RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C UBA4P38820 440 aa2.3□□□□□ -2.04
UBP11YKR098C HXT9P40885 567 aa2.3□□□□□ -2.04
UBP11YKR098C AIM22P47051 409 aa2.3□□□□□ -2.04
UBP11YKR098C TOF2Q02208 771 aa2.3□□□□□ -2.04
UBP11YKR098C KAP120Q02932 1032 aa2.3□□□□□ -2.04
UBP11YKR098C YMR160WQ03823 816 aa2.3□□□□□ -2.04
UBP11YKR098C SWF1Q04629 336 aa2.3□□□□□ -2.04
UBP11YKR098C FMP45Q07651 309 aa2.3□□□□□ -2.04
UBP11YKR098C CDC45Q08032 650 aa2.3□□□□□ -2.04
UBP11YKR098C FRE7Q12333 620 aa2.3□□□□□ -2.04
UBP11YKR098C PDH1Q12428 516 aaKnown RBP2.3□□□□□ -2.04
UBP11YKR098C BNR1P40450 1375 aa2.3□□□□□ -2.04
UBP11YKR098C GAL4P04386 881 aa2.3□□□□□ -2.04
UBP11YKR098C CBP1P07252 654 aa2.3□□□□□ -2.04
UBP11YKR098C MDH1P17505 334 aaKnown RBP RIP-Chip data2.3□□□□□ -2.04not detected
UBP11YKR098C ILV6P25605 309 aaKnown RBP2.3□□□□□ -2.04
UBP11YKR098C VPH1P32563 840 aaKnown RBP2.3□□□□□ -2.04
UBP11YKR098C HCS1P34243 683 aa2.3□□□□□ -2.04
UBP11YKR098C THI2P38141 450 aa2.3□□□□□ -2.04
UBP11YKR098C RIX1P38883 763 aaPredicted RBP2.3□□□□□ -2.04
UBP11YKR098C YIL060WP40519 144 aa2.3□□□□□ -2.04
UBP11YKR098C ULP2P40537 1034 aaPredicted RBP2.3□□□□□ -2.04
UBP11YKR098C BUD27P43573 796 aaKnown RBP RIP-Chip data2.3□□□□□ -2.04not detected
UBP11YKR098C UBP8P50102 471 aa2.3□□□□□ -2.04
UBP11YKR098C MNP1P53163 194 aaPredicted RBP2.3□□□□□ -2.04
UBP11YKR098C OAZ1Q02803 292 aa2.3□□□□□ -2.04
UBP11YKR098C YDL057WQ07379 328 aa2.3□□□□□ -2.04
UBP11YKR098C PAR32Q12515 295 aaKnown RBP2.3□□□□□ -2.04
UBP11YKR098C PRP2P20095 876 aaPredicted RBP2.29□□□□□ -2.04
UBP11YKR098C CNA1P23287 553 aa2.29□□□□□ -2.04
UBP11YKR098C MBR1P23493 339 aa2.29□□□□□ -2.04
UBP11YKR098C PPH22P23595 377 aa2.29□□□□□ -2.04
UBP11YKR098C COQ3P27680 312 aa2.29□□□□□ -2.04
UBP11YKR098C IDH2P28241 369 aaKnown RBP2.29□□□□□ -2.04
UBP11YKR098C YME2P32843 850 aa2.29□□□□□ -2.04
UBP11YKR098C MDL1P33310 695 aa2.29□□□□□ -2.04
UBP11YKR098C TUL1P36096 758 aa2.29□□□□□ -2.04
UBP11YKR098C RXT2P38255 430 aa2.29□□□□□ -2.04
UBP11YKR098C MBB1P39534 108 aa2.29□□□□□ -2.04
UBP11YKR098C LCB2P40970 561 aa2.29□□□□□ -2.04
UBP11YKR098C CAK1P43568 368 aaPredicted RBP2.29□□□□□ -2.04
UBP11YKR098C NMD5P46970 1048 aa2.29□□□□□ -2.04
UBP11YKR098C NET1P47035 1189 aa2.29□□□□□ -2.04
UBP11YKR098C PKP2P53170 491 aa2.29□□□□□ -2.04
UBP11YKR098C YGR126WP53274 230 aa2.29□□□□□ -2.04
UBP11YKR098C SLG1P54867 378 aa2.29□□□□□ -2.04
UBP11YKR098C COR1P07256 457 aa2.29□□□□□ -2.04
UBP11YKR098C PEP4P07267 405 aaKnown RBP2.29□□□□□ -2.04
UBP11YKR098C TUB1P09733 447 aaKnown RBP2.29□□□□□ -2.04
UBP11YKR098C YMR085WP0CF18 432 aa2.29□□□□□ -2.04
UBP11YKR098C SNF3P10870 884 aa2.29□□□□□ -2.04
UBP11YKR098C URE2P23202 354 aaKnown RBP2.29□□□□□ -2.04
UBP11YKR098C SPB1P25582 841 aaPredicted RBP2.29□□□□□ -2.04
UBP11YKR098C DPH2P32461 534 aa2.29□□□□□ -2.04
UBP11YKR098C TFB1P32776 642 aa2.29□□□□□ -2.04
UBP11YKR098C LEU5P38702 357 aa2.29□□□□□ -2.04
UBP11YKR098C ATG27P46989 271 aa2.29□□□□□ -2.04
UBP11YKR098C DRN1P53255 507 aaKnown RBP2.29□□□□□ -2.04
UBP11YKR098C CAC2Q04199 468 aa2.29□□□□□ -2.04
UBP11YKR098C GYL1Q04322 720 aa2.29□□□□□ -2.04
UBP11YKR098C DON1Q05610 365 aa2.29□□□□□ -2.04
UBP11YKR098C IRC3Q06683 689 aa2.29□□□□□ -2.04
UBP11YKR098C GPM3Q12326 303 aa2.29□□□□□ -2.04
UBP11YKR098C RRI1Q12468 440 aa2.29□□□□□ -2.04
UBP11YKR098C SUI2P20459 304 aaKnown RBP2.28□□□□□ -2.04
UBP11YKR098C RRP7P25368 297 aaPredicted RBP2.28□□□□□ -2.04
UBP11YKR098C YIM1P28625 365 aa2.28□□□□□ -2.04
UBP11YKR098C RRT2P38332 387 aa2.28□□□□□ -2.04
UBP11YKR098C YHR210CP38893 341 aa2.28□□□□□ -2.04
UBP11YKR098C GDI1P39958 451 aaKnown RBP2.28□□□□□ -2.04
UBP11YKR098C ALK1P43633 760 aaKnown RBP2.28□□□□□ -2.04
UBP11YKR098C SNG1P46950 547 aa2.28□□□□□ -2.04
UBP11YKR098C YGR016WP53209 190 aa2.28□□□□□ -2.04
UBP11YKR098C HEF3P53978 1044 aaKnown RBP2.28□□□□□ -2.04
UBP11YKR098C ARP10Q04549 284 aa2.28□□□□□ -2.04
UBP11YKR098C YOR365CQ08844 703 aa2.28□□□□□ -2.04
UBP11YKR098C SPE3Q12074 293 aaKnown RBP2.28□□□□□ -2.04
UBP11YKR098C ERG11P10614 530 aa2.27□□□□□ -2.05
UBP11YKR098C SGV1P23293 657 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C SHP1P34223 423 aa2.27□□□□□ -2.05
UBP11YKR098C PIM1P36775 1133 aa2.27□□□□□ -2.05
UBP11YKR098C ROT2P38138 954 aa2.27□□□□□ -2.05
UBP11YKR098C TCM62P38228 572 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C KEL1P38853 1164 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C YMR147WP40218 223 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C SEC28P40509 296 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C YGR149WP48236 432 aa2.27□□□□□ -2.05
UBP11YKR098C YGL108CP53139 140 aa2.27□□□□□ -2.05
UBP11YKR098C DUG3P53871 357 aa2.27□□□□□ -2.05
UBP11YKR098C IDP3P53982 420 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C RSC9Q03124 581 aa2.27□□□□□ -2.05
UBP11YKR098C SIL1Q08199 421 aa2.27□□□□□ -2.05
UBP11YKR098C THP1Q08231 455 aa2.27□□□□□ -2.05
UBP11YKR098C PUF2Q12221 1075 aaKnown RBP RIP-Chip data2.27□□□□□ -2.05not detected
UBP11YKR098C CTF3Q12748 733 aa2.27□□□□□ -2.05
UBP11YKR098C RAD52P06778 471 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C HOM2P13663 365 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C TPM1P17536 199 aaKnown RBP2.27□□□□□ -2.05
UBP11YKR098C RPB8P20436 146 aa2.27□□□□□ -2.05
UBP11YKR098C RAD14P28519 371 aa2.27□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 75.2 ms