RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Ccnb3Q810T2 1396 aa23.18■■□□□ 1.3
Ctcf-201ENSMUST00000005841 BC005561E9Q5E2 1589 aa23.14■■□□□ 1.3
Ctcf-201ENSMUST00000005841 Map3k4O08648 1597 aa23.14■■□□□ 1.29
Ctcf-201ENSMUST00000005841 NexmifQ5DTT1 1515 aa23.14■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Ccdc27Q3V036 639 aa23.13■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Plekhg5Q66T02 1073 aa23.13■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Ipo9Q91YE6 1041 aa23.11■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Mphosph9A6H5Y1 991 aa23.11■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Ercc6F8VPZ5 1481 aa23.1■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Naip6Q9JIB6 1403 aa23.1■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Lmod2Q3UHZ5 550 aa23.1■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Kdm6bQ5NCY0 1641 aa23.09■■□□□ 1.29
Ctcf-201ENSMUST00000005841 L3mbtl2P59178 703 aa23.08■■□□□ 1.29
Ctcf-201ENSMUST00000005841 Exoc6Q8R313 802 aa23.08■■□□□ 1.29
Ctcf-201ENSMUST00000005841 LrpprcQ6PB66 1392 aaKnown RBP23.08■■□□□ 1.28
Ctcf-201ENSMUST00000005841 AlkP97793 1621 aa23.06■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Usp47Q8BY87 1376 aa23.06■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Supt6hQ62383 1726 aaKnown RBP23.06■■□□□ 1.28
Ctcf-201ENSMUST00000005841 TnikP83510 1323 aa23.05■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Ift140E9PY46 1464 aa23.05■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Mrs2Q5NCE8 434 aa23.05■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Arhgef40Q3UPH7 1517 aa23.04■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Il27Q8K3I6 234 aa23.04■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Pla2r1Q62028 1487 aa23.04■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Kank1E9Q238 1360 aa23.03■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Wwc2Q6NXJ0 1187 aa23.03■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Erbb3Q61526 1339 aa23.03■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Adamts12Q811B3 1600 aa23.02■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Cdc42bpaQ3UU96 1719 aa23.02■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Kdm3bQ6ZPY7 1562 aa23.02■■□□□ 1.28
Ctcf-201ENSMUST00000005841 Arhgap27A2AB59 869 aa23.01■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Cux2P70298 1426 aa23■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Abcc5Q9R1X5 1436 aa23■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Mug2P28666 1451 aa23■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Trpm2Q91YD4 1506 aa23■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Iqgap1Q9JKF1 1657 aaKnown RBP22.99■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Gapvd1Q6PAR5 1458 aa22.98■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Tcerg1Q8CGF7 1100 aaKnown RBP22.96■■□□□ 1.27
Ctcf-201ENSMUST00000005841 Setd1aE9PYH6 1716 aa22.95■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Ccdc9Q8VC31 543 aaKnown RBP22.95■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Kcnh8P59111 1102 aa22.95■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Magi3Q9EQJ9 1476 aa22.94■■□□□ 1.26
Ctcf-201ENSMUST00000005841 P3h3Q8CG70 732 aa22.94■■□□□ 1.26
Ctcf-201ENSMUST00000005841 CadpsQ80TJ1 1355 aa22.93■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Setd1bQ8CFT2 1985 aa22.93■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Iqcf3Q9D498 203 aa22.91■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Rad54l2Q99NG0 1466 aa22.9■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Ak9G3UYQ4 1894 aa22.89■■□□□ 1.26
Ctcf-201ENSMUST00000005841 Plb1Q3TTY0 1478 aa22.88■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Eif5bQ05D44 1216 aaKnown RBP22.87■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Gtf3c3Q3TMP1 882 aa22.87■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Slc24a1Q91WD8 1130 aa22.87■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Dhx57Q6P5D3 1388 aaKnown RBP22.87■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Zmym4A2A791 1549 aaKnown RBP22.86■■□□□ 1.25
Ctcf-201ENSMUST00000005841 WizO88286 1684 aaKnown RBP22.86■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Phldb1Q6PDH0 1371 aaKnown RBP22.86■■□□□ 1.25
Ctcf-201ENSMUST00000005841 DroshaQ5HZJ0 1373 aaKnown RBP22.86■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Adcy10Q8C0T9 1614 aa22.86■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Adgrb2Q8CGM1 1561 aa22.86■■□□□ 1.25
Ctcf-201ENSMUST00000005841 RalgapbQ8BQZ4 1484 aa22.85■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Zfp644E9QA22 1323 aa22.85■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Kiaa1551Q5DTW7 1521 aa22.85■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Fam135aQ6NS59 1506 aa22.85■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Pkd2O35245 966 aa22.84■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Fgd1P52734 960 aa22.84■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Slc4a3P16283 1227 aa22.83■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Chic2Q9D9G3 165 aa22.83■■□□□ 1.25
Ctcf-201ENSMUST00000005841 Rock2P70336 1388 aa22.83■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Cdk13Q69ZA1 1511 aaKnown RBP22.82■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Arhgef11Q68FM7 1552 aa22.82■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Soga1E1U8D0 1418 aa22.82■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Tarbp1E9Q368 1579 aa22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Il16O54824 1322 aa22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Abca16E9PWJ7 1678 aa22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Cpsf1Q9EPU4 1441 aaKnown RBP22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Clasp1Q80TV8 1535 aaKnown RBP22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Dapk1Q80YE7 1442 aa22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Ncoa3O09000 1398 aa22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Ttc41Q692V3 1318 aa22.8■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Kdm5cP41230 1554 aa22.79■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Rapgef6Q5NCJ1 1609 aa22.78■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Wdr7Q920I9 1489 aa22.78■■□□□ 1.24
Ctcf-201ENSMUST00000005841 Ofd1Q80Z25 1017 aa22.76■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Nkx1-2P42580 305 aa22.76■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Cwc22Q8C5N3 908 aaKnown RBP22.75■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Plekhh2Q8C115 1491 aa22.75■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Pdlim2Q8R1G6 349 aa22.75■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Gm14025A2AP89 1413 aa22.74■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Dot1lQ6XZL8 1540 aa22.74■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Kif27Q7M6Z4 1394 aa22.73■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Prkrip1Q9CWV6 186 aaKnown RBP22.73■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Cabp1Q9JLK7 227 aa22.72■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Hsp90aa1P07901 733 aaKnown RBP22.71■■□□□ 1.23
Ctcf-201ENSMUST00000005841 Plch2A2AP18 1501 aa22.71■■□□□ 1.23
Ctcf-201ENSMUST00000005841 NrdcQ8BHG1 1161 aa22.7■■□□□ 1.22
Ctcf-201ENSMUST00000005841 Irx3P81067 507 aa22.69■■□□□ 1.22
Ctcf-201ENSMUST00000005841 Dhx9O70133 1380 aaKnown RBP22.68■■□□□ 1.22
Ctcf-201ENSMUST00000005841 Zmym3Q9JLM4 1370 aa22.68■■□□□ 1.22
Ctcf-201ENSMUST00000005841 Grin2aP35436 1464 aa22.68■■□□□ 1.22
Ctcf-201ENSMUST00000005841 Mtus2Q3UHD3 1353 aa22.67■■□□□ 1.22
Retrieved 100 of 22,080 RNA–protein pairs in 15.1 ms