RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	YEL028W	P39989	153 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	TMN3	P40071	706 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	RAD26	P40352	1085 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	KTR7	P40504	517 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	MMM1	P41800	426 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	SUM1	P46676	1062 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	SIP4	P46954	829 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	GLG2	P47011	380 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	JJJ1	P53863	590 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	VPS9	P54787	451 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	ELP3	Q02908	557 aa	Known RBP	4.97	□□□□□ -1.61
VPS29	YHR012W	PIR1	Q03178	341 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	BNA5	Q05979	453 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	KAP95	Q06142	861 aa	Known RBP	4.97	□□□□□ -1.61
VPS29	YHR012W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
VPS29	YHR012W	TPO1	Q07824	586 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	RRP6	Q12149	733 aa	Known RBP	4.97	□□□□□ -1.61
VPS29	YHR012W	GPM3	Q12326	303 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	EFG1	Q3E705	233 aa	Known RBP	4.97	□□□□□ -1.61
VPS29	YHR012W	Q0182	Q9ZZW1	134 aa		4.97	□□□□□ -1.61
VPS29	YHR012W	SBP1	P10080	294 aa	Known RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	ATE1	P16639	503 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	TUP1	P16649	713 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	PDR3	P33200	976 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	PMT1	P33775	817 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	BLI1	P35727	113 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	BIT2	P38346	545 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	LRP1	P38801	184 aa	Known RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	PMC1	P38929	1173 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	LTP1	P40347	161 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	DJP1	P40564	432 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	MKT1	P40850	830 aa	Known RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	DUG1	P43616	481 aa	Known RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	RPS10B	P46784	105 aa	Known RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	SPC105	P53148	917 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	IPI3	P53877	555 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	YNL040W	P53960	456 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	NAM8	Q00539	523 aa	Known RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	UME1	Q03010	460 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	ATG16	Q03818	150 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	IVY1	Q04934	453 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	THI73	Q07904	523 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	AAD15	Q08361	143 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	RPS10A	Q08745	105 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS29	YHR012W	RTT10	Q08924	1013 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	PGC1	Q08959	321 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	SRO7	Q12038	1033 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	NAG1	Q8TGN9	163 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	AFI1	Q99222	893 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	YOR338W	Q99326	363 aa		4.96	□□□□□ -1.62
VPS29	YHR012W	IRA1	P18963	3092 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	SCH9	P11792	824 aa	Known RBP	4.95	□□□□□ -1.62
VPS29	YHR012W	PMA2	P19657	947 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	ROX1	P25042	368 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	SNT1	P25357	1226 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	MSP1	P28737	362 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	MCM2	P29469	868 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	TGL4	P36165	910 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	ELO1	P39540	310 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	ROK1	P45818	564 aa	Predicted RBP	4.95	□□□□□ -1.62
VPS29	YHR012W	CSN12	P47130	423 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	RFX1	P48743	811 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	MNT2	P53059	558 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	TAD1	P53065	400 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	YGR021W	P53212	290 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	SUN4	P53616	420 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	YNL143C	P53908	130 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	BET4	Q00618	327 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	RSC4	Q02206	625 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	INA17	Q02888	182 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	NGL3	Q03210	505 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	ENT5	Q03769	411 aa	Known RBP	4.95	□□□□□ -1.62
VPS29	YHR012W	YDR131C	Q03899	556 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	YMR018W	Q04364	514 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	LDB18	Q07887	179 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	GNT1	Q12096	491 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	YPR053C	Q6Q5F3	151 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	NHA1	Q99271	985 aa		4.95	□□□□□ -1.62
VPS29	YHR012W	INH1	P01097	85 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	DBF4	P32325	704 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	SHM1	P37292	490 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	NCL1	P38205	684 aa	Known RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	SRP72	P38688	640 aa	Known RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	AIM18	P38884	321 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	CCT6	P39079	546 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	IST3	P40565	148 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	YFL066C	P43538	392 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	YFR018C	P43599	363 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	ASN2	P49090	572 aa	Known RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	EMC4	P53073	190 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	SNO2	P53823	222 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	VPS75	P53853	264 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	UTP5	Q04177	643 aa	Known RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	YML096W	Q04489	525 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	GSF2	Q04697	403 aa	Known RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	SWC7	Q06707	132 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
VPS29	YHR012W	ATG10	Q07879	167 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	NEW1	Q08972	1196 aa	Known RBP	4.94	□□□□□ -1.62
VPS29	YHR012W	TGL5	Q12043	749 aa		4.94	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms