RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	ARP1	P38696	384 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	DBP8	P38719	431 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	EFM1	P38732	585 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	MEP1	P40260	492 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	DAN4	P47179	1161 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	TDA7	P53882	636 aa	Predicted RBP	13.95	□□□□□ -0.18
DEP1	YAL013W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	13.95	□□□□□ -0.18	RIP-Chip
DEP1	YAL013W	OSH6	Q02201	448 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	TAF12	Q03761	539 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	TRM12	Q04235	462 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	GLO2	Q05584	274 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	SMF3	Q12078	473 aa	Predicted RBP	13.95	□□□□□ -0.18
DEP1	YAL013W	YOR012W	Q12351	137 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	RPS9A	O13516	197 aa	Known RBP	13.94	□□□□□ -0.18
DEP1	YAL013W	NMT1	P14743	455 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	PUP3	P25451	205 aa	Known RBP	13.94	□□□□□ -0.18
DEP1	YAL013W	RAD14	P28519	371 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	PRP18	P33411	251 aa	Predicted RBP	13.94	□□□□□ -0.18
DEP1	YAL013W	TIP20	P33891	701 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	HSE1	P38753	452 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	IRR1	P40541	1150 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	USE1	P53146	245 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	IBD2	P53892	351 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	GTT2	Q12390	233 aa		13.94	□□□□□ -0.18
DEP1	YAL013W	RRP36	Q12481	300 aa	Predicted RBP	13.94	□□□□□ -0.18
DEP1	YAL013W	CAR1	P00812	333 aa	Known RBP	13.93	□□□□□ -0.18
DEP1	YAL013W	SFP1	P32432	683 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	EAP1	P36041	632 aa	Known RBP	13.93	□□□□□ -0.18
DEP1	YAL013W	RIM11	P38615	370 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	PCL5	P38794	229 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	SHU2	P38957	223 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	SER33	P40510	469 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	LSB3	P43603	459 aa	Known RBP	13.93	□□□□□ -0.18
DEP1	YAL013W	TIS11	P47977	285 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	MTO1	P53070	669 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	NNF2	P53253	936 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	YDL121C	Q07541	149 aa		13.93	□□□□□ -0.18
DEP1	YAL013W	PHO5	P00635	467 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	VAN1	P23642	535 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	SPR1	P32603	445 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	FRT2	P39734	528 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	COG7	P53195	279 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	SWC4	P53201	476 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	GTB1	Q04924	702 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	VTA1	Q06263	330 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	VAM6	Q07468	1049 aa		13.92	□□□□□ -0.18
DEP1	YAL013W	AHA1	Q12449	350 aa	Known RBP	13.92	□□□□□ -0.18
DEP1	YAL013W	ART10	P18634	518 aa	Known RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	PRP6	P19735	899 aa	Predicted RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	NUP120	P35729	1037 aa		13.91	□□□□□ -0.18
DEP1	YAL013W	VMA13	P41807	478 aa	Known RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	EFM5	P53200	248 aa	Known RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	SHY1	P53266	389 aa		13.91	□□□□□ -0.18
DEP1	YAL013W	CUS2	P53830	285 aa	Predicted RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	YNL035C	P53962	389 aa	Known RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	LGE1	Q02796	332 aa	Known RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	YML131W	Q03102	365 aa		13.91	□□□□□ -0.18
DEP1	YAL013W	SSL1	Q04673	461 aa	Predicted RBP	13.91	□□□□□ -0.18
DEP1	YAL013W	EPT1	P22140	391 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	PHO84	P25297	587 aa	Known RBP	13.9	□□□□□ -0.18
DEP1	YAL013W	YKR023W	P36119	530 aa	Known RBP	13.9	□□□□□ -0.18
DEP1	YAL013W	IML3	P38265	245 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	YHR020W	P38708	688 aa	Known RBP	13.9	□□□□□ -0.18
DEP1	YAL013W	ARN1	P38731	627 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	YJR154W	P47181	346 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	NUP84	P52891	726 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	MIG2	P53035	382 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	GTR2	P53290	341 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	NOP19	P53317	196 aa	Predicted RBP	13.9	□□□□□ -0.18
DEP1	YAL013W	YNR061C	P53747	219 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	RPC11	Q04307	110 aa	Predicted RBP	13.9	□□□□□ -0.18
DEP1	YAL013W	FAR10	Q06001	478 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	GPB1	Q08886	897 aa		13.9	□□□□□ -0.18
DEP1	YAL013W	SPT3	P06844	337 aa		13.89	□□□□□ -0.19
DEP1	YAL013W	GFD2	P25370	566 aa	Known RBP	13.89	□□□□□ -0.19
DEP1	YAL013W	RFA2	P26754	273 aa	Known RBP	13.89	□□□□□ -0.19
DEP1	YAL013W	CUE2	P36075	443 aa	Known RBP	13.89	□□□□□ -0.19
DEP1	YAL013W	NMA2	P53204	395 aa		13.89	□□□□□ -0.19
DEP1	YAL013W	CCE1	Q03702	353 aa		13.89	□□□□□ -0.19
DEP1	YAL013W	RIF2	Q06208	395 aa		13.89	□□□□□ -0.19
DEP1	YAL013W	YPR084W	Q06821	456 aa		13.89	□□□□□ -0.19
DEP1	YAL013W	ESA1	Q08649	445 aa		13.89	□□□□□ -0.19
DEP1	YAL013W	ATG34	Q12292	412 aa		13.89	□□□□□ -0.19
DEP1	YAL013W	FZO1	P38297	855 aa		13.88	□□□□□ -0.19
DEP1	YAL013W	YHL008C	P38750	627 aa		13.88	□□□□□ -0.19
DEP1	YAL013W	SSN3	P39073	555 aa		13.88	□□□□□ -0.19
DEP1	YAL013W	YNL010W	P53981	241 aa	Known RBP	13.88	□□□□□ -0.19
DEP1	YAL013W	JIP5	Q06214	492 aa	Predicted RBP	13.88	□□□□□ -0.19
DEP1	YAL013W	YEH2	Q07950	538 aa		13.88	□□□□□ -0.19
DEP1	YAL013W	DIA2	Q08496	732 aa	Predicted RBP	13.88	□□□□□ -0.19
DEP1	YAL013W	SNX3	Q08826	162 aa	Known RBP	13.88	□□□□□ -0.19
DEP1	YAL013W	CET1	O13297	549 aa	Predicted RBP	13.87	□□□□□ -0.19
DEP1	YAL013W	SEM1	O94742	89 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	YAR066W	P0CX18	203 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	YHR214W	P0CX19	203 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	FUS1	P11710	512 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	DBR1	P24309	405 aa	Known RBP	13.87	□□□□□ -0.19
DEP1	YAL013W	RPS1A	P33442	255 aa	Known RBP	13.87	□□□□□ -0.19
DEP1	YAL013W	PTH2	P34222	208 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	YPT52	P36018	234 aa	Known RBP	13.87	□□□□□ -0.19

Retrieved 100 of 5,963 RNA–protein pairs in 55.8 ms