Protein–RNA interactions for Protein: A0A075B6B2

Trav6n-6, T cell receptor alpha variable 6N-6 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6n-6A0A075B6B2 Gm25239-201ENSMUST00000174915 86 ntBASIC25.84■■□□□ 1.73
Trav6n-6A0A075B6B2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Trav6n-6A0A075B6B2 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trav6n-6A0A075B6B2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Trav6n-6A0A075B6B2 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trav6n-6A0A075B6B2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trav6n-6A0A075B6B2 Psd-208ENSMUST00000224556 2034 ntBASIC23.62■■□□□ 1.37
Trav6n-6A0A075B6B2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trav6n-6A0A075B6B2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Trav6n-6A0A075B6B2 Gm15042-201ENSMUST00000120212 883 ntBASIC22.86■■□□□ 1.25
Trav6n-6A0A075B6B2 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav6n-6A0A075B6B2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trav6n-6A0A075B6B2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav6n-6A0A075B6B2 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Trav6n-6A0A075B6B2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav6n-6A0A075B6B2 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Trav6n-6A0A075B6B2 Gm15045-201ENSMUST00000117359 883 ntBASIC22.31■■□□□ 1.16
Trav6n-6A0A075B6B2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trav6n-6A0A075B6B2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav6n-6A0A075B6B2 Gm24109-201ENSMUST00000175489 103 ntBASIC22.21■■□□□ 1.15
Trav6n-6A0A075B6B2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav6n-6A0A075B6B2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav6n-6A0A075B6B2 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Trav6n-6A0A075B6B2 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trav6n-6A0A075B6B2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav6n-6A0A075B6B2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trav6n-6A0A075B6B2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trav6n-6A0A075B6B2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav6n-6A0A075B6B2 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav6n-6A0A075B6B2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav6n-6A0A075B6B2 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.74■■□□□ 1.07
Trav6n-6A0A075B6B2 Gm23366-201ENSMUST00000175022 89 ntBASIC21.7■■□□□ 1.06
Trav6n-6A0A075B6B2 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6n-6A0A075B6B2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.58■■□□□ 1.04
Trav6n-6A0A075B6B2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav6n-6A0A075B6B2 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav6n-6A0A075B6B2 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.45■■□□□ 1.02
Trav6n-6A0A075B6B2 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav6n-6A0A075B6B2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6n-6A0A075B6B2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Trav6n-6A0A075B6B2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trav6n-6A0A075B6B2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav6n-6A0A075B6B2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.24■□□□□ 0.99
Trav6n-6A0A075B6B2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav6n-6A0A075B6B2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav6n-6A0A075B6B2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Trav6n-6A0A075B6B2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav6n-6A0A075B6B2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav6n-6A0A075B6B2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav6n-6A0A075B6B2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Trav6n-6A0A075B6B2 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Trav6n-6A0A075B6B2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6n-6A0A075B6B2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav6n-6A0A075B6B2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.07■□□□□ 0.96
Trav6n-6A0A075B6B2 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trav6n-6A0A075B6B2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20.98■□□□□ 0.95
Trav6n-6A0A075B6B2 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trav6n-6A0A075B6B2 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trav6n-6A0A075B6B2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.82■□□□□ 0.92
Trav6n-6A0A075B6B2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Trav6n-6A0A075B6B2 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.74■□□□□ 0.91
Trav6n-6A0A075B6B2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trav6n-6A0A075B6B2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trav6n-6A0A075B6B2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trav6n-6A0A075B6B2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trav6n-6A0A075B6B2 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav6n-6A0A075B6B2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trav6n-6A0A075B6B2 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6n-6A0A075B6B2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6n-6A0A075B6B2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
Trav6n-6A0A075B6B2 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.57■□□□□ 0.88
Trav6n-6A0A075B6B2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.55■□□□□ 0.88
Trav6n-6A0A075B6B2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.54■□□□□ 0.88
Trav6n-6A0A075B6B2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6n-6A0A075B6B2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.51■□□□□ 0.87
Trav6n-6A0A075B6B2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav6n-6A0A075B6B2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav6n-6A0A075B6B2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.47■□□□□ 0.87
Trav6n-6A0A075B6B2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
Trav6n-6A0A075B6B2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Trav6n-6A0A075B6B2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trav6n-6A0A075B6B2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC20.39■□□□□ 0.85
Trav6n-6A0A075B6B2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav6n-6A0A075B6B2 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav6n-6A0A075B6B2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav6n-6A0A075B6B2 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Trav6n-6A0A075B6B2 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav6n-6A0A075B6B2 Gm25238-201ENSMUST00000174914 89 ntBASIC20.28■□□□□ 0.84
Trav6n-6A0A075B6B2 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav6n-6A0A075B6B2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav6n-6A0A075B6B2 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav6n-6A0A075B6B2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6n-6A0A075B6B2 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav6n-6A0A075B6B2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav6n-6A0A075B6B2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6n-6A0A075B6B2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trav6n-6A0A075B6B2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav6n-6A0A075B6B2 Gm27325-201ENSMUST00000175467 74 ntBASIC20.07■□□□□ 0.8
Trav6n-6A0A075B6B2 Zxda-201ENSMUST00000117281 2621 ntBASIC20.07■□□□□ 0.8
Trav6n-6A0A075B6B2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms