RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Gm10135F6TEE5 83 aa8.53□□□□□ -1.04
Trim56-201ENSMUST00000054384 Reg3aO09037 175 aa8.52□□□□□ -1.05
Trim56-201ENSMUST00000054384 Znf575Q3TXZ1 239 aa8.52□□□□□ -1.05
Trim56-201ENSMUST00000054384 Coa6Q8BGD8 79 aa8.52□□□□□ -1.05
Trim56-201ENSMUST00000054384 Cd164l2Q9D6W7 172 aa8.52□□□□□ -1.05
Trim56-201ENSMUST00000054384 Defb39Q70KL3 74 aa8.52□□□□□ -1.05
Trim56-201ENSMUST00000054384 Chchd10Q7TNL9 138 aa8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 Spint4Q9D263 159 aa8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 Gm16485Q8C4B7 115 aa8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 B430305J03RikQ8BQQ8 176 aa8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 4930519P11RikQ9CUJ8 166 aa8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 Q9DAA7 145 aa8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 Usp9xP70398 2559 aaKnown RBP8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 Gm3443F7CCV5 94 aa8.51□□□□□ -1.05
Trim56-201ENSMUST00000054384 A730009L09RikA0A1B0GS82 72 aa8.5□□□□□ -1.05
Trim56-201ENSMUST00000054384 Mrpl34Q99N91 92 aa8.49□□□□□ -1.05
Trim56-201ENSMUST00000054384 Odf3l2Q3TZ65 277 aa8.48□□□□□ -1.05
Trim56-201ENSMUST00000054384 Pla2g2eQ9QUL3 142 aa8.47□□□□□ -1.05
Trim56-201ENSMUST00000054384 Cd164Q9R0L9 197 aa8.47□□□□□ -1.05
Trim56-201ENSMUST00000054384 Spink13Q3UTS8 97 aa8.47□□□□□ -1.05
Trim56-201ENSMUST00000054384 Gm10160F6Y577 67 aa8.47□□□□□ -1.05
Trim56-201ENSMUST00000054384 Gm9573F7C950 1606 aa8.47□□□□□ -1.05
Trim56-201ENSMUST00000054384 Smr3aQ61900 147 aa8.46□□□□□ -1.05
Trim56-201ENSMUST00000054384 Cox6a2P43023 97 aa8.46□□□□□ -1.06
Trim56-201ENSMUST00000054384 BC025920Q3US60 128 aa8.46□□□□□ -1.06
Trim56-201ENSMUST00000054384 Msrb1Q9JLC3 116 aa8.46□□□□□ -1.06
Trim56-201ENSMUST00000054384 Defb10Q8R2I8 73 aa8.45□□□□□ -1.06
Trim56-201ENSMUST00000054384 Gm5464Q3UY29 175 aa8.45□□□□□ -1.06
Trim56-201ENSMUST00000054384 Defb2P82020 71 aa8.45□□□□□ -1.06
Trim56-201ENSMUST00000054384 Bri3P28662 125 aa8.45□□□□□ -1.06
Trim56-201ENSMUST00000054384 TrrapQ80YV3 2565 aaKnown RBP8.44□□□□□ -1.06
Trim56-201ENSMUST00000054384 Dmbt1Q60997 2085 aa8.43□□□□□ -1.06
Trim56-201ENSMUST00000054384 Piezo1E2JF22 2547 aa8.42□□□□□ -1.06
Trim56-201ENSMUST00000054384 Q9DAB9 146 aa8.42□□□□□ -1.06
Trim56-201ENSMUST00000054384 Rtl10D3YWW5 146 aa8.41□□□□□ -1.06
Trim56-201ENSMUST00000054384 Cdip1Q9DB75 208 aa8.41□□□□□ -1.06
Trim56-201ENSMUST00000054384 Limd2Q8BGB5 128 aa8.41□□□□□ -1.06
Trim56-201ENSMUST00000054384 Fam19a3Q7TPG6 132 aa8.41□□□□□ -1.06
Trim56-201ENSMUST00000054384 Sostdc1Q9CQN4 206 aa8.41□□□□□ -1.06
Trim56-201ENSMUST00000054384 Ighv2-5A0A0A6YY69 116 aa8.4□□□□□ -1.06
Trim56-201ENSMUST00000054384 Gm10197F6QEY5 67 aa8.4□□□□□ -1.06
Trim56-201ENSMUST00000054384 Mp68P56379 58 aa8.4□□□□□ -1.06
Trim56-201ENSMUST00000054384 6430550D23RikE9Q1X6 194 aa8.4□□□□□ -1.06
Trim56-201ENSMUST00000054384 Gm10999F6Q4M4 69 aa8.4□□□□□ -1.07
Trim56-201ENSMUST00000054384 Ankrd17Q99NH0 2603 aaKnown RBP8.39□□□□□ -1.07
Trim56-201ENSMUST00000054384 Col4a2P08122 1707 aa8.39□□□□□ -1.07
Trim56-201ENSMUST00000054384 1700018G05RikA0A1B0GSI2 66 aa8.39□□□□□ -1.07
Trim56-201ENSMUST00000054384 Igkv8-27A0A0G2JF28 120 aa8.39□□□□□ -1.07
Trim56-201ENSMUST00000054384 Gm10642Q3TWM1 71 aa8.38□□□□□ -1.07
Trim56-201ENSMUST00000054384 Kmt2bO08550 2713 aa8.38□□□□□ -1.07
Trim56-201ENSMUST00000054384 2310034G01RikA0A286YDL3 209 aa8.38□□□□□ -1.07
Trim56-201ENSMUST00000054384 Defb50Q6TU36 73 aa8.38□□□□□ -1.07
Trim56-201ENSMUST00000054384 Defb45Q3V490 66 aa8.37□□□□□ -1.07
Trim56-201ENSMUST00000054384 Defb37Q7TMD2 62 aa8.37□□□□□ -1.07
Trim56-201ENSMUST00000054384 A930002H24RikQ8C8Y3 163 aa8.37□□□□□ -1.07
Trim56-201ENSMUST00000054384 Usp9yF8VPU6 2556 aa8.37□□□□□ -1.07
Trim56-201ENSMUST00000054384 AplnQ9R0R4 77 aa8.37□□□□□ -1.07
Trim56-201ENSMUST00000054384 Ighv2-2A0A075B5P8 116 aa8.36□□□□□ -1.07
Trim56-201ENSMUST00000054384 P01821 116 aa8.36□□□□□ -1.07
Trim56-201ENSMUST00000054384 Dmac1Q9CQ00 111 aa8.36□□□□□ -1.07
Trim56-201ENSMUST00000054384 Chd8Q09XV5 2582 aaKnown RBP8.36□□□□□ -1.07
Trim56-201ENSMUST00000054384 P01819 144 aa8.36□□□□□ -1.07
Trim56-201ENSMUST00000054384 AI606181Q8C7B9 129 aa8.35□□□□□ -1.07
Trim56-201ENSMUST00000054384 Gm43218A0A0G2JGT0 114 aa8.35□□□□□ -1.07
Trim56-201ENSMUST00000054384 MtorQ9JLN9 2549 aa8.35□□□□□ -1.07
Trim56-201ENSMUST00000054384 Gm11627A6PWP4 55 aa8.35□□□□□ -1.07
Trim56-201ENSMUST00000054384 A530084C06RikQ3UTW2 186 aa8.35□□□□□ -1.07
Trim56-201ENSMUST00000054384 Znf580Q9DB38 172 aa8.35□□□□□ -1.07
Trim56-201ENSMUST00000054384 Prr9Q8BV84 116 aa8.34□□□□□ -1.07
Trim56-201ENSMUST00000054384 Gm21886J3QJU9 214 aa8.33□□□□□ -1.08
Trim56-201ENSMUST00000054384 Rps28P62858 69 aaKnown RBP8.33□□□□□ -1.08
Trim56-201ENSMUST00000054384 Gm20661K7N787 53 aa8.33□□□□□ -1.08
Trim56-201ENSMUST00000054384 4930507D05RikQ8C9C9 103 aa8.33□□□□□ -1.08
Trim56-201ENSMUST00000054384 Gm20538F6Z9R1 75 aa8.32□□□□□ -1.08
Trim56-201ENSMUST00000054384 Krtap16-1A2A5X5 502 aa8.3□□□□□ -1.08
Trim56-201ENSMUST00000054384 Prol1E9PYQ4 312 aa8.3□□□□□ -1.08
Trim56-201ENSMUST00000054384 Elof1P60003 83 aa8.3□□□□□ -1.08
Trim56-201ENSMUST00000054384 3110070M22RikQ9DAQ7 118 aa8.28□□□□□ -1.08
Trim56-201ENSMUST00000054384 Defb1P56386 69 aa8.28□□□□□ -1.08
Trim56-201ENSMUST00000054384 Q8BGJ3 129 aa8.28□□□□□ -1.08
Trim56-201ENSMUST00000054384 Gm9903Q8C9Y8 129 aa8.28□□□□□ -1.08
Trim56-201ENSMUST00000054384 Gm44790A0A0N4SV91 103 aa8.27□□□□□ -1.09
Trim56-201ENSMUST00000054384 Gm10300Q8C8P7 189 aa8.27□□□□□ -1.09
Trim56-201ENSMUST00000054384 Znf414Q9DCK4 299 aa8.27□□□□□ -1.09
Trim56-201ENSMUST00000054384 Nbeal1E9PYP2 2688 aa8.27□□□□□ -1.09
Trim56-201ENSMUST00000054384 Crip3Q6Q6R3 243 aa8.26□□□□□ -1.09
Trim56-201ENSMUST00000054384 Cep192E9Q4Y4 2514 aaKnown RBP8.26□□□□□ -1.09
Trim56-201ENSMUST00000054384 Epg5Q80TA9 2572 aa8.26□□□□□ -1.09
Trim56-201ENSMUST00000054384 Gpr15lA0A0B4J1N3 78 aa8.24□□□□□ -1.09
Trim56-201ENSMUST00000054384 Gm16181B0V2H2 73 aa8.23□□□□□ -1.09
Trim56-201ENSMUST00000054384 Myo18bE9PV66 2605 aa8.22□□□□□ -1.09
Trim56-201ENSMUST00000054384 Gm10770F7D043 238 aa8.22□□□□□ -1.09
Trim56-201ENSMUST00000054384 CrygaP04345 174 aa8.22□□□□□ -1.09
Trim56-201ENSMUST00000054384 E130208F15RikQ3UPV3 143 aa8.19□□□□□ -1.1
Trim56-201ENSMUST00000054384 Spaca4Q80ZQ0 127 aa8.19□□□□□ -1.1
Trim56-201ENSMUST00000054384 Defb11Q8R2I7 77 aa8.19□□□□□ -1.1
Trim56-201ENSMUST00000054384 Usp24B1AY13 2617 aaKnown RBP8.18□□□□□ -1.1
Trim56-201ENSMUST00000054384 Rpl37aP61514 92 aa8.18□□□□□ -1.1
Trim56-201ENSMUST00000054384 AI854703Q8BIN3 203 aa8.18□□□□□ -1.1
Trim56-201ENSMUST00000054384 Phf5aP83870 110 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 22,080 RNA–protein pairs in 70.6 ms