RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Notch1Q01705 2531 aa6.28□□□□□ -1.4
Trim39-201ENSMUST00000042717 Trbv16A0A0B4J1H3 115 aa6.28□□□□□ -1.4
Trim39-201ENSMUST00000042717 Sumo2P61957 95 aaKnown RBP6.28□□□□□ -1.4
Trim39-201ENSMUST00000042717 VwfQ8CIZ8 2813 aa6.28□□□□□ -1.4
Trim39-201ENSMUST00000042717 Krtap16-1A2A5X5 502 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Umad1E0CX23 159 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Pglyrp1O88593 182 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 P84751 237 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Ss18Q62280 418 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Hnrnpa3Q8BG05 379 aaKnown RBP6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Dkk2Q9QYZ8 259 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Ramp1Q9WTJ5 148 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Ighv1-66A0A075B5X5 117 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Trav14-2A0A075B694 121 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 P01736 120 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Tmem136Q3TYE7 245 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Q3UNZ8 350 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Trav7d-3Q5R1I1 112 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Q8R092 253 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Trav12-3A0A075B648 115 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Tcl1b4P56844 120 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 NpyP57774 97 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Ndufa4Q62425 82 aaKnown RBP6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 BC106179Q8C9L1 186 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Crip2Q9DCT8 208 aaKnown RBP6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 Cend1Q9JKC6 149 aa6.27□□□□□ -1.41
Trim39-201ENSMUST00000042717 E130114P18RikF6S0S7 154 aa6.26□□□□□ -1.41
Trim39-201ENSMUST00000042717 Ammecr1lQ8JZZ6 310 aa6.26□□□□□ -1.41
Trim39-201ENSMUST00000042717 MrapQ9D159 127 aa6.26□□□□□ -1.41
Trim39-201ENSMUST00000042717 Spata3Q9D9T6 193 aa6.26□□□□□ -1.41
Trim39-201ENSMUST00000042717 EsdQ9R0P3 282 aa6.26□□□□□ -1.41
Trim39-201ENSMUST00000042717 GfyJ3KML8 504 aa6.26□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm9513B3GLJ6 99 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm1968Q3T9I3 115 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 Znf740Q6NZQ6 180 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 AamdcQ8R0P4 122 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 Fam241bQ9D882 120 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm17430F6RSK3 157 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm10322F7D7I4 111 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 A530064D06RikQ8BNV8 229 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm14137Q8CE97 175 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 Cysltr1Q99JA4 352 aa6.25□□□□□ -1.41
Trim39-201ENSMUST00000042717 OdaphJ3QNT8 126 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Ighv8-12A0A0G2JDE1 119 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm16442D3YZG3 307 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm20458E9PXJ7 78 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm28305F6U473 122 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Esp3J3QN49 87 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm10509O88255 85 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Snai3Q9QY31 287 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Krtap27-1E9PX37 202 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Card19Q9D1I2 183 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 Fam213bQ9DB60 201 aa6.24□□□□□ -1.41
Trim39-201ENSMUST00000042717 CtrlQ9ER05 264 aa6.23□□□□□ -1.41
Trim39-201ENSMUST00000042717 Cox8cA6H666 72 aa6.23□□□□□ -1.41
Trim39-201ENSMUST00000042717 BB014433Q8C5R5 389 aa6.23□□□□□ -1.41
Trim39-201ENSMUST00000042717 Pla2g1bQ9Z0Y2 146 aa6.23□□□□□ -1.41
Trim39-201ENSMUST00000042717 Trav9d-3A0A075B695 113 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 D730001G18RikA0A087WQU7 115 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gm17359A0A0G2JEB7 487 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Rpl39P62892 51 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Fxyd5P97808 178 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 OtorQ9JIE3 128 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Igkv4-91A0A075B5L2 119 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Ighv8-8A0A0A6YXQ0 119 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Spink1P09036 80 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Morn3Q8C5T4 241 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Atp5lQ9CPQ8 103 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Malsu1Q9CWV0 228 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Tex48Q9DA81 110 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Sec11aQ9R0P6 179 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 TcraP01849 138 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Snx22Q8C084 192 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Spata45Q9CVW4 97 aa6.22□□□□□ -1.41
Trim39-201ENSMUST00000042717 Gng4P50153 75 aa6.21□□□□□ -1.42
Trim39-201ENSMUST00000042717 Cox11Q6P8I6 275 aa6.21□□□□□ -1.42
Trim39-201ENSMUST00000042717 Trav6-6A0A075B603 114 aa6.21□□□□□ -1.42
Trim39-201ENSMUST00000042717 Ormdl2Q9CQZ0 153 aa6.21□□□□□ -1.42
Trim39-201ENSMUST00000042717 Lyzl4Q9D925 145 aa6.21□□□□□ -1.42
Trim39-201ENSMUST00000042717 Gm12057A0A087WR21 115 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Gm5629P06327 117 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Polr2kQ63871 58 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Higd2aQ9CQJ1 106 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Rbmxl2Q9DAE2 385 aaKnown RBP6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Josd1Q9DBJ6 202 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Phlda3Q9WV95 125 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Esp4A8R0T8 117 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Trav7-2Q5R1I3 112 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Rnf114Q9ET26 229 aa6.2□□□□□ -1.42
Trim39-201ENSMUST00000042717 Ighv1-5A0A0A6YWG2 117 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Lgals6O54891 301 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 TtrP07309 147 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Defa22Q8C1N8 93 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Trav6n-6A0A075B6B2 114 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Cox7a1P56392 80 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Spry2Q9QXV8 315 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Nat8b-psE0CYC6 232 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Vsig4F6TUL9 280 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 P01794 123 aa6.19□□□□□ -1.42
Trim39-201ENSMUST00000042717 Cox17P56394 63 aa6.19□□□□□ -1.42
Retrieved 100 of 22,080 RNA–protein pairs in 126.5 ms