RNA–Protein interactions for RNA: YKL039W

PTM1, Transcript of Protein of unknown function, yeast

Gene PTM1, Length 1,572 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTM1	YKL039W	TY2A-DR3	Q99303	438 aa		4.68	□□□□□ -1.66
PTM1	YKL039W	KRE5	P22023	1365 aa		4.68	□□□□□ -1.66
PTM1	YKL039W	TPK1	P06244	397 aa		4.67	□□□□□ -1.66
PTM1	YKL039W	AIM17	P23180	465 aa	Known RBP	4.67	□□□□□ -1.66
PTM1	YKL039W	VPS24	P36095	224 aa	Known RBP	4.67	□□□□□ -1.66
PTM1	YKL039W	ASG1	P40467	964 aa		4.67	□□□□□ -1.66
PTM1	YKL039W	SMK1	P41808	388 aa		4.67	□□□□□ -1.66
PTM1	YKL039W	YPL068C	Q02749	293 aa		4.67	□□□□□ -1.66
PTM1	YKL039W	ATG16	Q03818	150 aa		4.67	□□□□□ -1.66
PTM1	YKL039W	SWA2	Q06677	668 aa		4.67	□□□□□ -1.66
PTM1	YKL039W	EDE1	P34216	1381 aa		4.67	□□□□□ -1.66
PTM1	YKL039W	NUP192	P47054	1683 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	GPA1	P08539	472 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	SUI3	P09064	285 aa	Known RBP	4.66	□□□□□ -1.66
PTM1	YKL039W	XRS2	P33301	854 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	VPS41	P38959	992 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	BNA1	P47096	177 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	ASE1	P50275	885 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	PSP1	P50896	841 aa	Known RBP	4.66	□□□□□ -1.66
PTM1	YKL039W	PIG1	Q06216	648 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	IMH1	Q06704	911 aa	Known RBP	4.66	□□□□□ -1.66
PTM1	YKL039W	MCH4	Q08268	501 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	ENT1	Q12518	454 aa		4.66	□□□□□ -1.66
PTM1	YKL039W	SRP54	P20424	541 aa	Known RBP	4.65	□□□□□ -1.66
PTM1	YKL039W	MRS6	P32864	603 aa	Known RBP	4.65	□□□□□ -1.66
PTM1	YKL039W	ADE17	P38009	592 aa	Known RBP	4.65	□□□□□ -1.66
PTM1	YKL039W	RTS3	P53289	263 aa		4.65	□□□□□ -1.66
PTM1	YKL039W	DCP2	P53550	970 aa	Known RBP	4.65	□□□□□ -1.66
PTM1	YKL039W	GTR1	Q00582	310 aa		4.65	□□□□□ -1.66
PTM1	YKL039W	TMA16	Q08687	178 aa		4.65	□□□□□ -1.66
PTM1	YKL039W	RRP5	Q05022	1729 aa	Known RBP	4.65	□□□□□ -1.67
PTM1	YKL039W	PWP2	P25635	923 aa	Known RBP	4.65	□□□□□ -1.67
PTM1	YKL039W	RAD16	P31244	790 aa		4.65	□□□□□ -1.67
PTM1	YKL039W	UBP13	P38187	747 aa		4.65	□□□□□ -1.67
PTM1	YKL039W	FUI1	P38196	639 aa		4.65	□□□□□ -1.67
PTM1	YKL039W	MRPL1	Q04599	285 aa		4.65	□□□□□ -1.67
PTM1	YKL039W	YER145C-A	A0A023PYF4	145 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	MRP2	P10663	115 aa	Predicted RBP	4.64	□□□□□ -1.67
PTM1	YKL039W	MGM1	P32266	881 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	PSY4	P38193	441 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	YPT11	P48559	417 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	YNL144C	P53907	740 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	ECM22	Q05958	814 aa	Predicted RBP	4.64	□□□□□ -1.67
PTM1	YKL039W	YLR455W	Q06188	304 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	CRN1	Q06440	651 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	PSR2	Q07949	397 aa		4.64	□□□□□ -1.67
PTM1	YKL039W	NTR2	P36118	322 aa	Predicted RBP	4.63	□□□□□ -1.67
PTM1	YKL039W	PXL1	P36166	706 aa		4.63	□□□□□ -1.67
PTM1	YKL039W	GND1	P38720	489 aa	Known RBP	4.63	□□□□□ -1.67
PTM1	YKL039W	SWP82	P43554	623 aa		4.63	□□□□□ -1.67
PTM1	YKL039W	IRC8	P47046	822 aa		4.63	□□□□□ -1.67
PTM1	YKL039W	YGL036W	P53185	909 aa	Predicted RBP	4.63	□□□□□ -1.67
PTM1	YKL039W	VMS1	Q04311	632 aa	Known RBP	4.63	□□□□□ -1.67
PTM1	YKL039W	ATX2	Q12067	313 aa		4.63	□□□□□ -1.67
PTM1	YKL039W	YCR006C	P25350	157 aa		4.62	□□□□□ -1.67
PTM1	YKL039W	SRB5	P32585	307 aa		4.62	□□□□□ -1.67
PTM1	YKL039W	LYS20	P48570	428 aa	Known RBP	4.62	□□□□□ -1.67
PTM1	YKL039W	VID22	Q05934	901 aa		4.62	□□□□□ -1.67
PTM1	YKL039W	VCX1	Q99385	411 aa		4.62	□□□□□ -1.67
PTM1	YKL039W	SSM4	P40318	1319 aa		4.62	□□□□□ -1.67
PTM1	YKL039W	SNF1	P06782	633 aa	Known RBP	4.61	□□□□□ -1.67
PTM1	YKL039W	TEF4	P36008	412 aa	Known RBP	4.61	□□□□□ -1.67
PTM1	YKL039W	AAP1	P37898	856 aa	Known RBP	4.61	□□□□□ -1.67
PTM1	YKL039W	SCO2	P38072	301 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	IST3	P40565	148 aa	Predicted RBP	4.61	□□□□□ -1.67
PTM1	YKL039W	MDV1	P47025	714 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	YNR061C	P53747	219 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	REG1	Q00816	1014 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	CAC2	Q04199	468 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	FRE3	Q08905	711 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	TRM8	Q12009	286 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	CHO1	P08456	276 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	PET111	P08468	800 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	PSD1	P39006	500 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	YIR016W	P40572	265 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	UBP8	P50102	471 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	YGR021W	P53212	290 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	SWF1	Q04629	336 aa		4.61	□□□□□ -1.67
PTM1	YKL039W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
PTM1	YKL039W	STE50	P25344	346 aa		4.6	□□□□□ -1.67
PTM1	YKL039W	ATO2	P32907	282 aa		4.6	□□□□□ -1.67
PTM1	YKL039W	TFC3	P34111	1160 aa		4.6	□□□□□ -1.67
PTM1	YKL039W	LHS1	P36016	881 aa		4.6	□□□□□ -1.67
PTM1	YKL039W	YLR049C	Q12110	428 aa		4.6	□□□□□ -1.67
PTM1	YKL039W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.6	□□□□□ -1.67
PTM1	YKL039W	GUK1	P15454	187 aa	Known RBP	4.59	□□□□□ -1.67
PTM1	YKL039W	ERG8	P24521	451 aa		4.59	□□□□□ -1.67
PTM1	YKL039W	SEC31	P38968	1273 aa	Known RBP	4.59	□□□□□ -1.67
PTM1	YKL039W	UME6	P39001	836 aa		4.59	□□□□□ -1.67
PTM1	YKL039W	ECM10	P39987	644 aa		4.59	□□□□□ -1.67
PTM1	YKL039W	MRX1	P40050	688 aa		4.59	□□□□□ -1.67
PTM1	YKL039W	PFK26	P40433	827 aa	Known RBP	4.59	□□□□□ -1.67
PTM1	YKL039W	YIL152W	P40455	235 aa		4.59	□□□□□ -1.67
PTM1	YKL039W	PSK2	Q08217	1101 aa		4.59	□□□□□ -1.67
PTM1	YKL039W	ERG27	Q12452	347 aa	Known RBP	4.59	□□□□□ -1.67
PTM1	YKL039W	SOF1	P33750	489 aa	Known RBP	4.58	□□□□□ -1.68
PTM1	YKL039W	RPN11	P43588	306 aa	Known RBP	4.58	□□□□□ -1.68
PTM1	YKL039W	CTK2	P46962	323 aa		4.58	□□□□□ -1.68
PTM1	YKL039W	VPS4	P52917	437 aa		4.58	□□□□□ -1.68
PTM1	YKL039W	ASI1	P54074	624 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 25.6 ms