Protein–RNA interactions for Protein: A0A075B648

Trav12-3, T cell receptor alpha variable 12-3 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12-3A0A075B648 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Trav12-3A0A075B648 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Trav12-3A0A075B648 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
Trav12-3A0A075B648 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Trav12-3A0A075B648 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trav12-3A0A075B648 Psd-208ENSMUST00000224556 2034 ntBASIC24.18■■□□□ 1.46
Trav12-3A0A075B648 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trav12-3A0A075B648 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trav12-3A0A075B648 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav12-3A0A075B648 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trav12-3A0A075B648 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Trav12-3A0A075B648 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trav12-3A0A075B648 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trav12-3A0A075B648 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trav12-3A0A075B648 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Trav12-3A0A075B648 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trav12-3A0A075B648 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trav12-3A0A075B648 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Trav12-3A0A075B648 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav12-3A0A075B648 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trav12-3A0A075B648 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trav12-3A0A075B648 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.17■■□□□ 1.14
Trav12-3A0A075B648 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav12-3A0A075B648 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.92■■□□□ 1.1
Trav12-3A0A075B648 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav12-3A0A075B648 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav12-3A0A075B648 Gm25239-201ENSMUST00000174915 86 ntBASIC21.81■■□□□ 1.08
Trav12-3A0A075B648 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav12-3A0A075B648 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav12-3A0A075B648 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.78■■□□□ 1.08
Trav12-3A0A075B648 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav12-3A0A075B648 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trav12-3A0A075B648 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trav12-3A0A075B648 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.61■■□□□ 1.05
Trav12-3A0A075B648 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Trav12-3A0A075B648 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Trav12-3A0A075B648 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trav12-3A0A075B648 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.29■■□□□ 1
Trav12-3A0A075B648 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav12-3A0A075B648 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav12-3A0A075B648 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
Trav12-3A0A075B648 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav12-3A0A075B648 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav12-3A0A075B648 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav12-3A0A075B648 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Trav12-3A0A075B648 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trav12-3A0A075B648 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav12-3A0A075B648 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav12-3A0A075B648 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav12-3A0A075B648 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.93■□□□□ 0.94
Trav12-3A0A075B648 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.92■□□□□ 0.94
Trav12-3A0A075B648 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.9■□□□□ 0.94
Trav12-3A0A075B648 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Trav12-3A0A075B648 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.9■□□□□ 0.94
Trav12-3A0A075B648 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trav12-3A0A075B648 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav12-3A0A075B648 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav12-3A0A075B648 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav12-3A0A075B648 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav12-3A0A075B648 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav12-3A0A075B648 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav12-3A0A075B648 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.77■□□□□ 0.91
Trav12-3A0A075B648 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trav12-3A0A075B648 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trav12-3A0A075B648 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trav12-3A0A075B648 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav12-3A0A075B648 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Trav12-3A0A075B648 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav12-3A0A075B648 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav12-3A0A075B648 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trav12-3A0A075B648 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.58■□□□□ 0.88
Trav12-3A0A075B648 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav12-3A0A075B648 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trav12-3A0A075B648 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav12-3A0A075B648 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Trav12-3A0A075B648 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav12-3A0A075B648 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav12-3A0A075B648 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav12-3A0A075B648 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav12-3A0A075B648 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trav12-3A0A075B648 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Trav12-3A0A075B648 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav12-3A0A075B648 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Trav12-3A0A075B648 Zxda-201ENSMUST00000117281 2621 ntBASIC20.34■□□□□ 0.85
Trav12-3A0A075B648 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav12-3A0A075B648 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav12-3A0A075B648 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav12-3A0A075B648 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav12-3A0A075B648 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.31■□□□□ 0.84
Trav12-3A0A075B648 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav12-3A0A075B648 Gm15042-201ENSMUST00000120212 883 ntBASIC20.27■□□□□ 0.84
Trav12-3A0A075B648 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.27■□□□□ 0.83
Trav12-3A0A075B648 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav12-3A0A075B648 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav12-3A0A075B648 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav12-3A0A075B648 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav12-3A0A075B648 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav12-3A0A075B648 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav12-3A0A075B648 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav12-3A0A075B648 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms