RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	RTN2	Q12443	393 aa		2.6	□□□□□ -1.99
HRD3	YLR207W	SIR4	P11978	1358 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	TY1B-A	O13527	1196 aa	Known RBP	2.59	□□□□□ -1.99
HRD3	YLR207W	PRP4	P20053	465 aa	Known RBP	2.59	□□□□□ -1.99
HRD3	YLR207W	ARP2	P32381	391 aa	Known RBP	2.59	□□□□□ -1.99
HRD3	YLR207W	CTF13	P35203	478 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	TIF4631	P39935	952 aa	Known RBP	2.59	□□□□□ -1.99
HRD3	YLR207W	DJP1	P40564	432 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	IST3	P40565	148 aa	Predicted RBP	2.59	□□□□□ -1.99
HRD3	YLR207W	YIR042C	P40586	236 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	SKP2	P42843	763 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	YJL055W	P47044	245 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	AMA1	P50082	593 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	CSI1	Q04368	295 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	YLR224W	Q05947	369 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	CDC45	Q08032	650 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	YDL177C	Q12257	170 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	PAR32	Q12515	295 aa	Known RBP	2.59	□□□□□ -1.99
HRD3	YLR207W	DFG16	Q99234	619 aa		2.59	□□□□□ -1.99
HRD3	YLR207W	ARG1	P22768	420 aa		2.59	□□□□□ -2
HRD3	YLR207W	PEX1	P24004	1043 aa		2.59	□□□□□ -2
HRD3	YLR207W	ROX1	P25042	368 aa		2.59	□□□□□ -2
HRD3	YLR207W	GPI10	P30777	616 aa		2.59	□□□□□ -2
HRD3	YLR207W	ERG3	P32353	365 aa		2.59	□□□□□ -2
HRD3	YLR207W	NTH1	P32356	751 aa		2.59	□□□□□ -2
HRD3	YLR207W	MVD1	P32377	396 aa	Known RBP	2.59	□□□□□ -2
HRD3	YLR207W	RPN2	P32565	945 aa	Known RBP	2.59	□□□□□ -2
HRD3	YLR207W	LSM5	P40089	93 aa	Known RBP	2.59	□□□□□ -2
HRD3	YLR207W	YIL077C	P40508	320 aa		2.59	□□□□□ -2
HRD3	YLR207W	SSU1	P41930	458 aa		2.59	□□□□□ -2
HRD3	YLR207W	YPL108W	Q02872	168 aa	Predicted RBP	2.59	□□□□□ -2
HRD3	YLR207W	DLT1	Q04216	342 aa		2.59	□□□□□ -2
HRD3	YLR207W	GYL1	Q04322	720 aa		2.59	□□□□□ -2
HRD3	YLR207W	RCN2	Q12044	265 aa		2.59	□□□□□ -2
HRD3	YLR207W	BUG1	Q12191	341 aa		2.59	□□□□□ -2
HRD3	YLR207W	SUI3	P09064	285 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	LPD1	P09624	499 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	GLK1	P17709	500 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	LCB1	P25045	558 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	OCA4	P25366	362 aa		2.58	□□□□□ -2
HRD3	YLR207W	KAR4	P25583	335 aa		2.58	□□□□□ -2
HRD3	YLR207W	CDC20	P26309	610 aa		2.58	□□□□□ -2
HRD3	YLR207W	RPS7A	P26786	190 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	OMA1	P36163	345 aa		2.58	□□□□□ -2
HRD3	YLR207W	KTR3	P38130	404 aa	Predicted RBP	2.58	□□□□□ -2
HRD3	YLR207W	COS111	P38308	924 aa		2.58	□□□□□ -2
HRD3	YLR207W	SPO22	P40511	975 aa		2.58	□□□□□ -2
HRD3	YLR207W	LCB2	P40970	561 aa		2.58	□□□□□ -2
HRD3	YLR207W	GSM1	P42950	618 aa		2.58	□□□□□ -2
HRD3	YLR207W	LSB3	P43603	459 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	ARC1	P46672	376 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	SAE2	P46946	345 aa		2.58	□□□□□ -2
HRD3	YLR207W	FYV8	P46949	817 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	IDS2	P46958	469 aa		2.58	□□□□□ -2
HRD3	YLR207W	COG1	P53079	417 aa		2.58	□□□□□ -2
HRD3	YLR207W	YPL062W	Q02781	134 aa		2.58	□□□□□ -2
HRD3	YLR207W	PEX25	Q02969	394 aa		2.58	□□□□□ -2
HRD3	YLR207W	DUS4	Q06063	367 aa		2.58	□□□□□ -2
HRD3	YLR207W	TFC6	Q06339	672 aa		2.58	□□□□□ -2
HRD3	YLR207W	ESC8	Q08119	714 aa		2.58	□□□□□ -2
HRD3	YLR207W	PCD1	Q12524	340 aa		2.58	□□□□□ -2
HRD3	YLR207W	HRP1	Q99383	534 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	YRF1-3	P0CX14	1859 aa		2.58	□□□□□ -2
HRD3	YLR207W	YRF1-7	P0CX15	1859 aa		2.58	□□□□□ -2
HRD3	YLR207W	URB1	P34241	1764 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	YRF1-6	P53819	1859 aa		2.58	□□□□□ -2
HRD3	YLR207W	FRD1	P32614	470 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	HIS7	P33734	552 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	REV7	P38927	245 aa		2.58	□□□□□ -2
HRD3	YLR207W	MAM1	P40065	302 aa		2.58	□□□□□ -2
HRD3	YLR207W	SEC28	P40509	296 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	ZAP1	P47043	880 aa		2.58	□□□□□ -2
HRD3	YLR207W	ECL1	P48235	211 aa		2.58	□□□□□ -2
HRD3	YLR207W	IMA1	P53051	589 aa		2.58	□□□□□ -2
HRD3	YLR207W	MTL1	P53214	551 aa		2.58	□□□□□ -2
HRD3	YLR207W	VPS75	P53853	264 aa		2.58	□□□□□ -2
HRD3	YLR207W	YSA1	Q01976	231 aa		2.58	□□□□□ -2
HRD3	YLR207W	CLU1	Q03690	1277 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	HMO1	Q03973	246 aa	Known RBP	2.58	□□□□□ -2
HRD3	YLR207W	AIM32	Q04689	311 aa		2.58	□□□□□ -2
HRD3	YLR207W	YPL191C	Q08930	360 aa		2.58	□□□□□ -2
HRD3	YLR207W	TUB2	P02557	457 aa	Known RBP	2.57	□□□□□ -2
HRD3	YLR207W	RPS13	P05756	151 aa	Known RBP	2.57	□□□□□ -2
HRD3	YLR207W	LAT1	P12695	482 aa	Known RBP	2.57	□□□□□ -2
HRD3	YLR207W	ERG6	P25087	383 aa	Known RBP	2.57	□□□□□ -2
HRD3	YLR207W	STE50	P25344	346 aa		2.57	□□□□□ -2
HRD3	YLR207W	ICL1	P28240	557 aa	Predicted RBP	2.57	□□□□□ -2
HRD3	YLR207W	SMY1	P32364	656 aa	Known RBP	2.57	□□□□□ -2
HRD3	YLR207W	YNG2	P38806	282 aa	Known RBP	2.57	□□□□□ -2
HRD3	YLR207W	LNP1	P38878	278 aa		2.57	□□□□□ -2
HRD3	YLR207W	YJL193W	P39542	402 aa		2.57	□□□□□ -2
HRD3	YLR207W	NUP60	P39705	539 aa		2.57	□□□□□ -2
HRD3	YLR207W	FTR1	P40088	404 aa		2.57	□□□□□ -2
HRD3	YLR207W	BST1	P43571	1029 aa		2.57	□□□□□ -2
HRD3	YLR207W	POL31	P46957	487 aa		2.57	□□□□□ -2
HRD3	YLR207W	MRX6	P48564	524 aa		2.57	□□□□□ -2
HRD3	YLR207W	OCA1	P50946	238 aa	Predicted RBP	2.57	□□□□□ -2
HRD3	YLR207W	CWC22	P53333	577 aa	Known RBP	2.57	□□□□□ -2
HRD3	YLR207W	FDC1	Q03034	503 aa		2.57	□□□□□ -2
HRD3	YLR207W	RAD30	Q04049	632 aa		2.57	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 23.8 ms