RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC40	YPR110C	PRP2	P20095	876 aa	Predicted RBP	3.15	□□□□□ -1.91
RPC40	YPR110C	GPI10	P30777	616 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	SNC1	P31109	117 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	MGM1	P32266	881 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	ASK1	P35734	292 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	YPK3	P38070	525 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	LAG1	P38703	411 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	DOT5	P40553	215 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	MDV1	P47025	714 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	PKP2	P53170	491 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	YNL181W	P53878	407 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	TOF2	Q02208	771 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	YDL218W	Q07629	317 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	YOR365C	Q08844	703 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	RRG1	Q12167	365 aa	Predicted RBP	3.15	□□□□□ -1.91
RPC40	YPR110C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
RPC40	YPR110C	UBX3	Q12229	455 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	HER1	Q12276	1246 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	SSN2	P38931	1420 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	KOG1	P38873	1557 aa		3.15	□□□□□ -1.91
RPC40	YPR110C	DNA2	P38859	1522 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	EDE1	P34216	1381 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	CBP1	P07252	654 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	PEP4	P07267	405 aa	Known RBP	3.14	□□□□□ -1.91
RPC40	YPR110C	SUI2	P20459	304 aa	Known RBP	3.14	□□□□□ -1.91
RPC40	YPR110C	GID7	P25569	745 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	PMT1	P33775	817 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	STV1	P37296	890 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	SCO2	P38072	301 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	YHR210C	P38893	341 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	VRG4	P40107	337 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	IAH1	P41734	238 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	ALK1	P43633	760 aa	Known RBP	3.14	□□□□□ -1.91
RPC40	YPR110C	STB2	P46679	850 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	YGR126W	P53274	230 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	YVH1	Q02256	364 aa	Known RBP	3.14	□□□□□ -1.91
RPC40	YPR110C	NUP100	Q02629	959 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	EKI1	Q03764	534 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	TAP42	Q04372	366 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	COQ9	Q05779	260 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	YDL007C-A	Q2V2Q0	85 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	YOL159C-A	Q3E769	90 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	HIR3	P47171	1648 aa		3.14	□□□□□ -1.91
RPC40	YPR110C	YFL068W	P0CX99	160 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	YLL066W-A	P0CY00	160 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	YLL067W-A	P0CY01	160 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	PEP5	P12868	1029 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	PDX1	P16451	410 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	PAP1	P29468	568 aa	Known RBP	3.13	□□□□□ -1.91
RPC40	YPR110C	SHP1	P34223	423 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	YKL023W	P36103	277 aa	Known RBP	3.13	□□□□□ -1.91
RPC40	YPR110C	BYE1	P36106	594 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	SPC34	P36131	295 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	ROT2	P38138	954 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	GND1	P38720	489 aa	Known RBP	3.13	□□□□□ -1.91
RPC40	YPR110C	OTU2	P38747	307 aa	Known RBP	3.13	□□□□□ -1.91
RPC40	YPR110C	AXL1	P40851	1208 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	RTS2	P40962	232 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	HXT14	P42833	540 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	GAT1	P43574	510 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	SNG1	P46950	547 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	AIM22	P47051	409 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	DRN1	P53255	507 aa	Known RBP	3.13	□□□□□ -1.91
RPC40	YPR110C	IZH1	Q03419	316 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	YMR155W	Q03795	547 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	YMR160W	Q03823	816 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	YDR131C	Q03899	556 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	RSF1	Q05043	376 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	ERP4	Q12450	207 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	ARP6	Q12509	438 aa		3.13	□□□□□ -1.91
RPC40	YPR110C	CLC1	P17891	233 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	RPC53	P25441	422 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	YME1	P32795	747 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	YIL152W	P40455	235 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	FET5	P43561	622 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	ATG27	P46989	271 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	SMM1	P53720	384 aa	Known RBP	3.12	□□□□□ -1.91
RPC40	YPR110C	YNL234W	P53857	426 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	ESBP6	P53918	673 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	SLG1	P54867	378 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	RHO4	Q00246	291 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	YMR254C	Q04838	102 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	VTA1	Q06263	330 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	RDR1	Q08904	546 aa		3.12	□□□□□ -1.91
RPC40	YPR110C	SUC2	P00724	532 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	RPL31B	P0C2H9	113 aa	Known RBP	3.11	□□□□□ -1.91
RPC40	YPR110C	RPL42A	P0CX27	106 aa	Known RBP	3.11	□□□□□ -1.91
RPC40	YPR110C	RPL42B	P0CX28	106 aa	Known RBP	3.11	□□□□□ -1.91
RPC40	YPR110C	CLB3	P24870	427 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	SNT1	P25357	1226 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	RPS2	P25443	254 aa	Known RBP	3.11	□□□□□ -1.91
RPC40	YPR110C	BUD14	P27637	709 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	PDR3	P33200	976 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	PHD1	P36093	366 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	DUG2	P38149	878 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	VMA13	P41807	478 aa	Known RBP	3.11	□□□□□ -1.91
RPC40	YPR110C	GPD2	P41911	440 aa	Known RBP	3.11	□□□□□ -1.91
RPC40	YPR110C	YJR154W	P47181	346 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	ALT2	P52892	507 aa		3.11	□□□□□ -1.91
RPC40	YPR110C	SCW4	P53334	386 aa	Known RBP	3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 37.3 ms