
TPM1-201ENST00000267996 IFT140Q96RY7 1462 aa26.08■■□□□ 1.77
TPM1-201ENST00000267996 GAPVD1Q14C86 1478 aa26.08■■□□□ 1.76
TPM1-201ENST00000267996 CUL7Q14999 1698 aa26.04■■□□□ 1.76
TPM1-201ENST00000267996 CLIP1P30622 1438 aa25.97■■□□□ 1.75
TPM1-201ENST00000267996 AQRO60306 1485 aaKnown RBP eCLIP25.92■■□□□ 1.742e-12■■■■□ 23
TPM1-201ENST00000267996 ZNF608Q9ULD9 1512 aaPredicted RBP25.92■■□□□ 1.74
TPM1-201ENST00000267996 PBRM1Q86U86 1689 aa25.91■■□□□ 1.74
TPM1-201ENST00000267996 GRIN2BQ13224 1484 aa25.89■■□□□ 1.73
TPM1-201ENST00000267996 EIF4G3O43432 1585 aaKnown RBP25.82■■□□□ 1.72
TPM1-201ENST00000267996 FHAD1B1AJZ9 1412 aa25.81■■□□□ 1.72
TPM1-201ENST00000267996 ADAMTS12P58397 1594 aa25.8■■□□□ 1.72
TPM1-201ENST00000267996 VPS8Q8N3P4 1428 aa25.76■■□□□ 1.71
TPM1-201ENST00000267996 ARAP1Q96P48 1450 aa25.74■■□□□ 1.71
TPM1-201ENST00000267996 ARHGAP35Q9NRY4 1499 aa25.73■■□□□ 1.71
TPM1-201ENST00000267996 CTTNBP2Q8WZ74 1663 aa25.73■■□□□ 1.71
TPM1-201ENST00000267996 RANGAP1P46060 587 aaPredicted RBP25.72■■□□□ 1.71
TPM1-201ENST00000267996 SNAPC4Q5SXM2 1469 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms