RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	YML002W	P0CF17	737 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	RPL19A	P0CX82	189 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	RPL19B	P0CX83	189 aa	Predicted RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	CAD1	P24813	409 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	PHO91	P27514	894 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	SRB4	P32569	687 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	REC104	P33323	182 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	UBP11	P36026	717 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	SDS22	P36047	338 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	HEL1	P36113	551 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	MMS4	P38257	691 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	COS111	P38308	924 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	EFM2	P38347	419 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	YHR097C	P38809	366 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	RPN10	P38886	268 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	UME6	P39001	836 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	PAN2	P53010	1115 aa	Predicted RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	RIM8	P53179	542 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	CUL3	P53202	744 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	PDR16	P53860	351 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	EGD1	Q02642	157 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	YDR514C	Q04408	483 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	CIR2	Q08822	631 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	VPS54	Q12071	889 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	SPE3	Q12074	293 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	ZRT2	Q12436	422 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	GRX6	Q12438	231 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	PFK27	Q12471	397 aa	Predicted RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	CET1	O13297	549 aa	Predicted RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	CYC1	P00044	109 aa	Predicted RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	TDH1	P00360	332 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	SOD2	P00447	233 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	RPS13	P05756	151 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	ADE3	P07245	946 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	ADE2	P21264	571 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	PRD1	P25375	712 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	ITR1	P30605	584 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	STE13	P33894	931 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	SRB2	P34162	210 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	YKL023W	P36103	277 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	PXL1	P36166	706 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	FAT1	P38225	669 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	YSW1	P38280	609 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	YHB1	P39676	399 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	YIL077C	P40508	320 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	MRX6	P48564	524 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	CGR1	P53188	120 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	MMR1	Q06324	491 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	ARR2	Q06597	130 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	MET7	Q08645	548 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	YPL277C	Q08989	487 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	GET3	Q12154	354 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	GPM3	Q12326	303 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	RIB2	Q12362	591 aa	Known RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	AHC1	Q12433	566 aa		4.26	□□□□□ -1.73
UBP6	YFR010W	BRR1	Q99177	341 aa	Predicted RBP	4.26	□□□□□ -1.73
UBP6	YFR010W	JIP3	O13555	125 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	PHO5	P00635	467 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	SEC53	P07283	254 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	VAS1	P07806	1104 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	GAL7	P08431	366 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	RPL11A	P0C0W9	174 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	ADH4	P10127	382 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	PWP1	P21304	576 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	PRE8	P23639	250 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	CLB4	P24871	460 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	OCA4	P25366	362 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	YCR015C	P25616	317 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	URA7	P28274	579 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	MGM101	P32787	269 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	SRP101	P32916	621 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	RPT5	P33297	434 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
UBP6	YFR010W	MSN4	P33749	630 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	PHO11	P35842	467 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	CUE2	P36075	443 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	SET3	P36124	751 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	YBR138C	P38277	524 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	NTC20	P38302	140 aa	Predicted RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	RFC3	P38629	340 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	PHO12	P38693	467 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	MUP3	P38734	546 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	YHL017W	P38745	532 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	LYS9	P38999	446 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	GIP4	P39732	760 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	EAF5	P39995	279 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	SCS2	P40075	244 aa	Known RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	SSU1	P41930	458 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	ASE1	P50275	885 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	YDR132C	Q03900	495 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	NHX1	Q04121	633 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	UFO1	Q04511	668 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	DIB1	Q06819	143 aa	Predicted RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	LUC7	Q07508	261 aa	Predicted RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	MCH5	Q08777	521 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	CWC2	Q12046	339 aa	Predicted RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	SKM1	Q12469	655 aa		4.25	□□□□□ -1.73
UBP6	YFR010W	RPL11B	Q3E757	174 aa	Predicted RBP	4.25	□□□□□ -1.73
UBP6	YFR010W	CAR2	P07991	424 aa	Known RBP	4.24	□□□□□ -1.73
UBP6	YFR010W	BET2	P20133	325 aa		4.24	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 11 ms