RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C SEC62P21825 274 aa2.39□□□□□ -2.03
RTR1YER139C MRC1P25588 1096 aa2.39□□□□□ -2.03
RTR1YER139C ECM15P35195 104 aa2.39□□□□□ -2.03
RTR1YER139C VAM6Q07468 1049 aa2.39□□□□□ -2.03
RTR1YER139C YNK1P36010 153 aaKnown RBP2.38□□□□□ -2.03
RTR1YER139C FSH1P38777 243 aaKnown RBP2.38□□□□□ -2.03
RTR1YER139C CTF18P49956 741 aa2.38□□□□□ -2.03
RTR1YER139C WSC2P53832 503 aa2.38□□□□□ -2.03
RTR1YER139C YLR152CP54072 576 aa2.38□□□□□ -2.03
RTR1YER139C CSR1Q06705 408 aaKnown RBP2.38□□□□□ -2.03
RTR1YER139C THI20Q08224 551 aa2.38□□□□□ -2.03
RTR1YER139C YOL057WQ08225 711 aa2.38□□□□□ -2.03
RTR1YER139C YOR387CQ08910 206 aa2.38□□□□□ -2.03
RTR1YER139C RRP6Q12149 733 aaKnown RBP2.38□□□□□ -2.03
RTR1YER139C YER078W-AQ3E7A2 54 aa2.38□□□□□ -2.03
RTR1YER139C SPO16P17122 198 aa2.37□□□□□ -2.03
RTR1YER139C YIM1P28625 365 aa2.37□□□□□ -2.03
RTR1YER139C VPS17P32913 551 aa2.37□□□□□ -2.03
RTR1YER139C ESL2P36168 1195 aa2.37□□□□□ -2.03
RTR1YER139C SIM1P40472 476 aa2.37□□□□□ -2.03
RTR1YER139C BTN2P53286 410 aa2.37□□□□□ -2.03
RTR1YER139C SAM50P53969 484 aa2.37□□□□□ -2.03
RTR1YER139C HNT3Q08702 217 aa2.37□□□□□ -2.03
RTR1YER139C RRP12Q12754 1228 aaKnown RBP2.37□□□□□ -2.03
RTR1YER139C ISY1P21374 235 aaPredicted RBP2.36□□□□□ -2.03
RTR1YER139C RER1P25560 188 aa2.36□□□□□ -2.03
RTR1YER139C CMK1P27466 446 aaKnown RBP2.36□□□□□ -2.03
RTR1YER139C NAM9P27929 486 aa2.36□□□□□ -2.03
RTR1YER139C SAC6P32599 642 aaKnown RBP2.36□□□□□ -2.03
RTR1YER139C YME1P32795 747 aa2.36□□□□□ -2.03
RTR1YER139C TUL1P36096 758 aa2.36□□□□□ -2.03
RTR1YER139C APM3P38153 483 aa2.36□□□□□ -2.03
RTR1YER139C MOT3P54785 490 aaKnown RBP2.36□□□□□ -2.03
RTR1YER139C DIC1Q06143 298 aa2.36□□□□□ -2.03
RTR1YER139C YOL114CQ12322 202 aa2.36□□□□□ -2.03
RTR1YER139C UBA4P38820 440 aa2.35□□□□□ -2.03
RTR1YER139C MSO1P53604 210 aaKnown RBP2.35□□□□□ -2.03
RTR1YER139C CPR6P53691 371 aaKnown RBP2.35□□□□□ -2.03
RTR1YER139C DOS2P54858 310 aa2.35□□□□□ -2.03
RTR1YER139C SSK1Q07084 712 aa2.35□□□□□ -2.03
RTR1YER139C ATP2P00830 511 aaKnown RBP2.34□□□□□ -2.03
RTR1YER139C MIS1P09440 975 aaKnown RBP2.34□□□□□ -2.03
RTR1YER139C SNF3P10870 884 aa2.34□□□□□ -2.03
RTR1YER139C SPT15P13393 240 aaKnown RBP2.34□□□□□ -2.03
RTR1YER139C PGS1P25578 521 aa2.34□□□□□ -2.03
RTR1YER139C SNC1P31109 117 aa2.34□□□□□ -2.03
RTR1YER139C DEG1P31115 442 aaKnown RBP2.34□□□□□ -2.03
RTR1YER139C PMU1P36069 295 aa2.34□□□□□ -2.03
RTR1YER139C VPS52P39904 641 aa2.34□□□□□ -2.03
RTR1YER139C YBR138CP38277 524 aa2.33□□□□□ -2.04
RTR1YER139C NPR2P39923 615 aa2.33□□□□□ -2.04
RTR1YER139C PKP1P40530 394 aa2.33□□□□□ -2.04
RTR1YER139C TEP1P53916 434 aa2.33□□□□□ -2.04
RTR1YER139C ATG9Q12142 997 aa2.33□□□□□ -2.04
RTR1YER139C ATR1P13090 542 aa2.32□□□□□ -2.04
RTR1YER139C YCR022CP25620 114 aa2.32□□□□□ -2.04
RTR1YER139C FUN19P28003 413 aaPredicted RBP2.32□□□□□ -2.04
RTR1YER139C SWD3P38123 315 aa2.32□□□□□ -2.04
RTR1YER139C YGR210CP42942 411 aa2.32□□□□□ -2.04
RTR1YER139C IST1P53843 298 aaPredicted RBP2.32□□□□□ -2.04
RTR1YER139C ENT4Q07872 247 aa2.32□□□□□ -2.04
RTR1YER139C PIF1P07271 859 aa2.31□□□□□ -2.04
RTR1YER139C LCB1P25045 558 aaKnown RBP2.31□□□□□ -2.04
RTR1YER139C SRB5P32585 307 aa2.31□□□□□ -2.04
RTR1YER139C NUP120P35729 1037 aa2.31□□□□□ -2.04
RTR1YER139C TRS130Q03660 1102 aa2.31□□□□□ -2.04
RTR1YER139C HRT3Q12347 344 aa2.31□□□□□ -2.04
RTR1YER139C HXK2P04807 486 aaKnown RBP2.3□□□□□ -2.04
RTR1YER139C GRX4P32642 244 aa2.3□□□□□ -2.04
RTR1YER139C NDT80P38830 627 aa2.3□□□□□ -2.04
RTR1YER139C ANS1P38832 159 aa2.3□□□□□ -2.04
RTR1YER139C SPC72P39723 622 aa2.3□□□□□ -2.04
RTR1YER139C RNY1Q02933 434 aaKnown RBP2.3□□□□□ -2.04
RTR1YER139C RRG7Q08774 242 aaPredicted RBP2.3□□□□□ -2.04
RTR1YER139C TMS1Q12116 473 aa2.3□□□□□ -2.04
RTR1YER139C CCH1P50077 2039 aa2.3□□□□□ -2.04
RTR1YER139C CLN3P13365 580 aa2.29□□□□□ -2.04
RTR1YER139C YBL059WP34224 193 aa2.29□□□□□ -2.04
RTR1YER139C SMC3P47037 1230 aa2.29□□□□□ -2.04
RTR1YER139C STR3P53101 465 aaKnown RBP2.29□□□□□ -2.04
RTR1YER139C YVH1Q02256 364 aaKnown RBP2.29□□□□□ -2.04
RTR1YER139C RLI1Q03195 608 aaKnown RBP2.29□□□□□ -2.04
RTR1YER139C BRE1Q07457 700 aaKnown RBP2.29□□□□□ -2.04
RTR1YER139C APL4Q12028 832 aa2.29□□□□□ -2.04
RTR1YER139C CAR1P00812 333 aaKnown RBP2.28□□□□□ -2.04
RTR1YER139C RNA14P25298 677 aaKnown RBP2.28□□□□□ -2.04
RTR1YER139C PUT3P25502 979 aaPredicted RBP2.28□□□□□ -2.04
RTR1YER139C PAD1P33751 242 aaKnown RBP RIP-Chip data2.28□□□□□ -2.04not detected
RTR1YER139C TFC3P34111 1160 aa2.28□□□□□ -2.04
RTR1YER139C PAF1P38351 445 aa2.28□□□□□ -2.04
RTR1YER139C ASE1P50275 885 aa2.28□□□□□ -2.04
RTR1YER139C YPL014WQ02606 381 aa2.28□□□□□ -2.04
RTR1YER139C RBD2Q12270 262 aa2.28□□□□□ -2.04
RTR1YER139C ERV2Q12284 196 aa2.28□□□□□ -2.04
RTR1YER139C AMD1P15274 810 aaKnown RBP2.27□□□□□ -2.05
RTR1YER139C CBF2P32504 956 aa2.27□□□□□ -2.05
RTR1YER139C ROT2P38138 954 aa2.27□□□□□ -2.05
RTR1YER139C LAG1P38703 411 aa2.27□□□□□ -2.05
RTR1YER139C CSM2P40465 213 aa2.27□□□□□ -2.05
RTR1YER139C DPB11P47027 764 aaPredicted RBP2.27□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 109.6 ms