RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 RESP18Q5W5W9 173 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 SMCR8Q8TEV9 937 aaPredicted RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 DRC1Q96MC2 740 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 ANO3Q9BYT9 981 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 MAN1B1Q9UKM7 699 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 CACNA1FO60840 1977 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 MEIS1O00470 390 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 FOXN1O15353 648 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 IL1R1P14778 569 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 EVX2Q03828 476 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 GPS2Q13227 327 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 WRNIP1Q96S55 665 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 COL14A1Q05707 1796 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 GCNT3O95395 438 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 PLCG1P19174 1290 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 ADKP55263 362 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SPP2Q13103 211 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SLC51AQ86UW1 340 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 MICALL2Q8IY33 904 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 ANKRD35Q8N283 1001 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 TMEM39BQ9GZU3 492 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 MRPL44Q9H9J2 332 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SH3GLB2Q9NR46 395 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 POTEMA6NI47 508 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 U2AF2P26368 475 aaKnown RBP eCLIP10.37□□□□□ -0.757e-8■■■■□ 22.5
TMEM39A-201ENST00000319172 NOP2P46087 812 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SUPT20HL1Q3ZLR7 823 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 GRIPAP1Q4V328 841 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 USP49Q70CQ1 688 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 MIER3Q7Z3K6 550 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 NLRX1Q86UT6 975 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 NEK11Q8NG66 645 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SLC16A10Q8TF71 515 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 GSDMAQ96QA5 445 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 AGXT2Q9BYV1 514 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 ZNF70Q9UC06 446 aaPredicted RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 B4DLN1 442 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 HARSP12081 509 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 RCSD1Q6JBY9 416 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SAMD7Q7Z3H4 446 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SLFN12Q8IYM2 578 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 TRIML1Q8N9V2 468 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 PAGE5Q96GU1 130 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 CCDC42Q96M95 316 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 GTPBP4Q9BZE4 634 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 RNF181Q9P0P0 153 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 CNOT7Q9UIV1 285 aaKnown RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 V9GYY5 206 aaPredicted RBP10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 SLIT2O94813 1529 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 KCPQ6ZWJ8 1503 aa10.37□□□□□ -0.75
TMEM39A-201ENST00000319172 hCG_1984214I3L0E3 225 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 LAD1O00515 517 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 CETN3O15182 167 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 CCDC175P0C221 793 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 ATP1A3P13637 1013 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 CYLC1P35663 651 aaPredicted RBP10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 SSR1P43307 286 aaKnown RBP10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 MORC3Q14149 939 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 MCM6Q14566 821 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 SEC23AQ15436 765 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 LRCH2Q5VUJ6 765 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 ZNF713Q8N859 430 aaPredicted RBP10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 DCAF4Q8WV16 495 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 LARP4BQ92615 738 aaKnown RBP10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 TAF4BQ92750 862 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 ZHX2Q9Y6X8 837 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 PARP4Q9UKK3 1724 aaKnown RBP10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 PDHBP11177 359 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 KRT9P35527 623 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 ZNF543Q08ER8 600 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 LRRC41Q15345 812 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 POTEAQ6S8J7 498 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 RASGRP2Q7LDG7 609 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 NCAPG2Q86XI2 1143 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 CNGA4Q8IV77 575 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 VTI1AQ96AJ9 217 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 PHF20Q9BVI0 1012 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 NBPF3Q9H094 633 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 CNTNAP5Q8WYK1 1306 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 AK9Q5TCS8 1911 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 TDP2O95551 362 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 NDUFB10O96000 172 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 RPL13P26373 211 aaKnown RBP10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 SYT10Q6XYQ8 523 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 RDH13Q8NBN7 331 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 KDM3AQ9Y4C1 1321 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 ABCC6O95255 1503 aa10.36□□□□□ -0.75
TMEM39A-201ENST00000319172 EIF2AK2P19525 551 aaKnown RBP10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 PPP1R2P41236 205 aa10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 RAPGEF1Q13905 1077 aa10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 MCF2L2Q86YR7 1114 aa10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 FAM212AQ96EL1 285 aa10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 RNF216Q9NWF9 866 aaPredicted RBP10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 SERPINA10Q9UK55 444 aa10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 GUCA1BQ9UMX6 200 aa10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 FAM208AQ9UK61 1670 aaKnown RBP10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 GOLGA6L9A6NEM1 432 aa10.35□□□□□ -0.75
TMEM39A-201ENST00000319172 KCNJ18B7U540 433 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 328.6 ms