RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Dpm2Q9Z324 84 aa12.15□□□□□ -0.47
Shh-201ENSMUST00000002708 Ighv1-52A0A0A6YXC3 117 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 OdaphJ3QNT8 126 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 Ube2d3P61079 147 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 Ube2d2P62838 147 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 BC048562Q80ZQ7 204 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 Iah1Q9DB29 249 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 Esp24A8R0V6 68 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 1500011B03RikQ3TTH7 73 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 BC025920Q3US60 128 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 BC106179Q8C9L1 186 aa12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 Crip2Q9DCT8 208 aaKnown RBP12.14□□□□□ -0.47
Shh-201ENSMUST00000002708 Gm45717A0A1B0GT68 152 aa12.13□□□□□ -0.47
Shh-201ENSMUST00000002708 Gm9913Q8BQQ2 135 aa12.13□□□□□ -0.47
Shh-201ENSMUST00000002708 Notch3Q61982 2318 aa12.13□□□□□ -0.47
Shh-201ENSMUST00000002708 Tcrg-C1A0A075B5Z0 172 aa12.13□□□□□ -0.47
Shh-201ENSMUST00000002708 Gm29666A0A087WQ99 126 aa12.13□□□□□ -0.47
Shh-201ENSMUST00000002708 Ighv8-5A0A0A6YY60 119 aa12.13□□□□□ -0.47
Shh-201ENSMUST00000002708 Il1f10Q8R459 152 aa12.13□□□□□ -0.47
Shh-201ENSMUST00000002708 Ighv2-7A0A075B5Q8 116 aa12.12□□□□□ -0.47
Shh-201ENSMUST00000002708 Hectd1Q69ZR2 2618 aaKnown RBP12.12□□□□□ -0.47
Shh-201ENSMUST00000002708 Ighv1-66A0A075B5X5 117 aa12.12□□□□□ -0.47
Shh-201ENSMUST00000002708 Tep1P97499 2629 aa12.11□□□□□ -0.47
Shh-201ENSMUST00000002708 Trav9-2A0A075B647 113 aa12.11□□□□□ -0.47
Shh-201ENSMUST00000002708 Trav9-4A0A0B4J1K2 113 aa12.11□□□□□ -0.47
Shh-201ENSMUST00000002708 Gm6812B1AXU1 112 aa12.11□□□□□ -0.47
Shh-201ENSMUST00000002708 Igkv4-62A0A0G2JDW9 117 aa12.11□□□□□ -0.47
Shh-201ENSMUST00000002708 Mrpl35Q9CQL6 188 aa12.11□□□□□ -0.47
Shh-201ENSMUST00000002708 Gm17732E9Q5I2 61 aa12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 Snrpd3P62320 126 aaKnown RBP12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 Ighv2-3A0A075B696 115 aa12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 P01802 115 aa12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 Defb47Q30KN1 79 aa12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 Klhdc1Q80YG3 406 aa12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 Ndufs7Q9DC70 224 aa12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 Ccl24Q9JKC0 119 aa12.1□□□□□ -0.47
Shh-201ENSMUST00000002708 NpwA0A1L1STR8 176 aa12.09□□□□□ -0.47
Shh-201ENSMUST00000002708 Lect2O88803 151 aa12.09□□□□□ -0.47
Shh-201ENSMUST00000002708 Cks1bP61025 79 aa12.09□□□□□ -0.47
Shh-201ENSMUST00000002708 Smr3aQ61900 147 aa12.09□□□□□ -0.47
Shh-201ENSMUST00000002708 Higd1aQ9JLR9 95 aa12.09□□□□□ -0.47
Shh-201ENSMUST00000002708 Gm11444F6QMA6 170 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 4930596D02RikQ3V0H9 216 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 Fam19a4Q7TPG5 135 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 AI854703Q8BIN3 203 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 Mpv17l2Q8VIK2 200 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 Igfn1Q3KNY0 2849 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 Pglyrp1O88593 182 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 Dynlrb2Q9DAJ5 96 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 Nf1Q04690 2841 aa12.08□□□□□ -0.48
Shh-201ENSMUST00000002708 1810032O08RikE9PZV8 113 aa12.07□□□□□ -0.48
Shh-201ENSMUST00000002708 Gm10135F6TEE5 83 aa12.07□□□□□ -0.48
Shh-201ENSMUST00000002708 Ifitm10Q8BR26 201 aa12.07□□□□□ -0.48
Shh-201ENSMUST00000002708 Trav4n-4A0A075B615 110 aa12.07□□□□□ -0.48
Shh-201ENSMUST00000002708 Dmrt3Q80WT2 476 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 Morn5Q9DAI9 170 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 Rpl13aP19253 203 aaKnown RBP12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 Ccl21aP84444 133 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 P84751 237 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 Ccl21bP86792 133 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 Ccl21cP86793 133 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 Mfap4Q9D1H9 257 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 A930009A15RikG3UYI6 118 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 Cfc1P97766 202 aa12.06□□□□□ -0.48
Shh-201ENSMUST00000002708 CubnQ9JLB4 3623 aa12.05□□□□□ -0.48
Shh-201ENSMUST00000002708 Gm20499D3Z4G5 72 aa12.05□□□□□ -0.48
Shh-201ENSMUST00000002708 P01753 117 aa12.05□□□□□ -0.48
Shh-201ENSMUST00000002708 Tmem263Q9DAM7 115 aa12.05□□□□□ -0.48
Shh-201ENSMUST00000002708 Timm17aQ9Z0V8 171 aa12.05□□□□□ -0.48
Shh-201ENSMUST00000002708 Arid1bE9Q4N7 2244 aa12.05□□□□□ -0.48
Shh-201ENSMUST00000002708 Q9DAQ5 155 aa12.04□□□□□ -0.48
Shh-201ENSMUST00000002708 Ighv1-63A0A075B5X2 117 aa12.04□□□□□ -0.48
Shh-201ENSMUST00000002708 Gm933J3QPC1 141 aa12.04□□□□□ -0.48
Shh-201ENSMUST00000002708 Chd6A3KFM7 2711 aa12.03□□□□□ -0.48
Shh-201ENSMUST00000002708 Trbv16A0A0B4J1H3 115 aa12.03□□□□□ -0.48
Shh-201ENSMUST00000002708 LeprotO89013 131 aa12.03□□□□□ -0.48
Shh-201ENSMUST00000002708 Rpl32P62911 135 aaKnown RBP12.03□□□□□ -0.48
Shh-201ENSMUST00000002708 Tac4Q99N14 128 aa12.03□□□□□ -0.48
Shh-201ENSMUST00000002708 BC067074F6RXI4 2391 aa12.03□□□□□ -0.48
Shh-201ENSMUST00000002708 Gm20730A0A075B5J6 119 aa12.02□□□□□ -0.48
Shh-201ENSMUST00000002708 Ube2e2Q91W82 201 aa12.02□□□□□ -0.48
Shh-201ENSMUST00000002708 Anapc13Q8R034 74 aa12.02□□□□□ -0.49
Shh-201ENSMUST00000002708 Atp6v0e2Q91XE7 81 aa12.02□□□□□ -0.49
Shh-201ENSMUST00000002708 Ighv1-85A0A075B5Y6 117 aa12.01□□□□□ -0.49
Shh-201ENSMUST00000002708 Gm9513B3GLJ6 99 aa12.01□□□□□ -0.49
Shh-201ENSMUST00000002708 Ankrd11E9Q4F7 2643 aa12.01□□□□□ -0.49
Shh-201ENSMUST00000002708 Srsf12Q8C8K3 266 aa12.01□□□□□ -0.49
Shh-201ENSMUST00000002708 Fam216aQ9DB54 251 aa12.01□□□□□ -0.49
Shh-201ENSMUST00000002708 Atp5lQ9CPQ8 103 aa12.01□□□□□ -0.49
Shh-201ENSMUST00000002708 4930564D02RikQ9D4S4 103 aa12.01□□□□□ -0.49
Shh-201ENSMUST00000002708 Trav13d-1A0A075B606 110 aa12□□□□□ -0.49
Shh-201ENSMUST00000002708 Fhl2O70433 279 aa12□□□□□ -0.49
Shh-201ENSMUST00000002708 AngP21570 145 aa12□□□□□ -0.49
Shh-201ENSMUST00000002708 Ang3P97802 145 aa12□□□□□ -0.49
Shh-201ENSMUST00000002708 Rmi2Q3UPE3 149 aa12□□□□□ -0.49
Shh-201ENSMUST00000002708 Synj2bpQ9D6K5 145 aa12□□□□□ -0.49
Shh-201ENSMUST00000002708 Ifi27l2aQ8R412 90 aa12□□□□□ -0.49
Shh-201ENSMUST00000002708 Gm10490F6VBM2 120 aa11.99□□□□□ -0.49
Shh-201ENSMUST00000002708 Reg3gO09049 174 aa11.99□□□□□ -0.49
Shh-201ENSMUST00000002708 Ighv5-9-1A0A0A6YVS4 126 aa11.98□□□□□ -0.49
Retrieved 100 of 22,080 RNA–protein pairs in 51.8 ms