RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Gm9112A2AI92 75 aa9.34□□□□□ -0.91
Ccdc88a-201ENSMUST00000040182 Krtap14O08640 167 aa9.33□□□□□ -0.92
Ccdc88a-201ENSMUST00000040182 D6Ertd527eA0A0N4SWI3 464 aa9.32□□□□□ -0.92
Ccdc88a-201ENSMUST00000040182 Gm21887J3QQ04 176 aa9.3□□□□□ -0.92
Ccdc88a-201ENSMUST00000040182 Unc80Q8BLN6 3261 aa9.28□□□□□ -0.92
Ccdc88a-201ENSMUST00000040182 Lama1P19137 3084 aa9.28□□□□□ -0.92
Ccdc88a-201ENSMUST00000040182 Dmxl2Q8BPN8 3032 aa9.26□□□□□ -0.93
Ccdc88a-201ENSMUST00000040182 Frem2Q6NVD0 3160 aa9.26□□□□□ -0.93
Ccdc88a-201ENSMUST00000040182 Megf8P60882 2789 aa9.25□□□□□ -0.93
Ccdc88a-201ENSMUST00000040182 Gm36176A0A1W2P8D5 158 aa9.23□□□□□ -0.93
Ccdc88a-201ENSMUST00000040182 Krtap13O88375 197 aa9.21□□□□□ -0.94
Ccdc88a-201ENSMUST00000040182 Adgrg4B7ZCC9 3073 aa9.21□□□□□ -0.94
Ccdc88a-201ENSMUST00000040182 2310061N02RikQ9D6S9 174 aa9.19□□□□□ -0.94
Ccdc88a-201ENSMUST00000040182 Tenm4Q3UHK6 2771 aa9.18□□□□□ -0.94
Ccdc88a-201ENSMUST00000040182 Cdh23Q99PF4 3354 aa9.15□□□□□ -0.94
Ccdc88a-201ENSMUST00000040182 Celsr3Q91ZI0 3301 aa9.01□□□□□ -0.97
Ccdc88a-201ENSMUST00000040182 VwfQ8CIZ8 2813 aa9□□□□□ -0.97
Ccdc88a-201ENSMUST00000040182 Helz2E9QAM5 2947 aaKnown RBP8.96□□□□□ -0.97
Ccdc88a-201ENSMUST00000040182 Lrrc37aB1AWG4 3215 aa8.95□□□□□ -0.98
Ccdc88a-201ENSMUST00000040182 Zfhx3Q61329 3726 aa8.93□□□□□ -0.98
Ccdc88a-201ENSMUST00000040182 Gm20537G3UYK7 97 aa8.9□□□□□ -0.98
Ccdc88a-201ENSMUST00000040182 B930094E09RikQ8C4T2 136 aa8.84□□□□□ -0.99
Ccdc88a-201ENSMUST00000040182 Gm9507D3Z5T3 223 aa8.83□□□□□ -1
Ccdc88a-201ENSMUST00000040182 Myo15aQ9QZZ4 3511 aa8.77□□□□□ -1.01
Ccdc88a-201ENSMUST00000040182 Akap9Q70FJ1 3797 aa8.77□□□□□ -1.01
Ccdc88a-201ENSMUST00000040182 Prm2P07978 107 aa8.74□□□□□ -1.01
Ccdc88a-201ENSMUST00000040182 OtogO55225 2910 aa8.74□□□□□ -1.01
Ccdc88a-201ENSMUST00000040182 Vps13cQ8BX70 3748 aa8.74□□□□□ -1.01
Ccdc88a-201ENSMUST00000040182 Dchs2A0A0A6YW72 3346 aa8.71□□□□□ -1.02
Ccdc88a-201ENSMUST00000040182 A930033H14RikG5E8X6 103 aa8.71□□□□□ -1.02
Ccdc88a-201ENSMUST00000040182 Brca2P97929 3329 aa8.67□□□□□ -1.02
Ccdc88a-201ENSMUST00000040182 Gm17402F6Z0L5 76 aa8.65□□□□□ -1.02
Ccdc88a-201ENSMUST00000040182 Krtap10-4Q08EG8 221 aa8.65□□□□□ -1.03
Ccdc88a-201ENSMUST00000040182 Szt2A2A9C3 3431 aa8.64□□□□□ -1.03
Ccdc88a-201ENSMUST00000040182 Gm17416Q30KP4 66 aa8.62□□□□□ -1.03
Ccdc88a-201ENSMUST00000040182 Tenm2Q9WTS5 2764 aa8.62□□□□□ -1.03
Ccdc88a-201ENSMUST00000040182 Gm5965D3Z724 196 aa8.61□□□□□ -1.03
Ccdc88a-201ENSMUST00000040182 2310079G19RikQ9D6L6 185 aa8.61□□□□□ -1.03
Ccdc88a-201ENSMUST00000040182 Ank2Q8C8R3 3898 aa8.55□□□□□ -1.04
Ccdc88a-201ENSMUST00000040182 Krtap10-10A0A1W2P7T6 217 aa8.55□□□□□ -1.04
Ccdc88a-201ENSMUST00000040182 DmdP11531 3678 aa8.54□□□□□ -1.04
Ccdc88a-201ENSMUST00000040182 2310057N15RikQ9D6T8 200 aa8.53□□□□□ -1.04
Ccdc88a-201ENSMUST00000040182 Fbn1Q61554 2873 aaKnown RBP8.49□□□□□ -1.05
Ccdc88a-201ENSMUST00000040182 Col6a3E9PWQ3 3284 aa8.48□□□□□ -1.05
Ccdc88a-201ENSMUST00000040182 SpegQ62407 3262 aa8.44□□□□□ -1.06
Ccdc88a-201ENSMUST00000040182 VcanQ62059 3357 aa8.44□□□□□ -1.06
Ccdc88a-201ENSMUST00000040182 Col7a1Q63870 2944 aa8.4□□□□□ -1.07
Ccdc88a-201ENSMUST00000040182 Gm2696A0A1W2P709 240 aa8.4□□□□□ -1.07
Ccdc88a-201ENSMUST00000040182 2210017I01RikA0A0A6YVV1 95 aa8.37□□□□□ -1.07
Ccdc88a-201ENSMUST00000040182 4933428G20RikQ9D3X4 101 aa8.31□□□□□ -1.08
Ccdc88a-201ENSMUST00000040182 Dchs1E9PVD3 3291 aa8.24□□□□□ -1.09
Ccdc88a-201ENSMUST00000040182 SpenQ62504 3644 aaKnown RBP8.2□□□□□ -1.1
Ccdc88a-201ENSMUST00000040182 Cmya5Q70KF4 3739 aa8.19□□□□□ -1.1
Ccdc88a-201ENSMUST00000040182 Muc5acE9QAQ8 3455 aa8.13□□□□□ -1.11
Ccdc88a-201ENSMUST00000040182 Gm19668J3QMD1 248 aa8.05□□□□□ -1.12
Ccdc88a-201ENSMUST00000040182 Lama5Q61001 3718 aa8.03□□□□□ -1.12
Ccdc88a-201ENSMUST00000040182 Muc6Q80T03 2850 aa8.02□□□□□ -1.13
Ccdc88a-201ENSMUST00000040182 Smg1Q8BKX6 3658 aaKnown RBP8.02□□□□□ -1.13
Ccdc88a-201ENSMUST00000040182 RelnQ60841 3461 aa8.01□□□□□ -1.13
Ccdc88a-201ENSMUST00000040182 Wdfy3Q6VNB8 3508 aa7.98□□□□□ -1.13
Ccdc88a-201ENSMUST00000040182 BsnO88737 3942 aa7.9□□□□□ -1.15
Ccdc88a-201ENSMUST00000040182 Csmd1Q923L3 3564 aa7.86□□□□□ -1.15
Ccdc88a-201ENSMUST00000040182 Zfhx4Q9JJN2 3550 aa7.81□□□□□ -1.16
Ccdc88a-201ENSMUST00000040182 Gm9918Q8BUR5 174 aa7.68□□□□□ -1.18
Ccdc88a-201ENSMUST00000040182 Muc4Q8JZM8 3443 aa7.68□□□□□ -1.18
Ccdc88a-201ENSMUST00000040182 Gm11939A2A592 99 aa7.68□□□□□ -1.18
Ccdc88a-201ENSMUST00000040182 Gm9736A0A1W2P7N1 277 aa7.66□□□□□ -1.18
Ccdc88a-201ENSMUST00000040182 Krtap13-1Q8K198 168 aa7.64□□□□□ -1.19
Ccdc88a-201ENSMUST00000040182 Gm884A2A9H6 3643 aa7.61□□□□□ -1.19
Ccdc88a-201ENSMUST00000040182 Csmd2V9GX34 3611 aa7.61□□□□□ -1.19
Ccdc88a-201ENSMUST00000040182 Krtap3-1A2A591 98 aa7.52□□□□□ -1.21
Ccdc88a-201ENSMUST00000040182 LystP97412 3788 aa7.47□□□□□ -1.21
Ccdc88a-201ENSMUST00000040182 Krtap3-2Q9D638 99 aa7.45□□□□□ -1.22
Ccdc88a-201ENSMUST00000040182 Krtap3-3Q9D7P0 99 aa7.45□□□□□ -1.22
Ccdc88a-201ENSMUST00000040182 Krtap19-5O08632 62 aa7.39□□□□□ -1.23
Ccdc88a-201ENSMUST00000040182 Xirp2Q4U4S6 3784 aa7.37□□□□□ -1.23
Ccdc88a-201ENSMUST00000040182 Csmd3Q80T79 3707 aa7.21□□□□□ -1.26
Ccdc88a-201ENSMUST00000040182 Crct1Q6PAI5 102 aa7.13□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Svep1A2AVA0 3567 aa7.13□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Sprr2a3Q4KL71 83 aa7.13□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Sprr2a1Q9CQK8 83 aa7.13□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Gm10318A0A1W2P728 225 aa7.13□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Krtap1-5A2A590 122 aa7.12□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Krtap19-9aF8WH65 55 aa7.12□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Krtap7-1Q9D3I6 87 aa7.09□□□□□ -1.27
Ccdc88a-201ENSMUST00000040182 Hspg2Q05793 3707 aaKnown RBP7.08□□□□□ -1.28
Ccdc88a-201ENSMUST00000040182 Gm6358A0A087WPH4 74 aa7.07□□□□□ -1.28
Ccdc88a-201ENSMUST00000040182 Dnah3Q8BW94 4083 aa7.03□□□□□ -1.28
Ccdc88a-201ENSMUST00000040182 Dnah7bL7N1Y0 4068 aa7.03□□□□□ -1.28
Ccdc88a-201ENSMUST00000040182 Krtap19-9bQ99NG9 58 aa7.01□□□□□ -1.29
Ccdc88a-201ENSMUST00000040182 Krtap8-1O08633 61 aa6.96□□□□□ -1.29
Ccdc88a-201ENSMUST00000040182 CubnQ9JLB4 3623 aa6.83□□□□□ -1.32
Ccdc88a-201ENSMUST00000040182 Dnah7cA0A087WR13 4024 aa6.81□□□□□ -1.32
Ccdc88a-201ENSMUST00000040182 Krtap1-4Q3V2D6 188 aa6.79□□□□□ -1.32
Ccdc88a-201ENSMUST00000040182 Dnah7aE9Q0T8 4024 aa6.78□□□□□ -1.32
Ccdc88a-201ENSMUST00000040182 Huwe1Q7TMY8 4377 aaKnown RBP6.7□□□□□ -1.34
Ccdc88a-201ENSMUST00000040182 Krtap12-1Q9Z287 130 aa6.69□□□□□ -1.34
Ccdc88a-201ENSMUST00000040182 Vps13bQ80TY5 3993 aa6.68□□□□□ -1.34
Ccdc88a-201ENSMUST00000040182 Gm18596A0A1W2P860 280 aa6.68□□□□□ -1.34
Ccdc88a-201ENSMUST00000040182 Sprr2kO70562 68 aa6.67□□□□□ -1.34
Retrieved 100 of 22,080 RNA–protein pairs in 48.4 ms