RNA–Protein interactions for RNA: YLR086W

SMC4, Transcript of Subunit of the condensin complex, yeast

Gene SMC4, Length 4,257 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC4	YLR086W	BUG1	Q12191	341 aa		1.48	□□□□□ -2.17
SMC4	YLR086W	RLM1	Q12224	676 aa		1.48	□□□□□ -2.17
SMC4	YLR086W	VMR1	P38735	1592 aa		1.48	□□□□□ -2.17
SMC4	YLR086W	BNR1	P40450	1375 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	MET17	P06106	444 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	SPS4	P09937	338 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	SGV1	P23293	657 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	MNN2	P38069	597 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	DBP8	P38719	431 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	BUR6	P40096	142 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YFR020W	P43600	232 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	TPO3	Q06451	622 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	TY1B-NL2	Q99337	1749 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	YRF1-4	O13559	1382 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YML133C	Q03099	1374 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YLL067C	Q07888	1374 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YLL066C	Q99208	1374 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	RPL31B	P0C2H9	113 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	SEC63	P14906	663 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	NUP1	P20676	1076 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	POL4	P25615	582 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	KRE2	P27809	442 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	RAD14	P28519	371 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	RPL32	P38061	130 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	APE4	P38821	490 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YJL043W	P47053	257 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YNL181W	P53878	407 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	HEF3	P53978	1044 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	RPL15B	P54780	204 aa	Predicted RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	RPT6	Q01939	405 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	YMR206W	Q03695	313 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	RBS1	Q05672	457 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	THI20	Q08224	551 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YLR049C	Q12110	428 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	RRG1	Q12167	365 aa	Predicted RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	SNU66	Q12420	587 aa	Predicted RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	RRD2	Q12461	358 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YOL159C-A	Q3E769	90 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	RPP0	P05317	312 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	YFL068W	P0CX99	160 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YLL066W-A	P0CY00	160 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YLL067W-A	P0CY01	160 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	REC107	P21651	314 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	UTR4	P32626	227 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	HCS1	P34243	683 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	BLI1	P35727	113 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	CUE2	P36075	443 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	JEM1	P40358	645 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	TFG2	P41896	400 aa	Predicted RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	IRC8	P47046	822 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	AIM22	P47051	409 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	IMD4	P50094	524 aa	Known RBP	1.47	□□□□□ -2.17
SMC4	YLR086W	HOT1	Q03213	719 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	RMT2	Q03305	412 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	YMR155W	Q03795	547 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	ORM2	Q06144	216 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	GRC3	Q07845	632 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	TEN1	Q07921	160 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	FRE3	Q08905	711 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	MHP1	P43638	1398 aa		1.47	□□□□□ -2.17
SMC4	YLR086W	MRP13	P12686	339 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	HOM2	P13663	365 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	YCP4	P25349	247 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	ECM32	P32644	1121 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	SRO77	P38163	1010 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	SRP72	P38688	640 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	TAX4	P47030	604 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	ECM27	P47144	725 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	SOL4	P53315	255 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	YTP1	P53584	459 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	ERG13	P54839	491 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	TAF12	Q03761	539 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	EMI2	Q04409	500 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	MGR3	Q04472	501 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	MRPL1	Q04599	285 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	DPB4	Q04603	196 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	UAF30	Q08747	228 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	CRC1	Q12289	327 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	FRE7	Q12333	620 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	PDR15	Q04182	1529 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	APE1	P14904	514 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	1.46	□□□□□ -2.18	not detected
SMC4	YLR086W	SIN4	P32259	974 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	HXT3	P32466	567 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	YME2	P32843	850 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	PMT1	P33775	817 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	KTR3	P38130	404 aa	Predicted RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	ICS2	P38284	255 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	EFM2	P38347	419 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	PSA1	P41940	361 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	NET1	P47035	1189 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	TCB2	P48231	1178 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	NUP100	Q02629	959 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	RPC11	Q04307	110 aa	Predicted RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	YOL159C	Q08300	171 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	RRI1	Q12468	440 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	RPA190	P10964	1664 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	GAL80	P04387	435 aa		1.46	□□□□□ -2.18
SMC4	YLR086W	AMD1	P15274	810 aa	Known RBP	1.46	□□□□□ -2.18
SMC4	YLR086W	CDC23	P16522	626 aa		1.46	□□□□□ -2.18

Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms