RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 MYO5CQ9NQX4 1742 aa34.27■■■■□ 3.08
SMARCB1-201ENST00000263121 NPM1P06748 294 aaKnown RBP eCLIP34.27■■■■□ 3.08
SMARCB1-201ENST00000263121 SETD5Q9C0A6 1442 aa34.25■■■■□ 3.07
SMARCB1-201ENST00000263121 DAPK1P53355 1430 aa34.24■■■■□ 3.07
SMARCB1-201ENST00000263121 ABCC5O15440 1437 aa34.22■■■■□ 3.07
SMARCB1-201ENST00000263121 CYB5RLQ6IPT4 315 aa34.21■■■■□ 3.07
SMARCB1-201ENST00000263121 CCER1Q8TC90 406 aaPredicted RBP34.21■■■■□ 3.07
SMARCB1-201ENST00000263121 RAB3GAP2Q9H2M9 1393 aa34.2■■■■□ 3.07
SMARCB1-201ENST00000263121 ZNF777Q9ULD5 760 aaPredicted RBP34.19■■■■□ 3.06
SMARCB1-201ENST00000263121 HFM1A2PYH4 1435 aa34.19■■■■□ 3.06
SMARCB1-201ENST00000263121 SAMD9LQ8IVG5 1584 aa34.19■■■■□ 3.06
SMARCB1-201ENST00000263121 ABCA9Q8IUA7 1624 aa34.18■■■■□ 3.06
SMARCB1-201ENST00000263121 PLCH2O75038 1416 aa34.18■■■■□ 3.06
SMARCB1-201ENST00000263121 ARHGAP5Q13017 1502 aa34.18■■■■□ 3.06
SMARCB1-201ENST00000263121 AKNAQ7Z591 1439 aa34.17■■■■□ 3.06
SMARCB1-201ENST00000263121 CROCC2H7BZ55 1655 aa34.15■■■■□ 3.06
SMARCB1-201ENST00000263121 ARAP3Q8WWN8 1544 aa34.14■■■■□ 3.06
SMARCB1-201ENST00000263121 NAIPQ13075 1403 aa34.12■■■■□ 3.05
SMARCB1-201ENST00000263121 ARHGEF5Q12774 1597 aa34.11■■■■□ 3.05
SMARCB1-201ENST00000263121 MAPKBP1O60336 1514 aa34.11■■■■□ 3.05
SMARCB1-201ENST00000263121 GCC2Q8IWJ2 1684 aa34.1■■■■□ 3.05
SMARCB1-201ENST00000263121 ROCK1Q13464 1354 aa34.09■■■■□ 3.05
SMARCB1-201ENST00000263121 ZEB1P37275 1124 aaPredicted RBP34.09■■■■□ 3.05
SMARCB1-201ENST00000263121 MBD5Q9P267 1494 aa34.08■■■■□ 3.05
SMARCB1-201ENST00000263121 CHIC2Q9UKJ5 165 aa34.07■■■■□ 3.04
SMARCB1-201ENST00000263121 PLEKHH2Q8IVE3 1493 aa34.05■■■■□ 3.04
SMARCB1-201ENST00000263121 SHANK2Q9UPX8 1470 aa34.05■■■■□ 3.04
SMARCB1-201ENST00000263121 DHX57Q6P158 1386 aaKnown RBP34.05■■■■□ 3.04
SMARCB1-201ENST00000263121 ADGBQ8N7X0 1667 aa34.04■■■■□ 3.04
SMARCB1-201ENST00000263121 KIAA1107Q9UPP5 1409 aa34.03■■■■□ 3.04
SMARCB1-201ENST00000263121 ADGRL2O95490 1459 aa34.02■■■■□ 3.04
SMARCB1-201ENST00000263121 SYCP2Q9BX26 1530 aa34.02■■■■□ 3.04
SMARCB1-201ENST00000263121 EFCAB2Q5VUJ9 269 aa34.01■■■■□ 3.04
SMARCB1-201ENST00000263121 RRP7BPQ9NSQ0 103 aa33.99■■■■□ 3.03
SMARCB1-201ENST00000263121 CCDC141Q6ZP82 1450 aa33.99■■■■□ 3.03
SMARCB1-201ENST00000263121 HNRNPMP52272 730 aaKnown RBP eCLIP33.98■■■■□ 3.03
SMARCB1-201ENST00000263121 ABCC1P33527 1531 aa33.97■■■■□ 3.03
SMARCB1-201ENST00000263121 RSPH4AQ5TD94 716 aa33.96■■■■□ 3.03
SMARCB1-201ENST00000263121 NCOA1Q15788 1441 aa33.94■■■■□ 3.02
SMARCB1-201ENST00000263121 C9orf84Q5VXU9 1444 aa33.94■■■■□ 3.02
SMARCB1-201ENST00000263121 ARHGEF12Q9NZN5 1544 aa33.93■■■■□ 3.02
SMARCB1-201ENST00000263121 FANCAO15360 1455 aa33.92■■■■□ 3.02
SMARCB1-201ENST00000263121 KDM6BO15054 1643 aa33.9■■■■□ 3.02
SMARCB1-201ENST00000263121 MAST1Q9Y2H9 1570 aa33.9■■■■□ 3.02
SMARCB1-201ENST00000263121 CLSPNQ9HAW4 1339 aa33.89■■■■□ 3.02
SMARCB1-201ENST00000263121 ANKRD30AQ9BXX3 1397 aa33.89■■■■□ 3.02
SMARCB1-201ENST00000263121 TSPY4P0CV99 314 aa33.87■■■■□ 3.01
SMARCB1-201ENST00000263121 TSPY10P0CW01 314 aa33.87■■■■□ 3.01
SMARCB1-201ENST00000263121 CD109Q6YHK3 1445 aa33.87■■■■□ 3.01
SMARCB1-201ENST00000263121 GLI2P10070 1586 aa33.86■■■■□ 3.01
SMARCB1-201ENST00000263121 CFAP74Q9C0B2 1584 aa33.81■■■■□ 3
SMARCB1-201ENST00000263121 MAP3K4Q9Y6R4 1608 aa33.8■■■■□ 3
SMARCB1-201ENST00000263121 TRAPPC8Q9Y2L5 1435 aa33.79■■■■□ 3
SMARCB1-201ENST00000263121 DIP2BQ9P265 1576 aa33.78■■■■□ 3
SMARCB1-201ENST00000263121 ADGRL1O94910 1474 aa33.77■■■■□ 3
SMARCB1-201ENST00000263121 ACIN1Q9UKV3 1341 aaKnown RBP33.75■■■□□ 2.99
SMARCB1-201ENST00000263121 PLXNC1O60486 1568 aa33.75■■■□□ 2.99
SMARCB1-201ENST00000263121 KIF15Q9NS87 1388 aa33.72■■■□□ 2.99
SMARCB1-201ENST00000263121 ANKRD50Q9ULJ7 1429 aa33.71■■■□□ 2.99
SMARCB1-201ENST00000263121 SCAPERQ9BY12 1400 aa33.71■■■□□ 2.99
SMARCB1-201ENST00000263121 NEO1Q92859 1461 aa33.69■■■□□ 2.98
SMARCB1-201ENST00000263121 RTEL1-TNFRSF6BF6WH68 1400 aa33.67■■■□□ 2.98
SMARCB1-201ENST00000263121 ZFYVE16Q7Z3T8 1539 aa33.65■■■□□ 2.98
SMARCB1-201ENST00000263121 AFAP1Q8N556 730 aa33.63■■■□□ 2.97
SMARCB1-201ENST00000263121 INO80Q9ULG1 1556 aaPredicted RBP33.63■■■□□ 2.97
SMARCB1-201ENST00000263121 FAM69CQ0P6D2 419 aa33.62■■■□□ 2.97
SMARCB1-201ENST00000263121 TRIM52Q96A61 297 aa33.61■■■□□ 2.97
SMARCB1-201ENST00000263121 SPAG9O60271 1321 aaKnown RBP33.61■■■□□ 2.97
SMARCB1-201ENST00000263121 DENND4BO75064 1496 aaPredicted RBP33.59■■■□□ 2.97
SMARCB1-201ENST00000263121 ZNF518AQ6AHZ1 1483 aa33.59■■■□□ 2.97
SMARCB1-201ENST00000263121 DUOX2Q9NRD8 1548 aa33.59■■■□□ 2.97
SMARCB1-201ENST00000263121 ATP7AQ04656 1500 aa33.57■■■□□ 2.96
SMARCB1-201ENST00000263121 POGZQ7Z3K3 1410 aa33.56■■■□□ 2.96
SMARCB1-201ENST00000263121 KIF13AQ9H1H9 1805 aa33.55■■■□□ 2.96
SMARCB1-201ENST00000263121 KDM5CP41229 1560 aa33.55■■■□□ 2.96
SMARCB1-201ENST00000263121 PPRC1Q5VV67 1664 aaKnown RBP33.54■■■□□ 2.96
SMARCB1-201ENST00000263121 PZPP20742 1482 aa33.52■■■□□ 2.96
SMARCB1-201ENST00000263121 MPHOSPH9Q99550 1183 aa33.52■■■□□ 2.96
SMARCB1-201ENST00000263121 ERBINQ96RT1 1412 aa33.52■■■□□ 2.96
SMARCB1-201ENST00000263121 KDM5DQ9BY66 1539 aa33.51■■■□□ 2.96
SMARCB1-201ENST00000263121 KIDINS220Q9ULH0 1771 aa33.48■■■□□ 2.95
SMARCB1-201ENST00000263121 UNC13BO14795 1591 aa33.47■■■□□ 2.95
SMARCB1-201ENST00000263121 TEX14Q8IWB6 1497 aa33.45■■■□□ 2.95
SMARCB1-201ENST00000263121 TSPOAP1O95153 1857 aa33.45■■■□□ 2.95
SMARCB1-201ENST00000263121 MLH3Q9UHC1 1453 aa33.45■■■□□ 2.94
SMARCB1-201ENST00000263121 RICTORQ6R327 1708 aa33.43■■■□□ 2.94
SMARCB1-201ENST00000263121 HECW2Q9P2P5 1572 aa33.43■■■□□ 2.94
SMARCB1-201ENST00000263121 SLC4A1APQ9BWU0 796 aaKnown RBP33.41■■■□□ 2.94
SMARCB1-201ENST00000263121 NUP155O75694 1391 aa33.41■■■□□ 2.94
SMARCB1-201ENST00000263121 SIN3AQ96ST3 1273 aa33.4■■■□□ 2.94
SMARCB1-201ENST00000263121 DNAJC5Q9H3Z4 198 aa33.4■■■□□ 2.94
SMARCB1-201ENST00000263121 MAGI2Q86UL8 1455 aa33.39■■■□□ 2.94
SMARCB1-201ENST00000263121 FRMPD1Q5SYB0 1578 aa33.36■■■□□ 2.93
SMARCB1-201ENST00000263121 EIF2AK4Q9P2K8 1649 aaKnown RBP33.34■■■□□ 2.93
SMARCB1-201ENST00000263121 RAPGEF3O95398 923 aa33.33■■■□□ 2.93
SMARCB1-201ENST00000263121 DHX29Q7Z478 1369 aaKnown RBP33.33■■■□□ 2.93
SMARCB1-201ENST00000263121 FAM135AQ9P2D6 1515 aa33.33■■■□□ 2.93
SMARCB1-201ENST00000263121 MYT1LQ9UL68 1186 aa33.33■■■□□ 2.93
SMARCB1-201ENST00000263121 IQGAP3Q86VI3 1631 aa33.32■■■□□ 2.92
SMARCB1-201ENST00000263121 ANKRD30BQ9BXX2 1392 aa33.31■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms